HEADER LYASE 27-AUG-17 6AT3 TITLE E. COLI PHOSPHOENOLPYRUVATE CARBOXYKINASE Y207F MUTANT BOUND TO TITLE 2 THIOSULFATE AND OXALOACETATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PEPCK; COMPND 5 EC: 4.1.1.49; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: PCKA, PCK, B3403, JW3366; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NONNATIVE LIGAND, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR H.Y.H.TANG,D.S.SHIN,J.A.TAINER REVDAT 5 04-OCT-23 6AT3 1 REMARK REVDAT 4 04-DEC-19 6AT3 1 REMARK REVDAT 3 01-MAY-19 6AT3 1 JRNL REVDAT 2 21-NOV-18 6AT3 1 JRNL REVDAT 1 29-AUG-18 6AT3 0 JRNL AUTH H.Y.H.TANG,D.S.SHIN,G.L.HURA,Y.YANG,X.HU,F.C.LIGHTSTONE, JRNL AUTH 2 M.D.MCGEE,H.S.PADGETT,S.M.YANNONE,J.A.TAINER JRNL TITL STRUCTURAL CONTROL OF NONNATIVE LIGAND BINDING IN ENGINEERED JRNL TITL 2 MUTANTS OF PHOSPHOENOLPYRUVATE CARBOXYKINASE. JRNL REF BIOCHEMISTRY V. 57 6688 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 30376300 JRNL DOI 10.1021/ACS.BIOCHEM.8B00963 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 403145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 0.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3600 - 4.4182 0.97 14095 139 0.1633 0.1656 REMARK 3 2 4.4182 - 3.5072 1.00 14506 134 0.1392 0.1450 REMARK 3 3 3.5072 - 3.0640 0.99 14379 143 0.1568 0.1716 REMARK 3 4 3.0640 - 2.7839 0.99 14388 139 0.1742 0.1860 REMARK 3 5 2.7839 - 2.5843 0.99 14422 140 0.1865 0.2271 REMARK 3 6 2.5843 - 2.4320 0.99 14450 138 0.1979 0.1961 REMARK 3 7 2.4320 - 2.3102 1.00 14484 139 0.2035 0.2042 REMARK 3 8 2.3102 - 2.2096 1.00 14469 135 0.2131 0.2832 REMARK 3 9 2.2096 - 2.1246 1.00 14431 138 0.2141 0.2190 REMARK 3 10 2.1246 - 2.0512 0.99 14424 140 0.2167 0.1926 REMARK 3 11 2.0512 - 1.9871 0.99 14433 139 0.2185 0.2872 REMARK 3 12 1.9871 - 1.9303 0.99 14416 140 0.2213 0.2623 REMARK 3 13 1.9303 - 1.8795 0.99 14388 137 0.2320 0.3005 REMARK 3 14 1.8795 - 1.8336 0.99 14465 139 0.2311 0.2821 REMARK 3 15 1.8336 - 1.7919 0.99 14343 138 0.2332 0.2847 REMARK 3 16 1.7919 - 1.7538 0.99 14335 140 0.2314 0.2759 REMARK 3 17 1.7538 - 1.7187 0.99 14427 141 0.2423 0.2842 REMARK 3 18 1.7187 - 1.6863 0.99 14302 136 0.2530 0.2857 REMARK 3 19 1.6863 - 1.6562 0.99 14303 138 0.2630 0.3029 REMARK 3 20 1.6562 - 1.6281 0.99 14400 141 0.2791 0.3703 REMARK 3 21 1.6281 - 1.6018 0.98 14237 132 0.2905 0.4030 REMARK 3 22 1.6018 - 1.5772 0.98 14258 138 0.3043 0.3359 REMARK 3 23 1.5772 - 1.5540 0.98 14308 139 0.3130 0.3244 REMARK 3 24 1.5540 - 1.5321 0.98 14205 140 0.3389 0.4076 REMARK 3 25 1.5321 - 1.5114 0.98 14224 138 0.3671 0.4095 REMARK 3 26 1.5114 - 1.4918 0.98 14265 140 0.3767 0.4039 REMARK 3 27 1.4918 - 1.4731 0.97 14026 138 0.4061 0.3878 REMARK 3 28 1.4731 - 1.4554 0.82 11911 112 0.4539 0.4471 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 8381 REMARK 3 ANGLE : 0.910 11412 REMARK 3 CHIRALITY : 0.073 1273 REMARK 3 PLANARITY : 0.006 1488 REMARK 3 DIHEDRAL : 15.982 2962 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AT3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229781. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1158 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 208965 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.455 REMARK 200 RESOLUTION RANGE LOW (A) : 47.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.08447 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 1.71700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2OLQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 3350, 0.4 M SODIUM CHLORIDE, REMARK 280 0.1 M BIS-TRIS PH 5.5, 0.1 M SODIUM THIOSULFATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.33500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.24350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.92850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.24350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.33500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.92850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 VAL A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 HIS A 542 REMARK 465 HIS A 543 REMARK 465 HIS A 544 REMARK 465 HIS A 545 REMARK 465 HIS A 546 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 VAL B 3 REMARK 465 ASN B 4 REMARK 465 ASN B 5 REMARK 465 GLY B 6 REMARK 465 HIS B 541 REMARK 465 HIS B 542 REMARK 465 HIS B 543 REMARK 465 HIS B 544 REMARK 465 HIS B 545 REMARK 465 HIS B 546 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 8 OG1 CG2 REMARK 470 GLN A 10 CG CD OE1 NE2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 HIS A 21 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 22 CG OD1 OD2 REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 LYS A 164 CD CE NZ REMARK 470 LYS A 240 CE NZ REMARK 470 LYS A 262 CD CE NZ REMARK 470 LYS A 291 CD CE NZ REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 GLU A 400 CD OE1 OE2 REMARK 470 LYS A 427 CG CD CE NZ REMARK 470 GLN A 430 CD OE1 NE2 REMARK 470 LYS A 453 CG CD CE NZ REMARK 470 GLU A 471 CG CD OE1 OE2 REMARK 470 LYS A 492 CD CE NZ REMARK 470 GLN A 505 CD OE1 NE2 REMARK 470 LYS A 539 CE NZ REMARK 470 HIS A 541 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 10 CG CD OE1 NE2 REMARK 470 ASP B 19 CG OD1 OD2 REMARK 470 ARG B 46 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 91 CG CD CE NZ REMARK 470 GLU B 158 CG CD OE1 OE2 REMARK 470 LYS B 164 CD CE NZ REMARK 470 LYS B 181 CG CD CE NZ REMARK 470 GLU B 239 CG CD OE1 OE2 REMARK 470 LYS B 240 CD CE NZ REMARK 470 LYS B 262 CD CE NZ REMARK 470 GLU B 295 CG CD OE1 OE2 REMARK 470 GLU B 317 CG CD OE1 OE2 REMARK 470 LYS B 427 CG CD CE NZ REMARK 470 LYS B 448 CG CD CE NZ REMARK 470 LYS B 453 CG CD CE NZ REMARK 470 LYS B 492 CG CD CE NZ REMARK 470 ILE B 493 CG1 CG2 CD1 REMARK 470 SER B 502 OG REMARK 470 GLU B 504 CG CD OE1 OE2 REMARK 470 GLN B 505 CG CD OE1 NE2 REMARK 470 GLN B 507 CG CD OE1 NE2 REMARK 470 GLU B 508 CG CD OE1 OE2 REMARK 470 LYS B 509 CG CD CE NZ REMARK 470 GLU B 511 CD OE1 OE2 REMARK 470 LYS B 515 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR B 81 HH TYR B 221 1.13 REMARK 500 HD22 ASN B 469 O HOH B 702 1.54 REMARK 500 HG1 THR B 255 OD1 ASP B 268 1.54 REMARK 500 O HOH A 1053 O HOH A 1146 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 21 -95.70 -66.36 REMARK 500 ASP A 260 119.95 -29.35 REMARK 500 ASP A 269 -32.48 -153.22 REMARK 500 ASP A 274 -168.29 -118.12 REMARK 500 ASP A 307 -18.06 98.67 REMARK 500 THR A 329 155.38 178.18 REMARK 500 ASN A 331 40.94 -89.62 REMARK 500 THR A 388 -151.70 -170.67 REMARK 500 MET A 477 -62.99 78.47 REMARK 500 HIS B 21 -109.44 -78.80 REMARK 500 ASN B 26 63.35 32.39 REMARK 500 SER B 66 72.43 -118.62 REMARK 500 ARG B 198 62.77 61.13 REMARK 500 ASP B 269 -32.42 -151.13 REMARK 500 ASP B 274 -165.82 -115.63 REMARK 500 ASP B 307 -11.25 96.59 REMARK 500 ASN B 331 38.59 -93.74 REMARK 500 THR B 388 -151.99 -171.05 REMARK 500 MET B 477 -64.30 77.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1152 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A1153 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A1154 DISTANCE = 7.52 ANGSTROMS REMARK 525 HOH B1140 DISTANCE = 6.98 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OAA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THJ A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THJ B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THJ B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THJ B 603 DBREF 6AT3 A 1 540 UNP P22259 PCKA_ECOLI 1 540 DBREF 6AT3 B 1 540 UNP P22259 PCKA_ECOLI 1 540 SEQADV 6AT3 PHE A 207 UNP P22259 TYR 207 ENGINEERED MUTATION SEQADV 6AT3 HIS A 541 UNP P22259 EXPRESSION TAG SEQADV 6AT3 HIS A 542 UNP P22259 EXPRESSION TAG SEQADV 6AT3 HIS A 543 UNP P22259 EXPRESSION TAG SEQADV 6AT3 HIS A 544 UNP P22259 EXPRESSION TAG SEQADV 6AT3 HIS A 545 UNP P22259 EXPRESSION TAG SEQADV 6AT3 HIS A 546 UNP P22259 EXPRESSION TAG SEQADV 6AT3 PHE B 207 UNP P22259 TYR 207 ENGINEERED MUTATION SEQADV 6AT3 HIS B 541 UNP P22259 EXPRESSION TAG SEQADV 6AT3 HIS B 542 UNP P22259 EXPRESSION TAG SEQADV 6AT3 HIS B 543 UNP P22259 EXPRESSION TAG SEQADV 6AT3 HIS B 544 UNP P22259 EXPRESSION TAG SEQADV 6AT3 HIS B 545 UNP P22259 EXPRESSION TAG SEQADV 6AT3 HIS B 546 UNP P22259 EXPRESSION TAG SEQRES 1 A 546 MET ARG VAL ASN ASN GLY LEU THR PRO GLN GLU LEU GLU SEQRES 2 A 546 ALA TYR GLY ILE SER ASP VAL HIS ASP ILE VAL TYR ASN SEQRES 3 A 546 PRO SER TYR ASP LEU LEU TYR GLN GLU GLU LEU ASP PRO SEQRES 4 A 546 SER LEU THR GLY TYR GLU ARG GLY VAL LEU THR ASN LEU SEQRES 5 A 546 GLY ALA VAL ALA VAL ASP THR GLY ILE PHE THR GLY ARG SEQRES 6 A 546 SER PRO LYS ASP LYS TYR ILE VAL ARG ASP ASP THR THR SEQRES 7 A 546 ARG ASP THR PHE TRP TRP ALA ASP LYS GLY LYS GLY LYS SEQRES 8 A 546 ASN ASP ASN LYS PRO LEU SER PRO GLU THR TRP GLN HIS SEQRES 9 A 546 LEU LYS GLY LEU VAL THR ARG GLN LEU SER GLY LYS ARG SEQRES 10 A 546 LEU PHE VAL VAL ASP ALA PHE CYS GLY ALA ASN PRO ASP SEQRES 11 A 546 THR ARG LEU SER VAL ARG PHE ILE THR GLU VAL ALA TRP SEQRES 12 A 546 GLN ALA HIS PHE VAL LYS ASN MET PHE ILE ARG PRO SER SEQRES 13 A 546 ASP GLU GLU LEU ALA GLY PHE LYS PRO ASP PHE ILE VAL SEQRES 14 A 546 MET ASN GLY ALA LYS CYS THR ASN PRO GLN TRP LYS GLU SEQRES 15 A 546 GLN GLY LEU ASN SER GLU ASN PHE VAL ALA PHE ASN LEU SEQRES 16 A 546 THR GLU ARG MET GLN LEU ILE GLY GLY THR TRP PHE GLY SEQRES 17 A 546 GLY GLU MET LYS LYS GLY MET PHE SER MET MET ASN TYR SEQRES 18 A 546 LEU LEU PRO LEU LYS GLY ILE ALA SER MET HIS CYS SER SEQRES 19 A 546 ALA ASN VAL GLY GLU LYS GLY ASP VAL ALA VAL PHE PHE SEQRES 20 A 546 GLY LEU SER GLY THR GLY LYS THR THR LEU SER THR ASP SEQRES 21 A 546 PRO LYS ARG ARG LEU ILE GLY ASP ASP GLU HIS GLY TRP SEQRES 22 A 546 ASP ASP ASP GLY VAL PHE ASN PHE GLU GLY GLY CYS TYR SEQRES 23 A 546 ALA LYS THR ILE LYS LEU SER LYS GLU ALA GLU PRO GLU SEQRES 24 A 546 ILE TYR ASN ALA ILE ARG ARG ASP ALA LEU LEU GLU ASN SEQRES 25 A 546 VAL THR VAL ARG GLU ASP GLY THR ILE ASP PHE ASP ASP SEQRES 26 A 546 GLY SER LYS THR GLU ASN THR ARG VAL SER TYR PRO ILE SEQRES 27 A 546 TYR HIS ILE ASP ASN ILE VAL LYS PRO VAL SER LYS ALA SEQRES 28 A 546 GLY HIS ALA THR LYS VAL ILE PHE LEU THR ALA ASP ALA SEQRES 29 A 546 PHE GLY VAL LEU PRO PRO VAL SER ARG LEU THR ALA ASP SEQRES 30 A 546 GLN THR GLN TYR HIS PHE LEU SER GLY PHE THR ALA LYS SEQRES 31 A 546 LEU ALA GLY THR GLU ARG GLY ILE THR GLU PRO THR PRO SEQRES 32 A 546 THR PHE SER ALA CYS PHE GLY ALA ALA PHE LEU SER LEU SEQRES 33 A 546 HIS PRO THR GLN TYR ALA GLU VAL LEU VAL LYS ARG MET SEQRES 34 A 546 GLN ALA ALA GLY ALA GLN ALA TYR LEU VAL ASN THR GLY SEQRES 35 A 546 TRP ASN GLY THR GLY LYS ARG ILE SER ILE LYS ASP THR SEQRES 36 A 546 ARG ALA ILE ILE ASP ALA ILE LEU ASN GLY SER LEU ASP SEQRES 37 A 546 ASN ALA GLU THR PHE THR LEU PRO MET PHE ASN LEU ALA SEQRES 38 A 546 ILE PRO THR GLU LEU PRO GLY VAL ASP THR LYS ILE LEU SEQRES 39 A 546 ASP PRO ARG ASN THR TYR ALA SER PRO GLU GLN TRP GLN SEQRES 40 A 546 GLU LYS ALA GLU THR LEU ALA LYS LEU PHE ILE ASP ASN SEQRES 41 A 546 PHE ASP LYS TYR THR ASP THR PRO ALA GLY ALA ALA LEU SEQRES 42 A 546 VAL ALA ALA GLY PRO LYS LEU HIS HIS HIS HIS HIS HIS SEQRES 1 B 546 MET ARG VAL ASN ASN GLY LEU THR PRO GLN GLU LEU GLU SEQRES 2 B 546 ALA TYR GLY ILE SER ASP VAL HIS ASP ILE VAL TYR ASN SEQRES 3 B 546 PRO SER TYR ASP LEU LEU TYR GLN GLU GLU LEU ASP PRO SEQRES 4 B 546 SER LEU THR GLY TYR GLU ARG GLY VAL LEU THR ASN LEU SEQRES 5 B 546 GLY ALA VAL ALA VAL ASP THR GLY ILE PHE THR GLY ARG SEQRES 6 B 546 SER PRO LYS ASP LYS TYR ILE VAL ARG ASP ASP THR THR SEQRES 7 B 546 ARG ASP THR PHE TRP TRP ALA ASP LYS GLY LYS GLY LYS SEQRES 8 B 546 ASN ASP ASN LYS PRO LEU SER PRO GLU THR TRP GLN HIS SEQRES 9 B 546 LEU LYS GLY LEU VAL THR ARG GLN LEU SER GLY LYS ARG SEQRES 10 B 546 LEU PHE VAL VAL ASP ALA PHE CYS GLY ALA ASN PRO ASP SEQRES 11 B 546 THR ARG LEU SER VAL ARG PHE ILE THR GLU VAL ALA TRP SEQRES 12 B 546 GLN ALA HIS PHE VAL LYS ASN MET PHE ILE ARG PRO SER SEQRES 13 B 546 ASP GLU GLU LEU ALA GLY PHE LYS PRO ASP PHE ILE VAL SEQRES 14 B 546 MET ASN GLY ALA LYS CYS THR ASN PRO GLN TRP LYS GLU SEQRES 15 B 546 GLN GLY LEU ASN SER GLU ASN PHE VAL ALA PHE ASN LEU SEQRES 16 B 546 THR GLU ARG MET GLN LEU ILE GLY GLY THR TRP PHE GLY SEQRES 17 B 546 GLY GLU MET LYS LYS GLY MET PHE SER MET MET ASN TYR SEQRES 18 B 546 LEU LEU PRO LEU LYS GLY ILE ALA SER MET HIS CYS SER SEQRES 19 B 546 ALA ASN VAL GLY GLU LYS GLY ASP VAL ALA VAL PHE PHE SEQRES 20 B 546 GLY LEU SER GLY THR GLY LYS THR THR LEU SER THR ASP SEQRES 21 B 546 PRO LYS ARG ARG LEU ILE GLY ASP ASP GLU HIS GLY TRP SEQRES 22 B 546 ASP ASP ASP GLY VAL PHE ASN PHE GLU GLY GLY CYS TYR SEQRES 23 B 546 ALA LYS THR ILE LYS LEU SER LYS GLU ALA GLU PRO GLU SEQRES 24 B 546 ILE TYR ASN ALA ILE ARG ARG ASP ALA LEU LEU GLU ASN SEQRES 25 B 546 VAL THR VAL ARG GLU ASP GLY THR ILE ASP PHE ASP ASP SEQRES 26 B 546 GLY SER LYS THR GLU ASN THR ARG VAL SER TYR PRO ILE SEQRES 27 B 546 TYR HIS ILE ASP ASN ILE VAL LYS PRO VAL SER LYS ALA SEQRES 28 B 546 GLY HIS ALA THR LYS VAL ILE PHE LEU THR ALA ASP ALA SEQRES 29 B 546 PHE GLY VAL LEU PRO PRO VAL SER ARG LEU THR ALA ASP SEQRES 30 B 546 GLN THR GLN TYR HIS PHE LEU SER GLY PHE THR ALA LYS SEQRES 31 B 546 LEU ALA GLY THR GLU ARG GLY ILE THR GLU PRO THR PRO SEQRES 32 B 546 THR PHE SER ALA CYS PHE GLY ALA ALA PHE LEU SER LEU SEQRES 33 B 546 HIS PRO THR GLN TYR ALA GLU VAL LEU VAL LYS ARG MET SEQRES 34 B 546 GLN ALA ALA GLY ALA GLN ALA TYR LEU VAL ASN THR GLY SEQRES 35 B 546 TRP ASN GLY THR GLY LYS ARG ILE SER ILE LYS ASP THR SEQRES 36 B 546 ARG ALA ILE ILE ASP ALA ILE LEU ASN GLY SER LEU ASP SEQRES 37 B 546 ASN ALA GLU THR PHE THR LEU PRO MET PHE ASN LEU ALA SEQRES 38 B 546 ILE PRO THR GLU LEU PRO GLY VAL ASP THR LYS ILE LEU SEQRES 39 B 546 ASP PRO ARG ASN THR TYR ALA SER PRO GLU GLN TRP GLN SEQRES 40 B 546 GLU LYS ALA GLU THR LEU ALA LYS LEU PHE ILE ASP ASN SEQRES 41 B 546 PHE ASP LYS TYR THR ASP THR PRO ALA GLY ALA ALA LEU SEQRES 42 B 546 VAL ALA ALA GLY PRO LYS LEU HIS HIS HIS HIS HIS HIS HET OAA A 601 11 HET THJ A 602 5 HET THJ B 601 5 HET THJ B 602 5 HET THJ B 603 5 HETNAM OAA OXALOACETATE ION HETNAM THJ THIOSULFATE FORMUL 3 OAA C4 H3 O5 1- FORMUL 4 THJ 4(O3 S2 2-) FORMUL 8 HOH *894(H2 O) HELIX 1 AA1 THR A 8 ALA A 14 1 7 HELIX 2 AA2 SER A 28 LEU A 37 1 10 HELIX 3 AA3 THR A 42 ARG A 46 5 5 HELIX 4 AA4 SER A 66 LYS A 68 5 3 HELIX 5 AA5 SER A 98 LEU A 113 1 16 HELIX 6 AA6 VAL A 141 PHE A 152 1 12 HELIX 7 AA7 SER A 156 GLY A 162 1 7 HELIX 8 AA8 GLY A 209 LYS A 226 1 18 HELIX 9 AA9 GLY A 253 THR A 259 1 7 HELIX 10 AB1 GLU A 297 ALA A 303 1 7 HELIX 11 AB2 TYR A 339 ILE A 341 5 3 HELIX 12 AB3 THR A 375 GLY A 386 1 12 HELIX 13 AB4 ALA A 407 LEU A 414 5 8 HELIX 14 AB5 HIS A 417 GLY A 433 1 17 HELIX 15 AB6 SER A 451 ASN A 464 1 14 HELIX 16 AB7 ASP A 490 TYR A 500 5 11 HELIX 17 AB8 SER A 502 ASP A 522 1 21 HELIX 18 AB9 LYS A 523 THR A 525 5 3 HELIX 19 AC1 THR A 527 LEU A 533 1 7 HELIX 20 AC2 VAL A 534 GLY A 537 5 4 HELIX 21 AC3 THR B 8 ALA B 14 1 7 HELIX 22 AC4 SER B 28 LEU B 37 1 10 HELIX 23 AC5 THR B 42 ARG B 46 5 5 HELIX 24 AC6 SER B 66 LYS B 68 5 3 HELIX 25 AC7 SER B 98 LEU B 113 1 16 HELIX 26 AC8 VAL B 141 PHE B 152 1 12 HELIX 27 AC9 SER B 156 GLY B 162 1 7 HELIX 28 AD1 GLY B 209 LYS B 226 1 18 HELIX 29 AD2 GLY B 253 SER B 258 1 6 HELIX 30 AD3 GLU B 297 ILE B 304 1 8 HELIX 31 AD4 TYR B 339 ILE B 341 5 3 HELIX 32 AD5 THR B 375 GLY B 386 1 12 HELIX 33 AD6 ALA B 407 LEU B 414 5 8 HELIX 34 AD7 HIS B 417 GLY B 433 1 17 HELIX 35 AD8 SER B 451 ASN B 464 1 14 HELIX 36 AD9 ASP B 490 TYR B 500 5 11 HELIX 37 AE1 SER B 502 ASP B 522 1 21 HELIX 38 AE2 LYS B 523 THR B 525 5 3 HELIX 39 AE3 THR B 527 VAL B 534 1 8 HELIX 40 AE4 ALA B 535 GLY B 537 5 3 SHEET 1 AA1 8 ILE A 23 TYR A 25 0 SHEET 2 AA1 8 LEU A 118 CYS A 125 1 O LEU A 118 N VAL A 24 SHEET 3 AA1 8 LEU A 133 THR A 139 -1 O VAL A 135 N ALA A 123 SHEET 4 AA1 8 PHE A 167 GLY A 172 1 O ASN A 171 N ILE A 138 SHEET 5 AA1 8 MET A 199 GLY A 203 1 O ILE A 202 N GLY A 172 SHEET 6 AA1 8 PHE A 190 ASN A 194 -1 N PHE A 190 O GLY A 203 SHEET 7 AA1 8 LYS A 70 VAL A 73 1 N VAL A 73 O PHE A 193 SHEET 8 AA1 8 LYS A 95 LEU A 97 1 O LYS A 95 N ILE A 72 SHEET 1 AA2 5 VAL A 48 LEU A 49 0 SHEET 2 AA2 5 VAL A 55 VAL A 57 -1 O ALA A 56 N VAL A 48 SHEET 3 AA2 5 LEU A 309 GLU A 311 1 O LEU A 310 N VAL A 55 SHEET 4 AA2 5 ARG A 333 PRO A 337 -1 O ARG A 333 N GLU A 311 SHEET 5 AA2 5 GLY A 284 LYS A 288 -1 N CYS A 285 O TYR A 336 SHEET 1 AA3 5 ARG A 264 GLY A 267 0 SHEET 2 AA3 5 ALA A 229 VAL A 237 -1 N ALA A 235 O ILE A 266 SHEET 3 AA3 5 GLU A 270 TRP A 273 -1 O HIS A 271 N MET A 231 SHEET 4 AA3 5 VAL A 278 ASN A 280 -1 O PHE A 279 N GLY A 272 SHEET 5 AA3 5 LYS A 350 ALA A 351 -1 O ALA A 351 N VAL A 278 SHEET 1 AA4 6 ARG A 264 GLY A 267 0 SHEET 2 AA4 6 ALA A 229 VAL A 237 -1 N ALA A 235 O ILE A 266 SHEET 3 AA4 6 VAL A 243 PHE A 247 -1 O PHE A 246 N SER A 234 SHEET 4 AA4 6 ALA A 354 THR A 361 1 O ILE A 358 N PHE A 247 SHEET 5 AA4 6 GLN A 435 ASN A 440 1 O TYR A 437 N PHE A 359 SHEET 6 AA4 6 VAL A 371 ARG A 373 -1 N SER A 372 O LEU A 438 SHEET 1 AA5 2 THR A 314 VAL A 315 0 SHEET 2 AA5 2 ILE A 321 ASP A 322 -1 O ASP A 322 N THR A 314 SHEET 1 AA6 2 PHE A 387 LYS A 390 0 SHEET 2 AA6 2 THR A 402 PHE A 405 -1 O THR A 402 N LYS A 390 SHEET 1 AA7 2 THR A 472 LEU A 475 0 SHEET 2 AA7 2 LEU A 480 PRO A 483 -1 O ILE A 482 N PHE A 473 SHEET 1 AA8 8 ILE B 23 TYR B 25 0 SHEET 2 AA8 8 LEU B 118 CYS B 125 1 O LEU B 118 N VAL B 24 SHEET 3 AA8 8 LEU B 133 THR B 139 -1 O THR B 139 N PHE B 119 SHEET 4 AA8 8 PHE B 167 GLY B 172 1 O VAL B 169 N ARG B 136 SHEET 5 AA8 8 MET B 199 GLY B 203 1 O GLN B 200 N ILE B 168 SHEET 6 AA8 8 PHE B 190 ASN B 194 -1 N PHE B 190 O GLY B 203 SHEET 7 AA8 8 LYS B 70 VAL B 73 1 N VAL B 73 O PHE B 193 SHEET 8 AA8 8 LYS B 95 LEU B 97 1 O LYS B 95 N ILE B 72 SHEET 1 AA9 5 VAL B 48 LEU B 49 0 SHEET 2 AA9 5 VAL B 55 VAL B 57 -1 O ALA B 56 N VAL B 48 SHEET 3 AA9 5 LEU B 309 GLU B 311 1 O LEU B 310 N VAL B 55 SHEET 4 AA9 5 ARG B 333 PRO B 337 -1 O ARG B 333 N GLU B 311 SHEET 5 AA9 5 GLY B 284 LYS B 288 -1 N CYS B 285 O TYR B 336 SHEET 1 AB1 4 ARG B 263 GLY B 267 0 SHEET 2 AB1 4 ALA B 229 GLY B 238 -1 N VAL B 237 O ARG B 264 SHEET 3 AB1 4 GLU B 270 ASP B 274 -1 O HIS B 271 N MET B 231 SHEET 4 AB1 4 GLY B 277 ASN B 280 -1 O PHE B 279 N GLY B 272 SHEET 1 AB2 6 ARG B 263 GLY B 267 0 SHEET 2 AB2 6 ALA B 229 GLY B 238 -1 N VAL B 237 O ARG B 264 SHEET 3 AB2 6 VAL B 243 PHE B 247 -1 O ALA B 244 N ASN B 236 SHEET 4 AB2 6 ALA B 354 THR B 361 1 O ILE B 358 N VAL B 245 SHEET 5 AB2 6 GLN B 435 ASN B 440 1 O TYR B 437 N PHE B 359 SHEET 6 AB2 6 VAL B 371 ARG B 373 -1 N SER B 372 O LEU B 438 SHEET 1 AB3 2 THR B 314 VAL B 315 0 SHEET 2 AB3 2 ILE B 321 ASP B 322 -1 O ASP B 322 N THR B 314 SHEET 1 AB4 2 PHE B 387 LYS B 390 0 SHEET 2 AB4 2 THR B 402 PHE B 405 -1 O THR B 402 N LYS B 390 SHEET 1 AB5 2 THR B 472 LEU B 475 0 SHEET 2 AB5 2 LEU B 480 PRO B 483 -1 O ILE B 482 N PHE B 473 CISPEP 1 LYS A 346 PRO A 347 0 7.65 CISPEP 2 LYS B 346 PRO B 347 0 6.44 SITE 1 AC1 6 ARG A 65 PHE A 207 LYS A 213 HIS A 232 SITE 2 AC1 6 SER A 250 ARG A 333 SITE 1 AC2 8 GLY A 251 THR A 252 GLY A 253 LYS A 254 SITE 2 AC2 8 THR A 255 THR A 256 HOH A 908 HOH A 931 SITE 1 AC3 6 LYS A 346 PRO A 347 ARG B 74 ARG B 79 SITE 2 AC3 6 HOH B 852 HOH B 863 SITE 1 AC4 9 ARG B 65 LYS B 213 HIS B 232 LEU B 249 SITE 2 AC4 9 SER B 250 ASP B 269 ARG B 333 PHE B 413 SITE 3 AC4 9 HOH B 942 SITE 1 AC5 8 SER B 250 GLY B 251 THR B 252 GLY B 253 SITE 2 AC5 8 LYS B 254 THR B 255 THR B 256 HOH B 995 CRYST1 94.670 105.857 120.487 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010563 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008300 0.00000