HEADER PROTEIN BINDING 25-AUG-17 6ASR TITLE REV1 UBM2 DOMAIN COMPLEX WITH UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: RESIDUES 1-76; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA REPAIR PROTEIN REV1; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: RESIDUES 998-1040; COMPND 10 SYNONYM: ALPHA INTEGRIN-BINDING PROTEIN 80,AIBP80,REV1-LIKE TERMINAL COMPND 11 DEOXYCYTIDYL TRANSFERASE; COMPND 12 EC: 2.7.7.-; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: REV1, REV1L; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITIN-BINDING MOTIF, PROTEIN-PROTEIN INTERACTION, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR D.J.MILLER REVDAT 3 04-OCT-23 6ASR 1 LINK REVDAT 2 08-AUG-18 6ASR 1 JRNL REVDAT 1 20-JUN-18 6ASR 0 JRNL AUTH M.VANAROTTI,C.R.GRACE,D.J.MILLER,M.L.ACTIS,A.INOUE, JRNL AUTH 2 B.J.EVISON,S.VAITHIYALINGAM,A.P.SINGH,E.T.MCDONALD,N.FUJII JRNL TITL STRUCTURES OF REV1 UBM2 DOMAIN COMPLEX WITH UBIQUITIN AND JRNL TITL 2 WITH A SMALL-MOLECULE THAT INHIBITS THE REV1 UBM2-UBIQUITIN JRNL TITL 3 INTERACTION. JRNL REF J. MOL. BIOL. V. 430 2857 2018 JRNL REFN ESSN 1089-8638 JRNL PMID 29864443 JRNL DOI 10.1016/J.JMB.2018.05.042 REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 16000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.390 REMARK 3 FREE R VALUE TEST SET COUNT : 863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.2863 - 4.2763 0.96 2575 159 0.1755 0.2132 REMARK 3 2 4.2763 - 3.3960 0.99 2522 165 0.1854 0.2182 REMARK 3 3 3.3960 - 2.9673 1.00 2524 134 0.2120 0.2310 REMARK 3 4 2.9673 - 2.6962 1.00 2502 143 0.2271 0.2346 REMARK 3 5 2.6962 - 2.5031 1.00 2518 124 0.2342 0.2760 REMARK 3 6 2.5031 - 2.3556 1.00 2496 138 0.2554 0.2880 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1509 REMARK 3 ANGLE : 0.490 2014 REMARK 3 CHIRALITY : 0.043 241 REMARK 3 PLANARITY : 0.004 262 REMARK 3 DIHEDRAL : 18.474 936 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ASR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229770. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16003 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.53200 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4S1Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0, 10 % PEG 8000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 27555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 28555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 31555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 32555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 35555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 36555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 37555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 38555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 39555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 40555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 41555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 42555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 43555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 44555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 45555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 46555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 47555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 48555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 82.46200 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 82.46200 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 82.46200 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 82.46200 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 82.46200 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 82.46200 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 82.46200 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 82.46200 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 82.46200 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 82.46200 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 82.46200 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 82.46200 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 82.46200 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 82.46200 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 82.46200 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 82.46200 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 82.46200 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 82.46200 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 82.46200 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 82.46200 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 82.46200 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 82.46200 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 82.46200 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 82.46200 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 82.46200 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 82.46200 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 82.46200 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 82.46200 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 82.46200 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 82.46200 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 82.46200 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 82.46200 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 82.46200 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 82.46200 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 82.46200 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 82.46200 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 82.46200 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 82.46200 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 82.46200 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 82.46200 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 82.46200 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 82.46200 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 82.46200 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 82.46200 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 82.46200 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 82.46200 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 82.46200 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 82.46200 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 82.46200 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 82.46200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1208 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 990 REMARK 465 SER B 991 REMARK 465 ILE B 992 REMARK 465 LYS B 993 REMARK 465 SER B 994 REMARK 465 SER B 995 REMARK 465 GLY B 996 REMARK 465 LEU B 997 REMARK 465 GLU B 998 REMARK 465 SER B 999 REMARK 465 ASN B 1000 REMARK 465 GLN B 1040 REMARK 465 GLY C 75 REMARK 465 GLY C 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 ASP B1002 CG OD1 OD2 REMARK 470 PHE B1013 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B1038 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 1019 OD2 ASP C 39 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG C 72 79.10 -152.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 102 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 11 NZ REMARK 620 2 GLU A 34 OE2 85.0 REMARK 620 3 HOH A 227 O 95.4 134.2 REMARK 620 4 HIS C 68 NE2 16.7 100.1 79.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 101 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 24 OE1 REMARK 620 2 ASP A 39 OD1 122.4 REMARK 620 3 ASP A 39 OD2 126.6 11.0 REMARK 620 4 ASP A 52 OD2 92.2 113.5 121.1 REMARK 620 5 HOH A 204 O 87.0 40.1 49.7 100.1 REMARK 620 6 HOH A 222 O 173.2 57.4 51.8 93.9 94.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B1101 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1017 OD1 REMARK 620 2 ASP B1017 OD2 67.1 REMARK 620 3 GLU B1019 OE1 110.2 76.7 REMARK 620 4 GLU B1019 OE2 117.0 143.5 67.8 REMARK 620 5 HOH B1209 O 94.9 126.0 152.2 90.4 REMARK 620 6 ASP C 39 OD2 140.4 73.4 56.0 93.1 110.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 101 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 24 OE1 REMARK 620 2 ASP C 52 OD2 95.9 REMARK 620 3 HOH C 209 O 96.2 88.2 REMARK 620 4 HOH C 223 O 113.1 125.2 130.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI C 101 DBREF 6ASR A 1 76 UNP P0CG47 UBB_HUMAN 1 76 DBREF 6ASR B 998 1040 UNP Q9UBZ9 REV1_HUMAN 998 1040 DBREF 6ASR C 1 76 UNP P0CG47 UBB_HUMAN 1 76 SEQADV 6ASR GLY B 990 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6ASR SER B 991 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6ASR ILE B 992 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6ASR LYS B 993 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6ASR SER B 994 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6ASR SER B 995 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6ASR GLY B 996 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6ASR LEU B 997 UNP Q9UBZ9 EXPRESSION TAG SEQRES 1 A 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 B 51 GLY SER ILE LYS SER SER GLY LEU GLU SER ASN SER ASP SEQRES 2 B 51 ALA GLY ILE ASN LEU ILE ALA LEU PRO ALA PHE SER GLN SEQRES 3 B 51 VAL ASP PRO GLU VAL PHE ALA ALA LEU PRO ALA GLU LEU SEQRES 4 B 51 GLN ARG GLU LEU LYS ALA ALA TYR ASP GLN ARG GLN SEQRES 1 C 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 C 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 C 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 C 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 C 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 C 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET NI A 101 1 HET NI A 102 1 HET NI B1101 1 HET NI C 101 1 HETNAM NI NICKEL (II) ION FORMUL 4 NI 4(NI 2+) FORMUL 8 HOH *73(H2 O) HELIX 1 AA1 THR A 22 GLY A 35 1 14 HELIX 2 AA2 PRO A 37 ASP A 39 5 3 HELIX 3 AA3 LEU A 56 ASN A 60 5 5 HELIX 4 AA4 ALA B 1003 LEU B 1010 1 8 HELIX 5 AA5 ALA B 1012 VAL B 1016 5 5 HELIX 6 AA6 ASP B 1017 ALA B 1023 1 7 HELIX 7 AA7 PRO B 1025 GLN B 1038 1 14 HELIX 8 AA8 THR C 22 GLY C 35 1 14 HELIX 9 AA9 PRO C 37 ASP C 39 5 3 HELIX 10 AB1 LEU C 56 ASN C 60 5 5 SHEET 1 AA1 5 THR A 12 GLU A 16 0 SHEET 2 AA1 5 GLN A 2 LYS A 6 -1 N VAL A 5 O ILE A 13 SHEET 3 AA1 5 THR A 66 LEU A 71 1 O LEU A 67 N PHE A 4 SHEET 4 AA1 5 GLN A 41 PHE A 45 -1 N ARG A 42 O VAL A 70 SHEET 5 AA1 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 AA2 5 THR C 12 GLU C 16 0 SHEET 2 AA2 5 GLN C 2 THR C 7 -1 N VAL C 5 O ILE C 13 SHEET 3 AA2 5 THR C 66 LEU C 71 1 O LEU C 69 N LYS C 6 SHEET 4 AA2 5 GLN C 41 PHE C 45 -1 N ARG C 42 O VAL C 70 SHEET 5 AA2 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 LINK NZ LYS A 11 NI NI A 102 1555 1555 1.94 LINK OE1 GLU A 24 NI NI A 101 1555 1555 1.99 LINK OE2 GLU A 34 NI NI A 102 1555 1555 1.94 LINK OD1 ASP A 39 NI NI A 101 1555 14555 2.53 LINK OD2 ASP A 39 NI NI A 101 1555 14555 2.15 LINK OD2 ASP A 52 NI NI A 101 1555 1555 1.98 LINK NI NI A 101 O HOH A 204 1555 1555 2.07 LINK NI NI A 101 O HOH A 222 1555 14555 2.09 LINK NI NI A 102 O HOH A 227 1555 1555 2.14 LINK NI NI A 102 NE2 HIS C 68 12555 1555 2.03 LINK OD1 ASP B1017 NI NI B1101 1555 1555 2.02 LINK OD2 ASP B1017 NI NI B1101 1555 1555 1.99 LINK OE1 GLU B1019 NI NI B1101 1555 1555 1.95 LINK OE2 GLU B1019 NI NI B1101 1555 1555 2.00 LINK NI NI B1101 O HOH B1209 1555 1555 2.06 LINK NI NI B1101 OD2 ASP C 39 1555 1555 2.01 LINK OE1 GLU C 24 NI NI C 101 1555 1555 1.97 LINK OD2 ASP C 52 NI NI C 101 1555 1555 1.97 LINK NI NI C 101 O HOH C 209 1555 1555 2.17 LINK NI NI C 101 O HOH C 223 1555 1555 2.17 SITE 1 AC1 5 GLU A 24 ASP A 39 ASP A 52 HOH A 204 SITE 2 AC1 5 HOH A 222 SITE 1 AC2 5 LYS A 11 GLU A 34 HOH A 227 HOH A 232 SITE 2 AC2 5 HIS C 68 SITE 1 AC3 4 ASP B1017 GLU B1019 HOH B1209 ASP C 39 SITE 1 AC4 4 GLU C 24 ASP C 52 HOH C 209 HOH C 223 CRYST1 164.924 164.924 164.924 90.00 90.00 90.00 I 4 3 2 96 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006063 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006063 0.00000