HEADER LYASE 27-AUG-17 6AT2 TITLE E. COLI PHOSPHOENOLPYRUVATE CARBOXYKINASE G209N MUTANT BOUND TO TITLE 2 THIOSULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPCK; COMPND 5 EC: 4.1.1.49; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: PCKA, PCK, B3403, JW3366; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NONNATIVE LIGAND, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR H.Y.H.TANG,D.S.SHIN,J.A.TAINER REVDAT 5 04-OCT-23 6AT2 1 LINK REVDAT 4 04-DEC-19 6AT2 1 REMARK REVDAT 3 01-MAY-19 6AT2 1 JRNL REVDAT 2 21-NOV-18 6AT2 1 JRNL REVDAT 1 29-AUG-18 6AT2 0 JRNL AUTH H.Y.H.TANG,D.S.SHIN,G.L.HURA,Y.YANG,X.HU,F.C.LIGHTSTONE, JRNL AUTH 2 M.D.MCGEE,H.S.PADGETT,S.M.YANNONE,J.A.TAINER JRNL TITL STRUCTURAL CONTROL OF NONNATIVE LIGAND BINDING IN ENGINEERED JRNL TITL 2 MUTANTS OF PHOSPHOENOLPYRUVATE CARBOXYKINASE. JRNL REF BIOCHEMISTRY V. 57 6688 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 30376300 JRNL DOI 10.1021/ACS.BIOCHEM.8B00963 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 182893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.160 REMARK 3 FREE R VALUE TEST SET COUNT : 3952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2052 - 4.3844 0.99 6602 146 0.1504 0.1921 REMARK 3 2 4.3844 - 3.4804 0.99 6577 146 0.1326 0.1225 REMARK 3 3 3.4804 - 3.0405 0.98 6529 147 0.1493 0.1822 REMARK 3 4 3.0405 - 2.7626 0.98 6511 144 0.1555 0.1614 REMARK 3 5 2.7626 - 2.5646 0.98 6508 142 0.1518 0.1628 REMARK 3 6 2.5646 - 2.4134 0.98 6532 145 0.1485 0.1673 REMARK 3 7 2.4134 - 2.2925 0.98 6496 142 0.1449 0.1591 REMARK 3 8 2.2925 - 2.1927 0.98 6438 140 0.1463 0.1965 REMARK 3 9 2.1927 - 2.1083 0.98 6499 145 0.1448 0.1482 REMARK 3 10 2.1083 - 2.0355 0.97 6497 145 0.1533 0.1967 REMARK 3 11 2.0355 - 1.9719 0.97 6446 144 0.1616 0.1641 REMARK 3 12 1.9719 - 1.9155 0.97 6430 140 0.1660 0.1831 REMARK 3 13 1.9155 - 1.8651 0.98 6430 144 0.1677 0.2002 REMARK 3 14 1.8651 - 1.8196 0.96 6354 140 0.1786 0.2244 REMARK 3 15 1.8196 - 1.7782 0.97 6463 141 0.1943 0.2197 REMARK 3 16 1.7782 - 1.7404 0.96 6416 141 0.1996 0.2503 REMARK 3 17 1.7404 - 1.7056 0.96 6417 144 0.2129 0.2846 REMARK 3 18 1.7056 - 1.6734 0.96 6346 140 0.2165 0.2346 REMARK 3 19 1.6734 - 1.6435 0.96 6372 141 0.2251 0.2570 REMARK 3 20 1.6435 - 1.6156 0.95 6288 138 0.2486 0.2700 REMARK 3 21 1.6156 - 1.5896 0.96 6378 138 0.2582 0.2854 REMARK 3 22 1.5896 - 1.5651 0.95 6281 142 0.2748 0.3004 REMARK 3 23 1.5651 - 1.5421 0.95 6332 137 0.2915 0.3059 REMARK 3 24 1.5421 - 1.5204 0.95 6299 140 0.3009 0.2854 REMARK 3 25 1.5204 - 1.4998 0.95 6226 138 0.3141 0.3365 REMARK 3 26 1.4998 - 1.4803 0.94 6260 136 0.3224 0.2983 REMARK 3 27 1.4803 - 1.4618 0.95 6286 141 0.3386 0.3357 REMARK 3 28 1.4618 - 1.4442 0.85 5728 125 0.3820 0.3490 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4229 REMARK 3 ANGLE : 1.035 5776 REMARK 3 CHIRALITY : 0.077 646 REMARK 3 PLANARITY : 0.007 745 REMARK 3 DIHEDRAL : 16.944 1486 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AT2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1158 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 182988 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.444 REMARK 200 RESOLUTION RANGE LOW (A) : 47.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 1.37100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2OLQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 3350, 0.4 M SODIUM CHLORIDE, REMARK 280 0.1 M BIS-TRIS PH 5.5, 0.1 M SODIUM THIOSULFATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.58550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.18000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.58550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.18000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 985 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1007 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1106 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 VAL A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 88 REMARK 465 LYS A 89 REMARK 465 HIS A 543 REMARK 465 HIS A 544 REMARK 465 HIS A 545 REMARK 465 HIS A 546 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 68 NZ REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 GLU A 239 CG CD OE1 OE2 REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 LYS A 262 CE NZ REMARK 470 LYS A 291 CE NZ REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 GLU A 299 CD OE1 OE2 REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 GLU A 330 CG CD OE1 OE2 REMARK 470 ARG A 373 NE CZ NH1 NH2 REMARK 470 LYS A 390 CG CD CE NZ REMARK 470 GLU A 395 CG CD OE1 OE2 REMARK 470 ARG A 396 CD NE CZ NH1 NH2 REMARK 470 GLU A 400 CG CD OE1 OE2 REMARK 470 GLN A 435 CG CD OE1 NE2 REMARK 470 LYS A 453 CG CD CE NZ REMARK 470 ASN A 469 CG OD1 ND2 REMARK 470 GLU A 485 CG CD OE1 OE2 REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 GLU A 504 CG CD OE1 OE2 REMARK 470 GLU A 508 CG CD OE1 OE2 REMARK 470 LYS A 509 CD CE NZ REMARK 470 LYS A 515 CD CE NZ REMARK 470 ASP A 526 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 213 MN MN A 702 1.42 REMARK 500 H HIS A 21 O HOH A 802 1.59 REMARK 500 H HIS A 21 O HOH A 802 1.60 REMARK 500 OD1 ASP A 58 O HOH A 801 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 269 -31.99 -152.86 REMARK 500 ASP A 274 -166.69 -112.44 REMARK 500 ASP A 307 -13.13 93.52 REMARK 500 THR A 329 151.26 178.27 REMARK 500 ASN A 331 45.88 -88.26 REMARK 500 GLU A 400 77.56 -105.92 REMARK 500 MET A 477 -58.77 72.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 702 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 213 NZ REMARK 620 2 HIS A 232 NE2 87.0 REMARK 620 3 ASP A 269 OD1 102.5 89.9 REMARK 620 4 ATP A 701 O3G 169.8 95.0 87.4 REMARK 620 5 HOH A1010 O 90.9 173.4 84.5 88.2 REMARK 620 6 HOH A1033 O 89.1 98.2 166.1 80.7 87.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 703 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 255 OG1 REMARK 620 2 ATP A 701 O2G 170.9 REMARK 620 3 ATP A 701 O2B 90.7 90.7 REMARK 620 4 HOH A 805 O 88.2 100.7 89.9 REMARK 620 5 HOH A 814 O 84.9 86.1 91.3 173.0 REMARK 620 6 HOH A 840 O 92.3 86.2 176.8 91.2 88.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THJ A 705 DBREF 6AT2 A 1 540 UNP P22259 PCKA_ECOLI 1 540 SEQADV 6AT2 ASN A 209 UNP P22259 GLY 209 ENGINEERED MUTATION SEQADV 6AT2 HIS A 541 UNP P22259 EXPRESSION TAG SEQADV 6AT2 HIS A 542 UNP P22259 EXPRESSION TAG SEQADV 6AT2 HIS A 543 UNP P22259 EXPRESSION TAG SEQADV 6AT2 HIS A 544 UNP P22259 EXPRESSION TAG SEQADV 6AT2 HIS A 545 UNP P22259 EXPRESSION TAG SEQADV 6AT2 HIS A 546 UNP P22259 EXPRESSION TAG SEQRES 1 A 546 MET ARG VAL ASN ASN GLY LEU THR PRO GLN GLU LEU GLU SEQRES 2 A 546 ALA TYR GLY ILE SER ASP VAL HIS ASP ILE VAL TYR ASN SEQRES 3 A 546 PRO SER TYR ASP LEU LEU TYR GLN GLU GLU LEU ASP PRO SEQRES 4 A 546 SER LEU THR GLY TYR GLU ARG GLY VAL LEU THR ASN LEU SEQRES 5 A 546 GLY ALA VAL ALA VAL ASP THR GLY ILE PHE THR GLY ARG SEQRES 6 A 546 SER PRO LYS ASP LYS TYR ILE VAL ARG ASP ASP THR THR SEQRES 7 A 546 ARG ASP THR PHE TRP TRP ALA ASP LYS GLY LYS GLY LYS SEQRES 8 A 546 ASN ASP ASN LYS PRO LEU SER PRO GLU THR TRP GLN HIS SEQRES 9 A 546 LEU LYS GLY LEU VAL THR ARG GLN LEU SER GLY LYS ARG SEQRES 10 A 546 LEU PHE VAL VAL ASP ALA PHE CYS GLY ALA ASN PRO ASP SEQRES 11 A 546 THR ARG LEU SER VAL ARG PHE ILE THR GLU VAL ALA TRP SEQRES 12 A 546 GLN ALA HIS PHE VAL LYS ASN MET PHE ILE ARG PRO SER SEQRES 13 A 546 ASP GLU GLU LEU ALA GLY PHE LYS PRO ASP PHE ILE VAL SEQRES 14 A 546 MET ASN GLY ALA LYS CYS THR ASN PRO GLN TRP LYS GLU SEQRES 15 A 546 GLN GLY LEU ASN SER GLU ASN PHE VAL ALA PHE ASN LEU SEQRES 16 A 546 THR GLU ARG MET GLN LEU ILE GLY GLY THR TRP TYR GLY SEQRES 17 A 546 ASN GLU MET LYS LYS GLY MET PHE SER MET MET ASN TYR SEQRES 18 A 546 LEU LEU PRO LEU LYS GLY ILE ALA SER MET HIS CYS SER SEQRES 19 A 546 ALA ASN VAL GLY GLU LYS GLY ASP VAL ALA VAL PHE PHE SEQRES 20 A 546 GLY LEU SER GLY THR GLY LYS THR THR LEU SER THR ASP SEQRES 21 A 546 PRO LYS ARG ARG LEU ILE GLY ASP ASP GLU HIS GLY TRP SEQRES 22 A 546 ASP ASP ASP GLY VAL PHE ASN PHE GLU GLY GLY CYS TYR SEQRES 23 A 546 ALA LYS THR ILE LYS LEU SER LYS GLU ALA GLU PRO GLU SEQRES 24 A 546 ILE TYR ASN ALA ILE ARG ARG ASP ALA LEU LEU GLU ASN SEQRES 25 A 546 VAL THR VAL ARG GLU ASP GLY THR ILE ASP PHE ASP ASP SEQRES 26 A 546 GLY SER LYS THR GLU ASN THR ARG VAL SER TYR PRO ILE SEQRES 27 A 546 TYR HIS ILE ASP ASN ILE VAL LYS PRO VAL SER LYS ALA SEQRES 28 A 546 GLY HIS ALA THR LYS VAL ILE PHE LEU THR ALA ASP ALA SEQRES 29 A 546 PHE GLY VAL LEU PRO PRO VAL SER ARG LEU THR ALA ASP SEQRES 30 A 546 GLN THR GLN TYR HIS PHE LEU SER GLY PHE THR ALA LYS SEQRES 31 A 546 LEU ALA GLY THR GLU ARG GLY ILE THR GLU PRO THR PRO SEQRES 32 A 546 THR PHE SER ALA CYS PHE GLY ALA ALA PHE LEU SER LEU SEQRES 33 A 546 HIS PRO THR GLN TYR ALA GLU VAL LEU VAL LYS ARG MET SEQRES 34 A 546 GLN ALA ALA GLY ALA GLN ALA TYR LEU VAL ASN THR GLY SEQRES 35 A 546 TRP ASN GLY THR GLY LYS ARG ILE SER ILE LYS ASP THR SEQRES 36 A 546 ARG ALA ILE ILE ASP ALA ILE LEU ASN GLY SER LEU ASP SEQRES 37 A 546 ASN ALA GLU THR PHE THR LEU PRO MET PHE ASN LEU ALA SEQRES 38 A 546 ILE PRO THR GLU LEU PRO GLY VAL ASP THR LYS ILE LEU SEQRES 39 A 546 ASP PRO ARG ASN THR TYR ALA SER PRO GLU GLN TRP GLN SEQRES 40 A 546 GLU LYS ALA GLU THR LEU ALA LYS LEU PHE ILE ASP ASN SEQRES 41 A 546 PHE ASP LYS TYR THR ASP THR PRO ALA GLY ALA ALA LEU SEQRES 42 A 546 VAL ALA ALA GLY PRO LYS LEU HIS HIS HIS HIS HIS HIS HET ATP A 701 31 HET MN A 702 1 HET MG A 703 1 HET TRS A 704 20 HET THJ A 705 5 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM THJ THIOSULFATE HETSYN TRS TRIS BUFFER FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 MN MN 2+ FORMUL 4 MG MG 2+ FORMUL 5 TRS C4 H12 N O3 1+ FORMUL 6 THJ O3 S2 2- FORMUL 7 HOH *342(H2 O) HELIX 1 AA1 THR A 8 TYR A 15 1 8 HELIX 2 AA2 SER A 28 LEU A 37 1 10 HELIX 3 AA3 THR A 42 GLU A 45 5 4 HELIX 4 AA4 SER A 66 LYS A 68 5 3 HELIX 5 AA5 SER A 98 SER A 114 1 17 HELIX 6 AA6 VAL A 141 PHE A 152 1 12 HELIX 7 AA7 SER A 156 GLY A 162 1 7 HELIX 8 AA8 GLY A 208 LEU A 223 1 16 HELIX 9 AA9 PRO A 224 GLY A 227 5 4 HELIX 10 AB1 GLY A 253 THR A 259 1 7 HELIX 11 AB2 GLU A 297 ALA A 303 1 7 HELIX 12 AB3 TYR A 339 ILE A 341 5 3 HELIX 13 AB4 THR A 375 GLY A 386 1 12 HELIX 14 AB5 GLY A 393 GLY A 397 5 5 HELIX 15 AB6 ALA A 407 LEU A 414 5 8 HELIX 16 AB7 HIS A 417 GLY A 433 1 17 HELIX 17 AB8 SER A 451 ASN A 464 1 14 HELIX 18 AB9 SER A 466 ALA A 470 5 5 HELIX 19 AC1 ASP A 490 ASP A 495 1 6 HELIX 20 AC2 PRO A 496 TYR A 500 5 5 HELIX 21 AC3 SER A 502 ASP A 522 1 21 HELIX 22 AC4 LYS A 523 THR A 525 5 3 HELIX 23 AC5 THR A 527 VAL A 534 1 8 HELIX 24 AC6 ALA A 535 GLY A 537 5 3 SHEET 1 AA1 8 ILE A 23 TYR A 25 0 SHEET 2 AA1 8 LEU A 118 CYS A 125 1 O LEU A 118 N VAL A 24 SHEET 3 AA1 8 LEU A 133 THR A 139 -1 O PHE A 137 N VAL A 121 SHEET 4 AA1 8 PHE A 167 GLY A 172 1 O VAL A 169 N ARG A 136 SHEET 5 AA1 8 MET A 199 GLY A 203 1 O ILE A 202 N GLY A 172 SHEET 6 AA1 8 PHE A 190 ASN A 194 -1 N PHE A 190 O GLY A 203 SHEET 7 AA1 8 LYS A 70 VAL A 73 1 N VAL A 73 O PHE A 193 SHEET 8 AA1 8 LYS A 95 LEU A 97 1 O LYS A 95 N ILE A 72 SHEET 1 AA2 5 GLY A 47 LEU A 49 0 SHEET 2 AA2 5 VAL A 55 VAL A 57 -1 O ALA A 56 N VAL A 48 SHEET 3 AA2 5 LEU A 309 GLU A 311 1 O LEU A 310 N VAL A 57 SHEET 4 AA2 5 ARG A 333 PRO A 337 -1 O ARG A 333 N GLU A 311 SHEET 5 AA2 5 GLY A 284 LYS A 288 -1 N CYS A 285 O TYR A 336 SHEET 1 AA3 4 ARG A 264 GLY A 267 0 SHEET 2 AA3 4 ALA A 229 VAL A 237 -1 N VAL A 237 O ARG A 264 SHEET 3 AA3 4 GLU A 270 TRP A 273 -1 O HIS A 271 N MET A 231 SHEET 4 AA3 4 VAL A 278 ASN A 280 -1 O PHE A 279 N GLY A 272 SHEET 1 AA4 6 ARG A 264 GLY A 267 0 SHEET 2 AA4 6 ALA A 229 VAL A 237 -1 N VAL A 237 O ARG A 264 SHEET 3 AA4 6 VAL A 243 GLY A 248 -1 O PHE A 246 N SER A 234 SHEET 4 AA4 6 ALA A 354 THR A 361 1 O LEU A 360 N PHE A 247 SHEET 5 AA4 6 GLN A 435 ASN A 440 1 O TYR A 437 N PHE A 359 SHEET 6 AA4 6 VAL A 371 LEU A 374 -1 N SER A 372 O LEU A 438 SHEET 1 AA5 2 THR A 314 VAL A 315 0 SHEET 2 AA5 2 ILE A 321 ASP A 322 -1 O ASP A 322 N THR A 314 SHEET 1 AA6 2 PHE A 387 LEU A 391 0 SHEET 2 AA6 2 PRO A 401 PHE A 405 -1 O THR A 404 N THR A 388 SHEET 1 AA7 2 THR A 472 LEU A 475 0 SHEET 2 AA7 2 LEU A 480 PRO A 483 -1 O ILE A 482 N PHE A 473 LINK NZ LYS A 213 MN MN A 702 1555 1555 2.28 LINK NE2 HIS A 232 MN MN A 702 1555 1555 2.22 LINK OG1 THR A 255 MG MG A 703 1555 1555 2.17 LINK OD1 ASP A 269 MN MN A 702 1555 1555 2.24 LINK O3G ATP A 701 MN MN A 702 1555 1555 2.24 LINK O2G ATP A 701 MG MG A 703 1555 1555 2.09 LINK O2B ATP A 701 MG MG A 703 1555 1555 2.08 LINK MN MN A 702 O HOH A1010 1555 1555 2.23 LINK MN MN A 702 O HOH A1033 1555 1555 2.33 LINK MG MG A 703 O HOH A 805 1555 1555 2.17 LINK MG MG A 703 O HOH A 814 1555 1555 2.16 LINK MG MG A 703 O HOH A 840 1555 1555 2.14 CISPEP 1 LYS A 346 PRO A 347 0 8.05 SITE 1 AC1 30 HIS A 232 LEU A 249 SER A 250 GLY A 251 SITE 2 AC1 30 THR A 252 GLY A 253 LYS A 254 THR A 255 SITE 3 AC1 30 THR A 256 ASP A 269 LYS A 288 GLU A 297 SITE 4 AC1 30 ARG A 333 THR A 441 ARG A 449 ILE A 450 SITE 5 AC1 30 SER A 451 ILE A 452 THR A 455 MN A 702 SITE 6 AC1 30 MG A 703 HOH A 805 HOH A 814 HOH A 840 SITE 7 AC1 30 HOH A 890 HOH A 912 HOH A 925 HOH A 928 SITE 8 AC1 30 HOH A1010 HOH A1033 SITE 1 AC2 6 LYS A 213 HIS A 232 ASP A 269 ATP A 701 SITE 2 AC2 6 HOH A1010 HOH A1033 SITE 1 AC3 5 THR A 255 ATP A 701 HOH A 805 HOH A 814 SITE 2 AC3 5 HOH A 840 SITE 1 AC4 4 SER A 98 THR A 101 GLN A 183 HOH A 860 SITE 1 AC5 7 ARG A 65 TYR A 207 ASN A 209 ASN A 331 SITE 2 AC5 7 HOH A 827 HOH A 853 HOH A 947 CRYST1 125.171 94.360 46.559 90.00 96.40 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007989 0.000000 0.000896 0.00000 SCALE2 0.000000 0.010598 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021613 0.00000