HEADER HYDROLASE/HYDROLASE INHIBITOR 24-AUG-17 6ASC TITLE MRE11 DIMER IN COMPLEX WITH ENDONUCLEASE INHIBITOR PFM04 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEASE SBCCD SUBUNIT D; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 5 GENE: SBCD, TM_1635; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA REPAIR MRE11 THERMOPHILIC NUCLEASE DNA DOUBLE-STRAND BREAK REPAIR KEYWDS 2 HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.MOIANI,A.S.ARVAI,J.A.TAINER REVDAT 3 13-MAR-24 6ASC 1 LINK REVDAT 2 21-MAR-18 6ASC 1 JRNL REVDAT 1 07-MAR-18 6ASC 0 JRNL AUTH D.MOIANI,D.A.RONATO,C.A.BROSEY,A.S.ARVAI,A.SYED,J.Y.MASSON, JRNL AUTH 2 E.PETRICCI,J.A.TAINER JRNL TITL TARGETING ALLOSTERY WITH AVATARS TO DESIGN INHIBITORS JRNL TITL 2 ASSESSED BY CELL ACTIVITY: DISSECTING MRE11 ENDO- AND JRNL TITL 3 EXONUCLEASE ACTIVITIES. JRNL REF METH. ENZYMOL. V. 601 205 2018 JRNL REFN ISSN 1557-7988 JRNL PMID 29523233 JRNL DOI 10.1016/BS.MIE.2017.11.030 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2580: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.5 REMARK 3 NUMBER OF REFLECTIONS : 72439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.560 REMARK 3 FREE R VALUE TEST SET COUNT : 3303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0482 - 6.1970 0.97 3516 172 0.1687 0.2065 REMARK 3 2 6.1970 - 4.9205 0.96 3473 160 0.1764 0.1896 REMARK 3 3 4.9205 - 4.2991 0.95 3446 155 0.1453 0.1898 REMARK 3 4 4.2991 - 3.9062 0.94 3402 166 0.1626 0.1581 REMARK 3 5 3.9062 - 3.6264 0.93 3373 155 0.1866 0.2545 REMARK 3 6 3.6264 - 3.4126 0.92 3338 153 0.2026 0.2519 REMARK 3 7 3.4126 - 3.2418 0.92 3339 162 0.2287 0.2483 REMARK 3 8 3.2418 - 3.1007 0.90 3244 161 0.2244 0.2796 REMARK 3 9 3.1007 - 2.9814 0.89 3187 151 0.2369 0.2506 REMARK 3 10 2.9814 - 2.8785 0.88 3232 157 0.2281 0.2714 REMARK 3 11 2.8785 - 2.7885 0.86 3066 144 0.2307 0.2618 REMARK 3 12 2.7885 - 2.7088 0.86 3106 150 0.2441 0.2945 REMARK 3 13 2.7088 - 2.6375 0.84 3080 146 0.2313 0.2475 REMARK 3 14 2.6375 - 2.5732 0.82 2986 142 0.2397 0.2931 REMARK 3 15 2.5732 - 2.5147 0.80 2874 141 0.2354 0.2650 REMARK 3 16 2.5147 - 2.4611 0.80 2884 148 0.2372 0.2858 REMARK 3 17 2.4611 - 2.4119 0.76 2743 118 0.2491 0.3019 REMARK 3 18 2.4119 - 2.3664 0.75 2756 128 0.2440 0.3263 REMARK 3 19 2.3664 - 2.3241 0.73 2642 123 0.2734 0.3217 REMARK 3 20 2.3241 - 2.2848 0.67 2397 126 0.2736 0.3770 REMARK 3 21 2.2848 - 2.2479 0.57 2095 101 0.2708 0.3266 REMARK 3 22 2.2479 - 2.2133 0.51 1832 93 0.3002 0.3500 REMARK 3 23 2.2133 - 2.1808 0.45 1645 76 0.3105 0.3576 REMARK 3 24 2.1808 - 2.1500 0.40 1480 75 0.3071 0.3170 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5351 REMARK 3 ANGLE : 0.789 7247 REMARK 3 CHIRALITY : 0.046 800 REMARK 3 PLANARITY : 0.004 932 REMARK 3 DIHEDRAL : 15.551 3216 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: NOT RESNAME HOH REMARK 3 ORIGIN FOR THE GROUP (A): 17.4429 456.0010 19.7368 REMARK 3 T TENSOR REMARK 3 T11: 0.3106 T22: 0.3418 REMARK 3 T33: 0.3719 T12: 0.0215 REMARK 3 T13: -0.0042 T23: 0.0502 REMARK 3 L TENSOR REMARK 3 L11: 0.2663 L22: 0.3630 REMARK 3 L33: 0.3622 L12: 0.1023 REMARK 3 L13: 0.0735 L23: -0.1455 REMARK 3 S TENSOR REMARK 3 S11: -0.0286 S12: 0.0153 S13: 0.0706 REMARK 3 S21: -0.0320 S22: -0.0675 S23: -0.0318 REMARK 3 S31: 0.1227 S32: -0.0405 S33: -0.0125 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ASC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11583 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43590 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 46.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WE ADDED 5MM PFM04 (DISSOLVED IN DMSO) REMARK 280 TO 10 MG/ML TMMRE11. THE MOTHER LIQUOR WAS 10% PEG3350, 20 MM REMARK 280 CACL2, 0.1 M MES PH 6.5. THIS WAS MIXED 1:1 WITH THE PROTEIN: REMARK 280 INHIBITOR COMPLEX AND SET UP AS HANGING DROP VAPOR DIFFUSION. REMARK 280 FOR CRYOPROTECTION, 20% ETHYLENE GLYCOL WAS ADDED TO THE MOTHER REMARK 280 LIQUOR., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.34100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 VAL B 1 REMARK 465 ILE B 2 REMARK 465 ASN B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 131 CE NZ REMARK 470 LEU A 146 CG CD1 CD2 REMARK 470 ARG A 147 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 ARG A 154 CZ NH1 NH2 REMARK 470 ILE A 192 CG1 CG2 CD1 REMARK 470 GLN A 194 CG CD OE1 NE2 REMARK 470 ARG A 196 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 278 NZ REMARK 470 LYS A 279 NZ REMARK 470 ARG B 63 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 100 CE NZ REMARK 470 LYS B 131 CE NZ REMARK 470 LEU B 146 CG CD1 CD2 REMARK 470 ARG B 147 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 ARG B 154 CD NE CZ NH1 NH2 REMARK 470 GLU B 172 CG CD OE1 OE2 REMARK 470 ILE B 192 CG1 CG2 CD1 REMARK 470 GLU B 193 CG CD OE1 OE2 REMARK 470 GLN B 194 CG CD OE1 NE2 REMARK 470 ARG B 196 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 246 CD OE1 OE2 REMARK 470 LYS B 278 NZ REMARK 470 ARG B 293 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 25 -60.69 -120.46 REMARK 500 PRO A 140 100.69 -57.92 REMARK 500 ASP A 141 -175.98 -69.04 REMARK 500 GLU A 142 -60.85 58.26 REMARK 500 LYS A 170 43.09 -83.00 REMARK 500 GLU A 172 -78.03 -88.41 REMARK 500 ASP A 173 -78.09 -101.21 REMARK 500 HIS A 216 -18.96 105.25 REMARK 500 ASP A 312 68.66 -68.45 REMARK 500 SER B 25 -60.73 -120.75 REMARK 500 PRO B 140 100.80 -57.60 REMARK 500 ASP B 141 -176.16 -68.65 REMARK 500 GLU B 142 -61.39 58.19 REMARK 500 LYS B 170 44.19 -83.75 REMARK 500 GLU B 172 -79.03 -88.59 REMARK 500 ASP B 173 -77.39 -100.56 REMARK 500 HIS B 216 -8.56 104.37 REMARK 500 ASP B 312 72.03 -65.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 58 OD2 REMARK 620 2 HIS A 216 ND1 125.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 14 OD1 REMARK 620 2 ASP B 58 OD1 82.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 58 OD1 REMARK 620 2 HIS B 216 ND1 114.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU7 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU7 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 DBREF 6ASC A 2 324 UNP Q9X1X0 Q9X1X0_THEMA 2 324 DBREF 6ASC B 2 324 UNP Q9X1X0 Q9X1X0_THEMA 2 324 SEQADV 6ASC MET A -11 UNP Q9X1X0 INITIATING METHIONINE SEQADV 6ASC GLY A -10 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC SER A -9 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC ASP A -8 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC LYS A -7 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC ILE A -6 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC HIS A -5 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC HIS A -4 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC HIS A -3 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC HIS A -2 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC HIS A -1 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC HIS A 0 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC VAL A 1 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC MET B -11 UNP Q9X1X0 INITIATING METHIONINE SEQADV 6ASC GLY B -10 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC SER B -9 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC ASP B -8 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC LYS B -7 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC ILE B -6 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC HIS B -5 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC HIS B -4 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC HIS B -3 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC HIS B -2 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC HIS B -1 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC HIS B 0 UNP Q9X1X0 EXPRESSION TAG SEQADV 6ASC VAL B 1 UNP Q9X1X0 EXPRESSION TAG SEQRES 1 A 336 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS VAL SEQRES 2 A 336 ILE ASN LEU LYS GLU LEU LYS ILE LEU HIS THR SER ASP SEQRES 3 A 336 TRP HIS LEU GLY VAL THR SER TRP THR SER SER ARG PRO SEQRES 4 A 336 VAL ASP ARG ARG GLU GLU LEU LYS LYS ALA LEU ASP LYS SEQRES 5 A 336 VAL VAL GLU GLU ALA GLU LYS ARG GLU VAL ASP LEU ILE SEQRES 6 A 336 LEU LEU THR GLY ASP LEU LEU HIS SER ARG ASN ASN PRO SEQRES 7 A 336 SER VAL VAL ALA LEU HIS ASP LEU LEU ASP TYR LEU LYS SEQRES 8 A 336 ARG MET MET ARG THR ALA PRO VAL VAL VAL LEU PRO GLY SEQRES 9 A 336 ASN HIS ASP TRP LYS GLY LEU LYS LEU PHE GLY ASN PHE SEQRES 10 A 336 VAL THR SER ILE SER SER ASP ILE THR PHE VAL MET SER SEQRES 11 A 336 PHE GLU PRO VAL ASP VAL GLU ALA LYS ARG GLY GLN LYS SEQRES 12 A 336 VAL ARG ILE LEU PRO PHE PRO TYR PRO ASP GLU SER GLU SEQRES 13 A 336 ALA LEU ARG LYS ASN GLU GLY ASP PHE ARG PHE PHE LEU SEQRES 14 A 336 GLU SER ARG LEU ASN LYS LEU TYR GLU GLU ALA LEU LYS SEQRES 15 A 336 LYS GLU ASP PHE ALA ILE PHE MET GLY HIS PHE THR VAL SEQRES 16 A 336 GLU GLY LEU ALA GLY TYR ALA GLY ILE GLU GLN GLY ARG SEQRES 17 A 336 GLU ILE ILE ILE ASN ARG ALA LEU ILE PRO SER VAL VAL SEQRES 18 A 336 ASP TYR ALA ALA LEU GLY HIS ILE HIS SER PHE ARG GLU SEQRES 19 A 336 ILE GLN LYS GLN PRO LEU THR ILE TYR PRO GLY SER LEU SEQRES 20 A 336 ILE ARG ILE ASP PHE GLY GLU GLU ALA ASP GLU LYS GLY SEQRES 21 A 336 ALA VAL PHE VAL GLU LEU LYS ARG GLY GLU PRO PRO ARG SEQRES 22 A 336 TYR GLU ARG ILE ASP ALA SER PRO LEU PRO LEU LYS THR SEQRES 23 A 336 LEU TYR TYR LYS LYS ILE ASP THR SER ALA LEU LYS SER SEQRES 24 A 336 ILE ARG ASP PHE CYS ARG ASN PHE PRO GLY TYR VAL ARG SEQRES 25 A 336 VAL VAL TYR GLU GLU ASP SER GLY ILE LEU PRO ASP LEU SEQRES 26 A 336 MET GLY GLU ILE ASP ASN LEU VAL LYS ILE GLU SEQRES 1 B 336 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS VAL SEQRES 2 B 336 ILE ASN LEU LYS GLU LEU LYS ILE LEU HIS THR SER ASP SEQRES 3 B 336 TRP HIS LEU GLY VAL THR SER TRP THR SER SER ARG PRO SEQRES 4 B 336 VAL ASP ARG ARG GLU GLU LEU LYS LYS ALA LEU ASP LYS SEQRES 5 B 336 VAL VAL GLU GLU ALA GLU LYS ARG GLU VAL ASP LEU ILE SEQRES 6 B 336 LEU LEU THR GLY ASP LEU LEU HIS SER ARG ASN ASN PRO SEQRES 7 B 336 SER VAL VAL ALA LEU HIS ASP LEU LEU ASP TYR LEU LYS SEQRES 8 B 336 ARG MET MET ARG THR ALA PRO VAL VAL VAL LEU PRO GLY SEQRES 9 B 336 ASN HIS ASP TRP LYS GLY LEU LYS LEU PHE GLY ASN PHE SEQRES 10 B 336 VAL THR SER ILE SER SER ASP ILE THR PHE VAL MET SER SEQRES 11 B 336 PHE GLU PRO VAL ASP VAL GLU ALA LYS ARG GLY GLN LYS SEQRES 12 B 336 VAL ARG ILE LEU PRO PHE PRO TYR PRO ASP GLU SER GLU SEQRES 13 B 336 ALA LEU ARG LYS ASN GLU GLY ASP PHE ARG PHE PHE LEU SEQRES 14 B 336 GLU SER ARG LEU ASN LYS LEU TYR GLU GLU ALA LEU LYS SEQRES 15 B 336 LYS GLU ASP PHE ALA ILE PHE MET GLY HIS PHE THR VAL SEQRES 16 B 336 GLU GLY LEU ALA GLY TYR ALA GLY ILE GLU GLN GLY ARG SEQRES 17 B 336 GLU ILE ILE ILE ASN ARG ALA LEU ILE PRO SER VAL VAL SEQRES 18 B 336 ASP TYR ALA ALA LEU GLY HIS ILE HIS SER PHE ARG GLU SEQRES 19 B 336 ILE GLN LYS GLN PRO LEU THR ILE TYR PRO GLY SER LEU SEQRES 20 B 336 ILE ARG ILE ASP PHE GLY GLU GLU ALA ASP GLU LYS GLY SEQRES 21 B 336 ALA VAL PHE VAL GLU LEU LYS ARG GLY GLU PRO PRO ARG SEQRES 22 B 336 TYR GLU ARG ILE ASP ALA SER PRO LEU PRO LEU LYS THR SEQRES 23 B 336 LEU TYR TYR LYS LYS ILE ASP THR SER ALA LEU LYS SER SEQRES 24 B 336 ILE ARG ASP PHE CYS ARG ASN PHE PRO GLY TYR VAL ARG SEQRES 25 B 336 VAL VAL TYR GLU GLU ASP SER GLY ILE LEU PRO ASP LEU SEQRES 26 B 336 MET GLY GLU ILE ASP ASN LEU VAL LYS ILE GLU HET MN A 401 1 HET MN A 402 1 HET BU7 A 403 19 HET MN B 401 1 HET MN B 402 1 HET BU7 B 403 19 HET EDO B 404 4 HETNAM MN MANGANESE (II) ION HETNAM BU7 (5E)-3-BUTYL-5-[(4-HYDROXYPHENYL)METHYLIDENE]-2- HETNAM 2 BU7 SULFANYLIDENE-1,3-THIAZOLIDIN-4-ONE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MN 4(MN 2+) FORMUL 5 BU7 2(C14 H15 N O2 S2) FORMUL 9 EDO C2 H6 O2 FORMUL 10 HOH *142(H2 O) HELIX 1 AA1 ARG A 30 GLU A 49 1 20 HELIX 2 AA2 SER A 67 ARG A 83 1 17 HELIX 3 AA3 LYS A 97 SER A 110 1 14 HELIX 4 AA4 ASN A 149 LYS A 170 1 22 HELIX 5 AA5 ASN A 201 ILE A 205 5 5 HELIX 6 AA6 ASP A 239 GLU A 243 5 5 HELIX 7 AA7 ASP A 281 ASN A 294 1 14 HELIX 8 AA8 ASP A 312 ILE A 317 1 6 HELIX 9 AA9 ARG B 30 GLU B 49 1 20 HELIX 10 AB1 SER B 67 ALA B 85 1 19 HELIX 11 AB2 LYS B 97 SER B 110 1 14 HELIX 12 AB3 GLY B 151 LYS B 170 1 20 HELIX 13 AB4 ASN B 201 ILE B 205 5 5 HELIX 14 AB5 ASP B 239 GLU B 243 5 5 HELIX 15 AB6 ASP B 281 ASN B 294 1 14 HELIX 16 AB7 ASP B 312 ILE B 317 1 6 SHEET 1 AA1 6 ILE A 113 PHE A 115 0 SHEET 2 AA1 6 VAL A 87 VAL A 89 1 N VAL A 89 O THR A 114 SHEET 3 AA1 6 LEU A 52 THR A 56 1 N LEU A 55 O VAL A 88 SHEET 4 AA1 6 GLU A 6 SER A 13 1 N LEU A 10 O LEU A 54 SHEET 5 AA1 6 GLY A 248 LYS A 255 -1 O VAL A 252 N ILE A 9 SHEET 6 AA1 6 ARG A 261 ASP A 266 -1 O GLU A 263 N PHE A 251 SHEET 1 AA2 2 THR A 20 SER A 21 0 SHEET 2 AA2 2 VAL A 28 ASP A 29 -1 O VAL A 28 N SER A 21 SHEET 1 AA3 6 VAL A 122 GLU A 125 0 SHEET 2 AA3 6 LYS A 131 PHE A 137 -1 O ILE A 134 N VAL A 122 SHEET 3 AA3 6 PHE A 174 HIS A 180 1 O ILE A 176 N LEU A 135 SHEET 4 AA3 6 TYR A 211 GLY A 215 1 O ALA A 213 N PHE A 177 SHEET 5 AA3 6 THR A 229 TYR A 231 1 O ILE A 230 N LEU A 214 SHEET 6 AA3 6 ARG A 221 GLN A 224 -1 N ARG A 221 O TYR A 231 SHEET 1 AA4 2 THR A 182 VAL A 183 0 SHEET 2 AA4 2 ILE A 199 ILE A 200 1 O ILE A 200 N THR A 182 SHEET 1 AA5 3 LEU A 272 TYR A 277 0 SHEET 2 AA5 3 TYR A 298 TYR A 303 1 O ARG A 300 N LEU A 275 SHEET 3 AA5 3 LEU A 320 LYS A 322 1 O LYS A 322 N VAL A 301 SHEET 1 AA6 6 ILE B 113 PHE B 115 0 SHEET 2 AA6 6 VAL B 87 VAL B 89 1 N VAL B 89 O THR B 114 SHEET 3 AA6 6 LEU B 52 THR B 56 1 N ILE B 53 O VAL B 88 SHEET 4 AA6 6 GLU B 6 SER B 13 1 N LEU B 10 O LEU B 54 SHEET 5 AA6 6 GLY B 248 LYS B 255 -1 O VAL B 252 N ILE B 9 SHEET 6 AA6 6 ARG B 261 ASP B 266 -1 O GLU B 263 N PHE B 251 SHEET 1 AA7 2 THR B 20 SER B 21 0 SHEET 2 AA7 2 VAL B 28 ASP B 29 -1 O VAL B 28 N SER B 21 SHEET 1 AA8 6 VAL B 122 GLU B 125 0 SHEET 2 AA8 6 LYS B 131 PHE B 137 -1 O ILE B 134 N VAL B 122 SHEET 3 AA8 6 PHE B 174 HIS B 180 1 O ILE B 176 N ARG B 133 SHEET 4 AA8 6 TYR B 211 GLY B 215 1 O ALA B 213 N PHE B 177 SHEET 5 AA8 6 THR B 229 TYR B 231 1 O ILE B 230 N LEU B 214 SHEET 6 AA8 6 ARG B 221 GLN B 224 -1 N GLN B 224 O THR B 229 SHEET 1 AA9 2 THR B 182 VAL B 183 0 SHEET 2 AA9 2 ILE B 199 ILE B 200 1 O ILE B 200 N THR B 182 SHEET 1 AB1 3 LEU B 272 TYR B 277 0 SHEET 2 AB1 3 TYR B 298 TYR B 303 1 O ARG B 300 N LEU B 275 SHEET 3 AB1 3 LEU B 320 GLU B 324 1 O LYS B 322 N VAL B 301 LINK OD1 ASP A 14 MN MN A 402 1555 1555 2.47 LINK OD2 ASP A 58 MN MN A 401 1555 1555 2.66 LINK ND1 HIS A 216 MN MN A 401 1555 1555 1.89 LINK OD1 ASP B 14 MN MN B 402 1555 1555 2.70 LINK OD1 ASP B 58 MN MN B 401 1555 1555 2.62 LINK OD1 ASP B 58 MN MN B 402 1555 1555 2.64 LINK ND1 HIS B 216 MN MN B 401 1555 1555 2.02 CISPEP 1 GLN A 226 PRO A 227 0 -1.77 CISPEP 2 GLN B 226 PRO B 227 0 -1.72 SITE 1 AC1 3 ASP A 58 HIS A 180 HIS A 216 SITE 1 AC2 5 ASP A 14 HIS A 16 ASP A 58 HIS A 216 SITE 2 AC2 5 HIS A 218 SITE 1 AC3 5 ASN A 64 PRO A 66 LEU A 99 PHE A 115 SITE 2 AC3 5 HOH B 558 SITE 1 AC4 3 ASP B 58 HIS B 180 HIS B 216 SITE 1 AC5 5 ASP B 14 HIS B 16 ASP B 58 HIS B 216 SITE 2 AC5 5 HIS B 218 SITE 1 AC6 9 PHE A 102 ASN B 64 PRO B 66 HIS B 94 SITE 2 AC6 9 TRP B 96 LEU B 99 PHE B 102 VAL B 106 SITE 3 AC6 9 PHE B 115 SITE 1 AC7 4 THR B 107 SER B 110 ILE B 113 THR B 114 CRYST1 48.053 112.682 81.162 90.00 100.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020810 0.000000 0.003769 0.00000 SCALE2 0.000000 0.008875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012521 0.00000