HEADER LYASE 25-AUG-17 6ASM TITLE E. COLI PHOSPHOENOLPYRUVATE CARBOXYKINASE G209S K212C MUTANT BOUND TO TITLE 2 THIOSULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPCK; COMPND 5 EC: 4.1.1.49; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: PCKA, PCK, B3403, JW3366; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NONNATIVE LIGAND, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR H.Y.H.TANG,D.S.SHIN,J.A.TAINER REVDAT 5 13-MAR-24 6ASM 1 LINK REVDAT 4 04-DEC-19 6ASM 1 REMARK REVDAT 3 01-MAY-19 6ASM 1 JRNL REVDAT 2 21-NOV-18 6ASM 1 JRNL REVDAT 1 29-AUG-18 6ASM 0 JRNL AUTH H.Y.H.TANG,D.S.SHIN,G.L.HURA,Y.YANG,X.HU,F.C.LIGHTSTONE, JRNL AUTH 2 M.D.MCGEE,H.S.PADGETT,S.M.YANNONE,J.A.TAINER JRNL TITL STRUCTURAL CONTROL OF NONNATIVE LIGAND BINDING IN ENGINEERED JRNL TITL 2 MUTANTS OF PHOSPHOENOLPYRUVATE CARBOXYKINASE. JRNL REF BIOCHEMISTRY V. 57 6688 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 30376300 JRNL DOI 10.1021/ACS.BIOCHEM.8B00963 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 145677 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.630 REMARK 3 FREE R VALUE TEST SET COUNT : 3831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0616 - 4.6494 0.98 5438 145 0.1767 0.1909 REMARK 3 2 4.6494 - 3.6909 0.97 5417 145 0.1288 0.1338 REMARK 3 3 3.6909 - 3.2244 0.98 5401 147 0.1337 0.1498 REMARK 3 4 3.2244 - 2.9297 0.98 5440 143 0.1361 0.1405 REMARK 3 5 2.9297 - 2.7197 0.98 5441 147 0.1385 0.1435 REMARK 3 6 2.7197 - 2.5594 0.99 5485 147 0.1403 0.2043 REMARK 3 7 2.5594 - 2.4312 0.99 5492 149 0.1417 0.1762 REMARK 3 8 2.4312 - 2.3254 0.99 5494 147 0.1422 0.1840 REMARK 3 9 2.3254 - 2.2359 0.99 5428 151 0.1428 0.1746 REMARK 3 10 2.2359 - 2.1587 0.99 5550 148 0.1451 0.1909 REMARK 3 11 2.1587 - 2.0912 0.99 5495 144 0.1532 0.1699 REMARK 3 12 2.0912 - 2.0314 0.99 5500 150 0.1611 0.2036 REMARK 3 13 2.0314 - 1.9780 0.99 5497 150 0.1722 0.1830 REMARK 3 14 1.9780 - 1.9297 0.99 5504 146 0.1791 0.1678 REMARK 3 15 1.9297 - 1.8858 0.99 5540 148 0.1935 0.1918 REMARK 3 16 1.8858 - 1.8457 0.99 5452 148 0.2052 0.2480 REMARK 3 17 1.8457 - 1.8088 0.99 5548 150 0.2192 0.2008 REMARK 3 18 1.8088 - 1.7746 0.99 5484 148 0.2406 0.2686 REMARK 3 19 1.7746 - 1.7429 0.99 5460 149 0.2526 0.2862 REMARK 3 20 1.7429 - 1.7134 0.99 5530 151 0.2711 0.3387 REMARK 3 21 1.7134 - 1.6858 0.97 5406 150 0.2786 0.2674 REMARK 3 22 1.6858 - 1.6598 0.95 5257 148 0.2928 0.2878 REMARK 3 23 1.6598 - 1.6354 0.92 5127 143 0.3035 0.2470 REMARK 3 24 1.6354 - 1.6124 0.85 4679 119 0.3236 0.3709 REMARK 3 25 1.6124 - 1.5906 0.79 4430 118 0.3425 0.3524 REMARK 3 26 1.5906 - 1.5699 0.74 4067 109 0.3564 0.3638 REMARK 3 27 1.5699 - 1.5503 0.60 3284 91 0.3784 0.3684 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4221 REMARK 3 ANGLE : 1.089 5746 REMARK 3 CHIRALITY : 0.060 639 REMARK 3 PLANARITY : 0.007 741 REMARK 3 DIHEDRAL : 13.662 2461 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ASM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229763. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.008 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 145769 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 47.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 2.020 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1 M BIS-TRIS PH 5.5, REMARK 280 0.4 M SODIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.85300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.04000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.85300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.04000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 990 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1067 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1182 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1188 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1243 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 VAL A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 88 REMARK 465 LYS A 89 REMARK 465 ALA A 392 REMARK 465 GLY A 393 REMARK 465 THR A 394 REMARK 465 GLU A 395 REMARK 465 ARG A 396 REMARK 465 GLY A 397 REMARK 465 ILE A 398 REMARK 465 THR A 399 REMARK 465 HIS A 544 REMARK 465 HIS A 545 REMARK 465 HIS A 546 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 7 CG CD1 CD2 REMARK 470 GLN A 10 CG CD OE1 NE2 REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 68 CE NZ REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 GLU A 182 CD OE1 OE2 REMARK 470 ARG A 198 CD NE CZ NH1 NH2 REMARK 470 GLU A 239 CG CD OE1 OE2 REMARK 470 LYS A 240 CD CE NZ REMARK 470 LYS A 294 CD CE NZ REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 GLU A 330 CD OE1 OE2 REMARK 470 LYS A 346 CE NZ REMARK 470 LYS A 390 CG CD CE NZ REMARK 470 GLU A 400 CG CD OE1 OE2 REMARK 470 LYS A 453 CD CE NZ REMARK 470 GLU A 485 CG CD OE1 OE2 REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 GLU A 504 CG CD OE1 OE2 REMARK 470 GLU A 508 CG CD OE1 OE2 REMARK 470 LYS A 515 CD CE NZ REMARK 470 HIS A 543 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H HIS A 21 O HOH A 802 1.52 REMARK 500 HZ3 LYS A 509 O HOH A 813 1.56 REMARK 500 HE21 GLN A 507 OE2 GLU A 511 1.59 REMARK 500 O HOH A 1101 O HOH A 1225 1.80 REMARK 500 O HOH A 862 O HOH A 1179 2.01 REMARK 500 O HOH A 1186 O HOH A 1200 2.01 REMARK 500 NE2 GLN A 103 O HOH A 801 2.04 REMARK 500 O LYS A 116 O HOH A 802 2.08 REMARK 500 O HOH A 808 O HOH A 1047 2.08 REMARK 500 O HOH A 1175 O HOH A 1236 2.08 REMARK 500 O HOH A 1156 O HOH A 1161 2.17 REMARK 500 O HOH A 1152 O HOH A 1250 2.17 REMARK 500 O HOH A 887 O HOH A 1232 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 218 CG - SD - CE ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 269 -27.00 -150.09 REMARK 500 ASP A 274 -166.29 -113.42 REMARK 500 ASP A 307 -15.97 93.07 REMARK 500 ASN A 331 41.67 -87.81 REMARK 500 MET A 477 -51.97 68.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 703 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 232 NE2 REMARK 620 2 ASP A 269 OD1 92.1 REMARK 620 3 ASP A 269 OD2 87.9 51.1 REMARK 620 4 ATP A 701 O3G 103.7 93.3 143.3 REMARK 620 5 HOH A 826 O 93.5 166.1 116.4 97.7 REMARK 620 6 HOH A1108 O 157.8 90.6 76.7 98.1 79.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 255 OG1 REMARK 620 2 ATP A 701 O1G 174.0 REMARK 620 3 ATP A 701 O1B 90.7 90.7 REMARK 620 4 HOH A 831 O 85.9 100.0 87.0 REMARK 620 5 HOH A 839 O 85.1 89.0 94.4 170.9 REMARK 620 6 HOH A 899 O 89.1 89.7 177.6 90.6 87.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BTB A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THJ A 706 DBREF 6ASM A 1 540 UNP P22259 PCKA_ECOLI 1 540 SEQADV 6ASM SER A 209 UNP P22259 GLY 209 ENGINEERED MUTATION SEQADV 6ASM CYS A 212 UNP P22259 LYS 212 ENGINEERED MUTATION SEQADV 6ASM HIS A 541 UNP P22259 EXPRESSION TAG SEQADV 6ASM HIS A 542 UNP P22259 EXPRESSION TAG SEQADV 6ASM HIS A 543 UNP P22259 EXPRESSION TAG SEQADV 6ASM HIS A 544 UNP P22259 EXPRESSION TAG SEQADV 6ASM HIS A 545 UNP P22259 EXPRESSION TAG SEQADV 6ASM HIS A 546 UNP P22259 EXPRESSION TAG SEQRES 1 A 546 MET ARG VAL ASN ASN GLY LEU THR PRO GLN GLU LEU GLU SEQRES 2 A 546 ALA TYR GLY ILE SER ASP VAL HIS ASP ILE VAL TYR ASN SEQRES 3 A 546 PRO SER TYR ASP LEU LEU TYR GLN GLU GLU LEU ASP PRO SEQRES 4 A 546 SER LEU THR GLY TYR GLU ARG GLY VAL LEU THR ASN LEU SEQRES 5 A 546 GLY ALA VAL ALA VAL ASP THR GLY ILE PHE THR GLY ARG SEQRES 6 A 546 SER PRO LYS ASP LYS TYR ILE VAL ARG ASP ASP THR THR SEQRES 7 A 546 ARG ASP THR PHE TRP TRP ALA ASP LYS GLY LYS GLY LYS SEQRES 8 A 546 ASN ASP ASN LYS PRO LEU SER PRO GLU THR TRP GLN HIS SEQRES 9 A 546 LEU LYS GLY LEU VAL THR ARG GLN LEU SER GLY LYS ARG SEQRES 10 A 546 LEU PHE VAL VAL ASP ALA PHE CYS GLY ALA ASN PRO ASP SEQRES 11 A 546 THR ARG LEU SER VAL ARG PHE ILE THR GLU VAL ALA TRP SEQRES 12 A 546 GLN ALA HIS PHE VAL LYS ASN MET PHE ILE ARG PRO SER SEQRES 13 A 546 ASP GLU GLU LEU ALA GLY PHE LYS PRO ASP PHE ILE VAL SEQRES 14 A 546 MET ASN GLY ALA LYS CYS THR ASN PRO GLN TRP LYS GLU SEQRES 15 A 546 GLN GLY LEU ASN SER GLU ASN PHE VAL ALA PHE ASN LEU SEQRES 16 A 546 THR GLU ARG MET GLN LEU ILE GLY GLY THR TRP TYR GLY SEQRES 17 A 546 SER GLU MET CYS LYS GLY MET PHE SER MET MET ASN TYR SEQRES 18 A 546 LEU LEU PRO LEU LYS GLY ILE ALA SER MET HIS CYS SER SEQRES 19 A 546 ALA ASN VAL GLY GLU LYS GLY ASP VAL ALA VAL PHE PHE SEQRES 20 A 546 GLY LEU SER GLY THR GLY LYS THR THR LEU SER THR ASP SEQRES 21 A 546 PRO LYS ARG ARG LEU ILE GLY ASP ASP GLU HIS GLY TRP SEQRES 22 A 546 ASP ASP ASP GLY VAL PHE ASN PHE GLU GLY GLY CYS TYR SEQRES 23 A 546 ALA LYS THR ILE LYS LEU SER LYS GLU ALA GLU PRO GLU SEQRES 24 A 546 ILE TYR ASN ALA ILE ARG ARG ASP ALA LEU LEU GLU ASN SEQRES 25 A 546 VAL THR VAL ARG GLU ASP GLY THR ILE ASP PHE ASP ASP SEQRES 26 A 546 GLY SER LYS THR GLU ASN THR ARG VAL SER TYR PRO ILE SEQRES 27 A 546 TYR HIS ILE ASP ASN ILE VAL LYS PRO VAL SER LYS ALA SEQRES 28 A 546 GLY HIS ALA THR LYS VAL ILE PHE LEU THR ALA ASP ALA SEQRES 29 A 546 PHE GLY VAL LEU PRO PRO VAL SER ARG LEU THR ALA ASP SEQRES 30 A 546 GLN THR GLN TYR HIS PHE LEU SER GLY PHE THR ALA LYS SEQRES 31 A 546 LEU ALA GLY THR GLU ARG GLY ILE THR GLU PRO THR PRO SEQRES 32 A 546 THR PHE SER ALA CYS PHE GLY ALA ALA PHE LEU SER LEU SEQRES 33 A 546 HIS PRO THR GLN TYR ALA GLU VAL LEU VAL LYS ARG MET SEQRES 34 A 546 GLN ALA ALA GLY ALA GLN ALA TYR LEU VAL ASN THR GLY SEQRES 35 A 546 TRP ASN GLY THR GLY LYS ARG ILE SER ILE LYS ASP THR SEQRES 36 A 546 ARG ALA ILE ILE ASP ALA ILE LEU ASN GLY SER LEU ASP SEQRES 37 A 546 ASN ALA GLU THR PHE THR LEU PRO MET PHE ASN LEU ALA SEQRES 38 A 546 ILE PRO THR GLU LEU PRO GLY VAL ASP THR LYS ILE LEU SEQRES 39 A 546 ASP PRO ARG ASN THR TYR ALA SER PRO GLU GLN TRP GLN SEQRES 40 A 546 GLU LYS ALA GLU THR LEU ALA LYS LEU PHE ILE ASP ASN SEQRES 41 A 546 PHE ASP LYS TYR THR ASP THR PRO ALA GLY ALA ALA LEU SEQRES 42 A 546 VAL ALA ALA GLY PRO LYS LEU HIS HIS HIS HIS HIS HIS HET ATP A 701 31 HET MG A 702 1 HET MN A 703 1 HET XE A 704 1 HET BTB A 705 33 HET THJ A 706 5 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM MN MANGANESE (II) ION HETNAM XE XENON HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM THJ THIOSULFATE HETSYN BTB BIS-TRIS BUFFER FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 MN MN 2+ FORMUL 5 XE XE FORMUL 6 BTB C8 H19 N O5 FORMUL 7 THJ O3 S2 2- FORMUL 8 HOH *457(H2 O) HELIX 1 AA1 THR A 8 TYR A 15 1 8 HELIX 2 AA2 SER A 28 LEU A 37 1 10 HELIX 3 AA3 THR A 42 GLU A 45 5 4 HELIX 4 AA4 SER A 66 LYS A 68 5 3 HELIX 5 AA5 SER A 98 SER A 114 1 17 HELIX 6 AA6 VAL A 141 PHE A 152 1 12 HELIX 7 AA7 SER A 156 GLY A 162 1 7 HELIX 8 AA8 GLY A 208 LEU A 223 1 16 HELIX 9 AA9 PRO A 224 GLY A 227 5 4 HELIX 10 AB1 GLY A 253 THR A 259 1 7 HELIX 11 AB2 GLU A 297 ALA A 303 1 7 HELIX 12 AB3 TYR A 339 ILE A 341 5 3 HELIX 13 AB4 THR A 375 GLY A 386 1 12 HELIX 14 AB5 ALA A 407 LEU A 414 5 8 HELIX 15 AB6 HIS A 417 GLY A 433 1 17 HELIX 16 AB7 SER A 451 ASN A 464 1 14 HELIX 17 AB8 ASP A 490 ASP A 495 1 6 HELIX 18 AB9 PRO A 496 TYR A 500 5 5 HELIX 19 AC1 SER A 502 ASP A 522 1 21 HELIX 20 AC2 LYS A 523 ASP A 526 5 4 HELIX 21 AC3 THR A 527 VAL A 534 1 8 HELIX 22 AC4 ALA A 535 GLY A 537 5 3 SHEET 1 AA1 8 ASP A 22 TYR A 25 0 SHEET 2 AA1 8 ARG A 117 CYS A 125 1 O LEU A 118 N VAL A 24 SHEET 3 AA1 8 LEU A 133 THR A 139 -1 O THR A 139 N PHE A 119 SHEET 4 AA1 8 PHE A 167 GLY A 172 1 O VAL A 169 N ARG A 136 SHEET 5 AA1 8 MET A 199 GLY A 203 1 O GLN A 200 N MET A 170 SHEET 6 AA1 8 PHE A 190 ASN A 194 -1 N ALA A 192 O LEU A 201 SHEET 7 AA1 8 LYS A 70 VAL A 73 1 N VAL A 73 O PHE A 193 SHEET 8 AA1 8 LYS A 95 LEU A 97 1 O LYS A 95 N ILE A 72 SHEET 1 AA2 5 GLY A 47 LEU A 49 0 SHEET 2 AA2 5 VAL A 55 VAL A 57 -1 O ALA A 56 N VAL A 48 SHEET 3 AA2 5 LEU A 309 GLU A 311 1 O LEU A 310 N VAL A 55 SHEET 4 AA2 5 ARG A 333 PRO A 337 -1 O ARG A 333 N GLU A 311 SHEET 5 AA2 5 GLY A 284 LYS A 288 -1 N CYS A 285 O TYR A 336 SHEET 1 AA3 4 ARG A 264 GLY A 267 0 SHEET 2 AA3 4 ALA A 229 VAL A 237 -1 N VAL A 237 O ARG A 264 SHEET 3 AA3 4 GLU A 270 TRP A 273 -1 O HIS A 271 N MET A 231 SHEET 4 AA3 4 VAL A 278 ASN A 280 -1 O PHE A 279 N GLY A 272 SHEET 1 AA4 6 ARG A 264 GLY A 267 0 SHEET 2 AA4 6 ALA A 229 VAL A 237 -1 N VAL A 237 O ARG A 264 SHEET 3 AA4 6 VAL A 243 GLY A 248 -1 O ALA A 244 N ASN A 236 SHEET 4 AA4 6 ALA A 354 THR A 361 1 O LEU A 360 N PHE A 247 SHEET 5 AA4 6 GLN A 435 ASN A 440 1 O TYR A 437 N PHE A 359 SHEET 6 AA4 6 VAL A 371 ARG A 373 -1 N SER A 372 O LEU A 438 SHEET 1 AA5 2 THR A 314 VAL A 315 0 SHEET 2 AA5 2 ILE A 321 ASP A 322 -1 O ASP A 322 N THR A 314 SHEET 1 AA6 2 PHE A 387 LYS A 390 0 SHEET 2 AA6 2 THR A 402 PHE A 405 -1 O THR A 402 N LYS A 390 SHEET 1 AA7 2 THR A 472 LEU A 475 0 SHEET 2 AA7 2 LEU A 480 PRO A 483 -1 O ILE A 482 N PHE A 473 LINK NE2 HIS A 232 MN MN A 703 1555 1555 2.23 LINK OG1 THR A 255 MG MG A 702 1555 1555 2.15 LINK OD1 ASP A 269 MN MN A 703 1555 1555 2.17 LINK OD2 ASP A 269 MN MN A 703 1555 1555 2.64 LINK O1G ATP A 701 MG MG A 702 1555 1555 1.98 LINK O1B ATP A 701 MG MG A 702 1555 1555 2.00 LINK O3G ATP A 701 MN MN A 703 1555 1555 2.10 LINK MG MG A 702 O HOH A 831 1555 1555 2.04 LINK MG MG A 702 O HOH A 839 1555 1555 2.12 LINK MG MG A 702 O HOH A 899 1555 1555 2.11 LINK MN MN A 703 O HOH A 826 1555 1555 2.27 LINK MN MN A 703 O HOH A1108 1555 1555 2.17 CISPEP 1 LYS A 346 PRO A 347 0 10.25 SITE 1 AC1 29 HIS A 232 LEU A 249 SER A 250 GLY A 251 SITE 2 AC1 29 THR A 252 GLY A 253 LYS A 254 THR A 255 SITE 3 AC1 29 THR A 256 ASP A 269 LYS A 288 GLU A 297 SITE 4 AC1 29 ARG A 333 THR A 441 ARG A 449 ILE A 450 SITE 5 AC1 29 SER A 451 ILE A 452 THR A 455 MG A 702 SITE 6 AC1 29 MN A 703 HOH A 822 HOH A 831 HOH A 839 SITE 7 AC1 29 HOH A 899 HOH A 912 HOH A 914 HOH A 950 SITE 8 AC1 29 HOH A1041 SITE 1 AC2 5 THR A 255 ATP A 701 HOH A 831 HOH A 839 SITE 2 AC2 5 HOH A 899 SITE 1 AC3 5 HIS A 232 ASP A 269 ATP A 701 HOH A 826 SITE 2 AC3 5 HOH A1108 SITE 1 AC4 7 PRO A 96 LEU A 97 SER A 98 THR A 101 SITE 2 AC4 7 GLN A 183 HOH A 847 HOH A 879 SITE 1 AC5 8 ARG A 65 SER A 209 LYS A 213 ARG A 333 SITE 2 AC5 8 PHE A 413 HOH A 826 HOH A1022 HOH A1043 CRYST1 125.706 94.080 46.596 90.00 96.40 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007955 0.000000 0.000892 0.00000 SCALE2 0.000000 0.010629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021596 0.00000