HEADER SIGNALING PROTEIN/INHIBITOR 22-AUG-17 6ARK TITLE CRYSTAL STRUCTURE OF COMPOUND 10 COVALENTLY BOUND TO K-RAS G12C COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS DOCKOVALENT, COVALENT DOCKING, K-RAS G12C, COVALENT INHIBITORS, KEYWDS 2 COVALENT FRAGMENTS, SIGNALING PROTEIN, SIGNALING PROTEIN-INHIBITOR KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.I.NNADI,M.L.JENKINS,D.R.GENTILE,L.A.BATEMAN,D.ZAIDMAN,T.E.BALIUS, AUTHOR 2 D.K.NOMURA,J.E.BURKE,K.M.SHOKAT,N.LONDON REVDAT 4 04-OCT-23 6ARK 1 LINK REVDAT 3 04-DEC-19 6ARK 1 REMARK REVDAT 2 07-MAR-18 6ARK 1 JRNL REVDAT 1 31-JAN-18 6ARK 0 JRNL AUTH C.I.NNADI,M.L.JENKINS,D.R.GENTILE,L.A.BATEMAN,D.ZAIDMAN, JRNL AUTH 2 T.E.BALIUS,D.K.NOMURA,J.E.BURKE,K.M.SHOKAT,N.LONDON JRNL TITL NOVEL K-RAS G12C SWITCH-II COVALENT BINDERS DESTABILIZE RAS JRNL TITL 2 AND ACCELERATE NUCLEOTIDE EXCHANGE. JRNL REF J CHEM INF MODEL V. 58 464 2018 JRNL REFN ESSN 1549-960X JRNL PMID 29320178 JRNL DOI 10.1021/ACS.JCIM.7B00399 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.290 REMARK 3 FREE R VALUE TEST SET COUNT : 2116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:28) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3741 19.5348 -24.6202 REMARK 3 T TENSOR REMARK 3 T11: 0.2986 T22: 0.3692 REMARK 3 T33: 0.7325 T12: 0.0185 REMARK 3 T13: 0.0652 T23: -0.2317 REMARK 3 L TENSOR REMARK 3 L11: 0.0951 L22: 0.8850 REMARK 3 L33: 0.6617 L12: 0.0307 REMARK 3 L13: 0.1153 L23: -0.3077 REMARK 3 S TENSOR REMARK 3 S11: 0.1333 S12: -1.1220 S13: 1.7694 REMARK 3 S21: 0.2372 S22: 0.0584 S23: -0.4337 REMARK 3 S31: -0.2631 S32: -0.0059 S33: 0.0685 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 29:38) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8813 18.2580 -16.0460 REMARK 3 T TENSOR REMARK 3 T11: 0.4639 T22: 1.0896 REMARK 3 T33: 0.9541 T12: 0.1129 REMARK 3 T13: -0.2931 T23: -0.6936 REMARK 3 L TENSOR REMARK 3 L11: 2.1392 L22: 0.5934 REMARK 3 L33: 0.4955 L12: 0.8346 REMARK 3 L13: 0.8191 L23: 0.1065 REMARK 3 S TENSOR REMARK 3 S11: 0.2403 S12: -0.6356 S13: 0.0164 REMARK 3 S21: 0.3224 S22: 0.0820 S23: -0.3646 REMARK 3 S31: 0.2607 S32: 0.0060 S33: 0.2118 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 39:43) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1342 24.3819 -20.9140 REMARK 3 T TENSOR REMARK 3 T11: 0.4390 T22: 0.4064 REMARK 3 T33: 0.5830 T12: -0.0133 REMARK 3 T13: -0.0189 T23: -0.3605 REMARK 3 L TENSOR REMARK 3 L11: 6.7704 L22: 1.7413 REMARK 3 L33: 3.7142 L12: -1.5150 REMARK 3 L13: 2.6718 L23: -2.5336 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: 0.0262 S13: 0.7869 REMARK 3 S21: 0.4785 S22: 0.0661 S23: -0.2953 REMARK 3 S31: -0.7295 S32: 0.4368 S33: 0.4204 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 44:50) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9880 26.2251 -33.2769 REMARK 3 T TENSOR REMARK 3 T11: 0.5338 T22: 0.2725 REMARK 3 T33: 0.3445 T12: 0.0435 REMARK 3 T13: 0.1459 T23: -0.0437 REMARK 3 L TENSOR REMARK 3 L11: 3.6717 L22: 6.0871 REMARK 3 L33: 4.9941 L12: 0.9121 REMARK 3 L13: -1.7922 L23: 4.4658 REMARK 3 S TENSOR REMARK 3 S11: 0.6853 S12: -0.3640 S13: 0.8922 REMARK 3 S21: 0.6945 S22: 0.5718 S23: -0.0066 REMARK 3 S31: -1.8836 S32: -0.2620 S33: -0.3193 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 51:60) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9562 17.7697 -21.0840 REMARK 3 T TENSOR REMARK 3 T11: 0.2184 T22: 0.3455 REMARK 3 T33: 0.4581 T12: -0.0401 REMARK 3 T13: 0.0304 T23: -0.1963 REMARK 3 L TENSOR REMARK 3 L11: 5.2804 L22: 8.6085 REMARK 3 L33: 8.3022 L12: 4.9211 REMARK 3 L13: -2.4145 L23: 3.1211 REMARK 3 S TENSOR REMARK 3 S11: 0.4949 S12: -0.9028 S13: 0.1651 REMARK 3 S21: -0.2577 S22: 0.0092 S23: 0.1638 REMARK 3 S31: 0.0391 S32: 0.4556 S33: -0.4757 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 68:74) REMARK 3 ORIGIN FOR THE GROUP (A): -25.1117 8.7698 -16.4058 REMARK 3 T TENSOR REMARK 3 T11: 0.9293 T22: 0.7940 REMARK 3 T33: 0.5055 T12: -0.0218 REMARK 3 T13: 0.0802 T23: 0.0707 REMARK 3 L TENSOR REMARK 3 L11: 4.2082 L22: 5.1810 REMARK 3 L33: 2.9057 L12: -4.3692 REMARK 3 L13: -1.5561 L23: 2.8453 REMARK 3 S TENSOR REMARK 3 S11: 0.5618 S12: -0.6511 S13: 0.0900 REMARK 3 S21: 1.3537 S22: -0.3902 S23: -0.5458 REMARK 3 S31: 0.6414 S32: 0.4379 S33: 0.2400 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 75:92) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5272 6.9502 -28.5720 REMARK 3 T TENSOR REMARK 3 T11: 0.2238 T22: 0.2095 REMARK 3 T33: 0.2773 T12: -0.0097 REMARK 3 T13: -0.0202 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 3.8576 L22: 6.7117 REMARK 3 L33: 2.9297 L12: -4.1787 REMARK 3 L13: -2.7154 L23: 1.3740 REMARK 3 S TENSOR REMARK 3 S11: 0.0371 S12: 0.1095 S13: -0.6529 REMARK 3 S21: 0.0998 S22: -0.1307 S23: -0.2213 REMARK 3 S31: 0.0697 S32: -0.0184 S33: 0.0886 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 93:102) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6910 0.3737 -25.4756 REMARK 3 T TENSOR REMARK 3 T11: 0.2857 T22: 0.3010 REMARK 3 T33: 0.3605 T12: 0.0177 REMARK 3 T13: 0.0013 T23: 0.0354 REMARK 3 L TENSOR REMARK 3 L11: 4.7387 L22: 4.8411 REMARK 3 L33: 4.9573 L12: 4.7783 REMARK 3 L13: -4.8384 L23: -4.8864 REMARK 3 S TENSOR REMARK 3 S11: -0.4963 S12: 0.0980 S13: -0.1655 REMARK 3 S21: 0.0744 S22: 0.4634 S23: 0.1886 REMARK 3 S31: 0.3042 S32: -0.3722 S33: 0.0803 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 103:110) REMARK 3 ORIGIN FOR THE GROUP (A): -28.4845 2.2563 -27.4368 REMARK 3 T TENSOR REMARK 3 T11: 0.3008 T22: 0.3021 REMARK 3 T33: 0.4071 T12: -0.0377 REMARK 3 T13: 0.0956 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 8.9575 L22: 3.4088 REMARK 3 L33: 8.0177 L12: 4.3219 REMARK 3 L13: -4.6970 L23: -0.0170 REMARK 3 S TENSOR REMARK 3 S11: -0.4575 S12: -0.2094 S13: -0.0086 REMARK 3 S21: 0.4065 S22: 0.1522 S23: 1.2725 REMARK 3 S31: 0.5619 S32: -0.5017 S33: 0.1375 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 111:134) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2175 8.4466 -36.5726 REMARK 3 T TENSOR REMARK 3 T11: 0.1936 T22: 0.2621 REMARK 3 T33: 0.3023 T12: 0.0084 REMARK 3 T13: 0.0468 T23: -0.0641 REMARK 3 L TENSOR REMARK 3 L11: 5.5894 L22: 4.6924 REMARK 3 L33: 1.1889 L12: 2.0544 REMARK 3 L13: 2.5274 L23: 0.3841 REMARK 3 S TENSOR REMARK 3 S11: -0.2163 S12: 0.7352 S13: -0.2739 REMARK 3 S21: -0.3644 S22: 0.3561 S23: -0.5043 REMARK 3 S31: -0.0276 S32: 0.2793 S33: -0.1215 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 135:149) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5211 12.4111 -35.7396 REMARK 3 T TENSOR REMARK 3 T11: 0.1726 T22: 0.2344 REMARK 3 T33: 0.4064 T12: 0.0273 REMARK 3 T13: -0.0233 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 4.1847 L22: 0.5382 REMARK 3 L33: 1.8584 L12: -0.5727 REMARK 3 L13: 1.2152 L23: 0.3263 REMARK 3 S TENSOR REMARK 3 S11: -0.1245 S12: 0.4639 S13: 0.7698 REMARK 3 S21: -0.0595 S22: 0.2205 S23: -0.3877 REMARK 3 S31: 0.0100 S32: 0.2949 S33: -0.1487 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 150:169) REMARK 3 ORIGIN FOR THE GROUP (A): -25.1508 16.6037 -33.7033 REMARK 3 T TENSOR REMARK 3 T11: 0.1900 T22: 0.2245 REMARK 3 T33: 0.3216 T12: 0.0296 REMARK 3 T13: 0.0389 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 2.1932 L22: 4.3272 REMARK 3 L33: 4.1725 L12: -0.9077 REMARK 3 L13: 1.2968 L23: -0.6442 REMARK 3 S TENSOR REMARK 3 S11: 0.1279 S12: 0.0241 S13: 0.6908 REMARK 3 S21: -0.0014 S22: -0.2080 S23: 0.0555 REMARK 3 S31: -0.0728 S32: -0.3012 S33: 0.0320 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ARK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000228539. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.1.3 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39968 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.99600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4L9S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 400, 2M (NH4)2SO4, 0.1M HEPES, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 47.14000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.21629 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 39.85000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 47.14000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.21629 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 39.85000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 47.14000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.21629 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 39.85000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 47.14000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.21629 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 39.85000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 47.14000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.21629 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 39.85000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 47.14000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.21629 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.85000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.43258 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 79.70000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 54.43258 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 79.70000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 54.43258 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 79.70000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 54.43258 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 79.70000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 54.43258 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 79.70000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 54.43258 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 79.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 63 REMARK 465 TYR A 64 REMARK 465 SER A 65 REMARK 465 ALA A 66 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 25 CG CD OE1 NE2 REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 GLN A 70 CG CD OE1 NE2 REMARK 470 ARG A 102 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 154 O HOH A 301 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N GLY A 0 N GLY A 0 17554 1.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 103.81 -45.81 REMARK 500 GLN A 61 -9.40 -146.39 REMARK 500 ASP A 108 67.54 -108.44 REMARK 500 LYS A 117 35.75 75.56 REMARK 500 SER A 122 75.73 49.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 201 O2B 87.4 REMARK 620 3 HOH A 305 O 169.1 85.2 REMARK 620 4 HOH A 308 O 97.9 81.3 73.2 REMARK 620 5 HOH A 310 O 106.4 95.6 82.2 155.3 REMARK 620 6 HOH A 314 O 116.5 155.8 70.6 91.0 81.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BQD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 205 DBREF 6ARK A 1 169 UNP P01116 RASK_HUMAN 1 169 SEQADV 6ARK GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 6ARK CYS A 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 6ARK SER A 51 UNP P01116 CYS 51 ENGINEERED MUTATION SEQADV 6ARK LEU A 80 UNP P01116 CYS 80 ENGINEERED MUTATION SEQADV 6ARK SER A 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQRES 1 A 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 2 A 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 170 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 A 170 LYS HET GDP A 201 39 HET MG A 202 1 HET BQD A 203 42 HET GOL A 204 14 HET GOL A 205 14 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM BQD (3R)-N-(6-BROMONAPHTHALEN-2-YL)-3-HYDROXY-1-PROPANOYL- HETNAM 2 BQD L-PROLINAMIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 MG MG 2+ FORMUL 4 BQD C18 H19 BR N2 O3 FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *56(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 ARG A 68 GLY A 75 1 8 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 LYS A 167 1 17 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O SER A 51 N VAL A 44 SHEET 3 AA1 6 THR A 2 VAL A 9 1 N LEU A 6 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O VAL A 114 N LEU A 80 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK SG CYS A 12 C07 BQD A 203 1555 1555 1.78 LINK OG SER A 17 MG MG A 202 1555 1555 1.99 LINK O2B GDP A 201 MG MG A 202 1555 1555 2.19 LINK MG MG A 202 O HOH A 305 1555 1555 2.15 LINK MG MG A 202 O HOH A 308 1555 1555 2.25 LINK MG MG A 202 O HOH A 310 1555 1555 2.13 LINK MG MG A 202 O HOH A 314 1555 1555 2.19 SITE 1 AC1 21 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC1 21 SER A 17 ALA A 18 PHE A 28 VAL A 29 SITE 3 AC1 21 ASP A 30 ASN A 116 LYS A 117 ASP A 119 SITE 4 AC1 21 LEU A 120 SER A 145 ALA A 146 LYS A 147 SITE 5 AC1 21 MG A 202 HOH A 305 HOH A 308 HOH A 327 SITE 6 AC1 21 HOH A 343 SITE 1 AC2 7 SER A 17 ASP A 57 GDP A 201 HOH A 305 SITE 2 AC2 7 HOH A 308 HOH A 310 HOH A 314 SITE 1 AC3 5 CYS A 12 ASN A 86 ASP A 92 HIS A 95 SITE 2 AC3 5 GLN A 99 SITE 1 AC4 8 ASN A 85 GLU A 91 HIS A 94 LEU A 120 SITE 2 AC4 8 PRO A 121 SER A 122 HOH A 311 HOH A 313 SITE 1 AC5 8 ASP A 47 GLN A 150 GLY A 151 ASP A 154 SITE 2 AC5 8 TYR A 157 HOH A 306 HOH A 319 HOH A 325 CRYST1 94.280 94.280 119.550 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010607 0.006124 0.000000 0.00000 SCALE2 0.000000 0.012248 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008365 0.00000