HEADER IMMUNE SYSTEM 27-AUG-17 6AT5 TITLE CRYSTAL STRUCTURE OF HLA-B*07:02 IN COMPLEX WITH AN NY-ESO-1 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-7 ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MHC CLASS I ANTIGEN B*7; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: CANCER/TESTIS ANTIGEN 1 PEPTIDE; COMPND 12 CHAIN: C; COMPND 13 SYNONYM: AUTOIMMUNOGENIC CANCER/TESTIS ANTIGEN NY-ESO-1,CANCER/TESTIS COMPND 14 ANTIGEN 6.1,CT6.1,L ANTIGEN FAMILY MEMBER 2,LAGE-2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-B, HLAB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606 KEYWDS HUMAN LEUKOCYTE ANTIGEN, MAJOR HISTOCOMPATIBILITY COMPLEX, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.S.GULLY,J.ROSSJOHN REVDAT 3 09-OCT-24 6AT5 1 REMARK REVDAT 2 04-APR-18 6AT5 1 JRNL REVDAT 1 28-FEB-18 6AT5 0 JRNL AUTH K.F.CHAN,B.S.GULLY,S.GRAS,D.X.BERINGER,L.KJER-NIELSEN, JRNL AUTH 2 J.CEBON,J.MCCLUSKEY,W.CHEN,J.ROSSJOHN JRNL TITL DIVERGENT T-CELL RECEPTOR RECOGNITION MODES OF A HLA-I JRNL TITL 2 RESTRICTED EXTENDED TUMOUR-ASSOCIATED PEPTIDE. JRNL REF NAT COMMUN V. 9 1026 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29531227 JRNL DOI 10.1038/S41467-018-03321-W REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 74259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.1514 - 4.4941 0.93 2621 159 0.1869 0.2143 REMARK 3 2 4.4941 - 3.5694 0.99 2687 141 0.1708 0.1702 REMARK 3 3 3.5694 - 3.1189 1.00 2694 137 0.1713 0.1790 REMARK 3 4 3.1189 - 2.8340 1.00 2671 130 0.1831 0.2031 REMARK 3 5 2.8340 - 2.6310 1.00 2676 139 0.1927 0.2056 REMARK 3 6 2.6310 - 2.4760 1.00 2642 145 0.1989 0.2449 REMARK 3 7 2.4760 - 2.3521 1.00 2634 137 0.2158 0.2663 REMARK 3 8 2.3521 - 2.2497 0.99 2630 137 0.2360 0.2611 REMARK 3 9 2.2497 - 2.1632 0.96 2521 128 0.2894 0.3222 REMARK 3 10 2.1632 - 2.0885 1.00 2628 120 0.1953 0.2143 REMARK 3 11 2.0885 - 2.0233 1.00 2635 158 0.1860 0.2136 REMARK 3 12 2.0233 - 1.9654 1.00 2600 152 0.2078 0.2279 REMARK 3 13 1.9654 - 1.9137 0.95 2478 127 0.3021 0.2801 REMARK 3 14 1.9137 - 1.8670 0.97 2561 120 0.3357 0.3312 REMARK 3 15 1.8670 - 1.8246 1.00 2579 149 0.2566 0.2799 REMARK 3 16 1.8246 - 1.7858 1.00 2624 125 0.2333 0.2735 REMARK 3 17 1.7858 - 1.7500 1.00 2629 124 0.2312 0.2422 REMARK 3 18 1.7500 - 1.7170 1.00 2619 126 0.2281 0.2482 REMARK 3 19 1.7170 - 1.6864 1.00 2615 138 0.1976 0.2409 REMARK 3 20 1.6864 - 1.6578 1.00 2611 128 0.1996 0.2194 REMARK 3 21 1.6578 - 1.6310 1.00 2594 151 0.2001 0.2364 REMARK 3 22 1.6310 - 1.6060 1.00 2587 149 0.1990 0.2315 REMARK 3 23 1.6060 - 1.5823 1.00 2632 122 0.2029 0.2567 REMARK 3 24 1.5823 - 1.5601 1.00 2552 163 0.2063 0.2281 REMARK 3 25 1.5601 - 1.5390 1.00 2598 148 0.2166 0.2556 REMARK 3 26 1.5390 - 1.5190 1.00 2557 142 0.2587 0.3169 REMARK 3 27 1.5190 - 1.5000 1.00 2647 142 0.2688 0.3364 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3285 REMARK 3 ANGLE : 0.952 4458 REMARK 3 CHIRALITY : 0.037 446 REMARK 3 PLANARITY : 0.004 596 REMARK 3 DIHEDRAL : 13.893 1225 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AT5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229785. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74669 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 46.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.56400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL AND 20 % PEG 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.09700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.02350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.03300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.02350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.09700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.03300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 LEU A -22 REMARK 465 VAL A -21 REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 PRO A -18 REMARK 465 ARG A -17 REMARK 465 THR A -16 REMARK 465 VAL A -15 REMARK 465 LEU A -14 REMARK 465 LEU A -13 REMARK 465 LEU A -12 REMARK 465 LEU A -11 REMARK 465 SER A -10 REMARK 465 ALA A -9 REMARK 465 ALA A -8 REMARK 465 LEU A -7 REMARK 465 ALA A -6 REMARK 465 LEU A -5 REMARK 465 THR A -4 REMARK 465 GLU A -3 REMARK 465 THR A -2 REMARK 465 TRP A -1 REMARK 465 ALA A 0 REMARK 465 PRO A 276 REMARK 465 SER A 277 REMARK 465 SER A 278 REMARK 465 GLN A 279 REMARK 465 SER A 280 REMARK 465 THR A 281 REMARK 465 VAL A 282 REMARK 465 PRO A 283 REMARK 465 ILE A 284 REMARK 465 VAL A 285 REMARK 465 GLY A 286 REMARK 465 ILE A 287 REMARK 465 VAL A 288 REMARK 465 ALA A 289 REMARK 465 GLY A 290 REMARK 465 LEU A 291 REMARK 465 ALA A 292 REMARK 465 VAL A 293 REMARK 465 LEU A 294 REMARK 465 ALA A 295 REMARK 465 VAL A 296 REMARK 465 VAL A 297 REMARK 465 VAL A 298 REMARK 465 ILE A 299 REMARK 465 GLY A 300 REMARK 465 ALA A 301 REMARK 465 VAL A 302 REMARK 465 VAL A 303 REMARK 465 ALA A 304 REMARK 465 ALA A 305 REMARK 465 VAL A 306 REMARK 465 MET A 307 REMARK 465 CYS A 308 REMARK 465 ARG A 309 REMARK 465 ARG A 310 REMARK 465 LYS A 311 REMARK 465 SER A 312 REMARK 465 SER A 313 REMARK 465 GLY A 314 REMARK 465 GLY A 315 REMARK 465 LYS A 316 REMARK 465 GLY A 317 REMARK 465 GLY A 318 REMARK 465 SER A 319 REMARK 465 TYR A 320 REMARK 465 SER A 321 REMARK 465 GLN A 322 REMARK 465 ALA A 323 REMARK 465 ALA A 324 REMARK 465 CYS A 325 REMARK 465 SER A 326 REMARK 465 ASP A 327 REMARK 465 SER A 328 REMARK 465 ALA A 329 REMARK 465 GLN A 330 REMARK 465 GLY A 331 REMARK 465 SER A 332 REMARK 465 ASP A 333 REMARK 465 VAL A 334 REMARK 465 SER A 335 REMARK 465 LEU A 336 REMARK 465 THR A 337 REMARK 465 ALA A 338 REMARK 465 MET B -19 REMARK 465 SER B -18 REMARK 465 ARG B -17 REMARK 465 SER B -16 REMARK 465 VAL B -15 REMARK 465 ALA B -14 REMARK 465 LEU B -13 REMARK 465 ALA B -12 REMARK 465 VAL B -11 REMARK 465 LEU B -10 REMARK 465 ALA B -9 REMARK 465 LEU B -8 REMARK 465 LEU B -7 REMARK 465 SER B -6 REMARK 465 LEU B -5 REMARK 465 SER B -4 REMARK 465 GLY B -3 REMARK 465 LEU B -2 REMARK 465 GLU B -1 REMARK 465 ALA B 0 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS B 48 CE NZ REMARK 480 GLN B 89 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 953 O HOH A 959 1.81 REMARK 500 O HOH A 409 O HOH A 580 1.86 REMARK 500 O HOH A 907 O HOH A 963 1.86 REMARK 500 O HOH A 615 O HOH B 246 1.86 REMARK 500 O HOH A 559 O HOH B 231 1.87 REMARK 500 O HOH A 783 O HOH A 913 1.87 REMARK 500 O HOH A 881 O HOH A 892 1.91 REMARK 500 O HOH A 917 O HOH A 992 1.91 REMARK 500 O HOH A 833 O HOH A 878 1.92 REMARK 500 O HOH A 791 O HOH A 862 1.93 REMARK 500 O HOH A 776 O HOH A 893 1.94 REMARK 500 O HOH A 478 O HOH A 705 1.94 REMARK 500 O HOH A 743 O HOH A 877 1.96 REMARK 500 O HOH A 838 O HOH C 105 1.97 REMARK 500 O HOH A 817 O HOH A 995 1.98 REMARK 500 O HOH A 771 O HOH A 901 1.99 REMARK 500 O HOH A 406 O HOH A 761 1.99 REMARK 500 O HOH A 470 O HOH A 714 2.01 REMARK 500 O HOH A 859 O HOH A 1004 2.01 REMARK 500 O HOH B 229 O HOH B 313 2.01 REMARK 500 O HOH A 426 O HOH A 735 2.02 REMARK 500 OE1 GLU B 47 O HOH B 101 2.02 REMARK 500 O HOH A 576 O HOH A 599 2.03 REMARK 500 O HOH A 805 O HOH A 808 2.03 REMARK 500 O HOH A 437 O HOH A 823 2.04 REMARK 500 O HOH A 441 O HOH A 529 2.07 REMARK 500 O GLY C 4 O HOH C 101 2.07 REMARK 500 O HOH A 879 O HOH A 963 2.08 REMARK 500 O HOH B 119 O HOH B 137 2.08 REMARK 500 O HOH B 237 O HOH B 278 2.09 REMARK 500 O HOH B 118 O HOH B 238 2.09 REMARK 500 O HOH A 999 O HOH A 1012 2.10 REMARK 500 O HOH A 962 O HOH A 989 2.10 REMARK 500 OE2 GLU A 173 O HOH A 401 2.10 REMARK 500 O HOH B 114 O HOH B 226 2.10 REMARK 500 O HOH A 740 O HOH A 777 2.10 REMARK 500 OE2 GLU A 89 O HOH A 402 2.11 REMARK 500 OD2 ASP A 102 O HOH A 403 2.11 REMARK 500 O HOH C 107 O HOH C 108 2.11 REMARK 500 O HOH B 144 O HOH B 194 2.11 REMARK 500 NZ LYS B 19 O HOH B 102 2.12 REMARK 500 O HOH A 765 O HOH A 850 2.12 REMARK 500 O HOH A 819 O HOH B 254 2.13 REMARK 500 O HOH A 727 O HOH A 852 2.13 REMARK 500 O HOH A 465 O HOH B 132 2.13 REMARK 500 O HOH B 291 O HOH B 326 2.14 REMARK 500 O HOH A 769 O HOH A 780 2.15 REMARK 500 O HOH A 728 O HOH A 911 2.16 REMARK 500 O HOH B 197 O HOH B 229 2.16 REMARK 500 O ALA C 10 O HOH C 102 2.16 REMARK 500 REMARK 500 THIS ENTRY HAS 64 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 932 O HOH A 964 2454 2.02 REMARK 500 O HOH A 700 O HOH A 801 3554 2.04 REMARK 500 O HOH A 712 O HOH B 310 3454 2.08 REMARK 500 O HOH A 539 O HOH A 925 2455 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 14 67.44 -152.24 REMARK 500 ASP A 29 -126.37 50.91 REMARK 500 ASP A 114 98.22 -162.34 REMARK 500 ARG A 239 -24.77 87.20 REMARK 500 TRP B 60 -0.57 76.56 REMARK 500 HIS C 6 95.04 -61.15 REMARK 500 HIS C 6 97.62 -60.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1005 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1006 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A1007 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A1008 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A1009 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1010 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A1011 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A1012 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A1013 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A1014 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH A1015 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH A1016 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH A1017 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH A1018 DISTANCE = 7.87 ANGSTROMS REMARK 525 HOH A1019 DISTANCE = 8.10 ANGSTROMS REMARK 525 HOH A1020 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH A1021 DISTANCE = 8.70 ANGSTROMS REMARK 525 HOH B 330 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH B 331 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH B 332 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH B 333 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH B 334 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH B 335 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH B 336 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH B 337 DISTANCE = 11.40 ANGSTROMS REMARK 525 HOH C 122 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH C 123 DISTANCE = 7.38 ANGSTROMS REMARK 525 HOH C 124 DISTANCE = 8.38 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6AT6 RELATED DB: PDB REMARK 900 RELATED ID: 6AVF RELATED DB: PDB REMARK 900 RELATED ID: 6AVG RELATED DB: PDB DBREF 6AT5 A -23 338 UNP P01889 1B07_HUMAN 1 362 DBREF 6AT5 B -19 99 UNP P61769 B2MG_HUMAN 1 119 DBREF 6AT5 C 1 13 UNP P78358 CTG1B_HUMAN 60 72 SEQRES 1 A 362 MET LEU VAL MET ALA PRO ARG THR VAL LEU LEU LEU LEU SEQRES 2 A 362 SER ALA ALA LEU ALA LEU THR GLU THR TRP ALA GLY SER SEQRES 3 A 362 HIS SER MET ARG TYR PHE TYR THR SER VAL SER ARG PRO SEQRES 4 A 362 GLY ARG GLY GLU PRO ARG PHE ILE SER VAL GLY TYR VAL SEQRES 5 A 362 ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP ALA ALA SEQRES 6 A 362 SER PRO ARG GLU GLU PRO ARG ALA PRO TRP ILE GLU GLN SEQRES 7 A 362 GLU GLY PRO GLU TYR TRP ASP ARG ASN THR GLN ILE TYR SEQRES 8 A 362 LYS ALA GLN ALA GLN THR ASP ARG GLU SER LEU ARG ASN SEQRES 9 A 362 LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SER HIS SEQRES 10 A 362 THR LEU GLN SER MET TYR GLY CYS ASP VAL GLY PRO ASP SEQRES 11 A 362 GLY ARG LEU LEU ARG GLY HIS ASP GLN TYR ALA TYR ASP SEQRES 12 A 362 GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP LEU ARG SER SEQRES 13 A 362 TRP THR ALA ALA ASP THR ALA ALA GLN ILE THR GLN ARG SEQRES 14 A 362 LYS TRP GLU ALA ALA ARG GLU ALA GLU GLN ARG ARG ALA SEQRES 15 A 362 TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU ARG ARG TYR SEQRES 16 A 362 LEU GLU ASN GLY LYS ASP LYS LEU GLU ARG ALA ASP PRO SEQRES 17 A 362 PRO LYS THR HIS VAL THR HIS HIS PRO ILE SER ASP HIS SEQRES 18 A 362 GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE TYR PRO SEQRES 19 A 362 ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY GLU ASP SEQRES 20 A 362 GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG PRO ALA SEQRES 21 A 362 GLY ASP ARG THR PHE GLN LYS TRP ALA ALA VAL VAL VAL SEQRES 22 A 362 PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS VAL GLN SEQRES 23 A 362 HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG TRP GLU SEQRES 24 A 362 PRO SER SER GLN SER THR VAL PRO ILE VAL GLY ILE VAL SEQRES 25 A 362 ALA GLY LEU ALA VAL LEU ALA VAL VAL VAL ILE GLY ALA SEQRES 26 A 362 VAL VAL ALA ALA VAL MET CYS ARG ARG LYS SER SER GLY SEQRES 27 A 362 GLY LYS GLY GLY SER TYR SER GLN ALA ALA CYS SER ASP SEQRES 28 A 362 SER ALA GLN GLY SER ASP VAL SER LEU THR ALA SEQRES 1 B 119 MET SER ARG SER VAL ALA LEU ALA VAL LEU ALA LEU LEU SEQRES 2 B 119 SER LEU SER GLY LEU GLU ALA ILE GLN ARG THR PRO LYS SEQRES 3 B 119 ILE GLN VAL TYR SER ARG HIS PRO ALA GLU ASN GLY LYS SEQRES 4 B 119 SER ASN PHE LEU ASN CYS TYR VAL SER GLY PHE HIS PRO SEQRES 5 B 119 SER ASP ILE GLU VAL ASP LEU LEU LYS ASN GLY GLU ARG SEQRES 6 B 119 ILE GLU LYS VAL GLU HIS SER ASP LEU SER PHE SER LYS SEQRES 7 B 119 ASP TRP SER PHE TYR LEU LEU TYR TYR THR GLU PHE THR SEQRES 8 B 119 PRO THR GLU LYS ASP GLU TYR ALA CYS ARG VAL ASN HIS SEQRES 9 B 119 VAL THR LEU SER GLN PRO LYS ILE VAL LYS TRP ASP ARG SEQRES 10 B 119 ASP MET SEQRES 1 C 13 ALA PRO ARG GLY PRO HIS GLY GLY ALA ALA SER GLY LEU FORMUL 4 HOH *882(H2 O) HELIX 1 AA1 ALA A 49 GLU A 53 5 5 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 ALA A 150 1 14 HELIX 4 AA4 ARG A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLU A 180 1 6 HELIX 7 AA7 GLU A 253 GLN A 255 5 3 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N GLY A 26 O PHE A 33 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 THR A 94 VAL A 103 -1 O TYR A 99 N TYR A 7 SHEET 6 AA1 8 LEU A 109 TYR A 118 -1 O LEU A 110 N ASP A 102 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O TYR A 123 N TYR A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 SER A 195 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 SER A 195 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 ASP A 223 0 SHEET 2 AA4 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 ASN B 83 -1 O ALA B 79 N LEU B 40 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.05 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.03 CISPEP 1 TYR A 209 PRO A 210 0 -0.18 CISPEP 2 HIS B 31 PRO B 32 0 2.75 CISPEP 3 GLY C 7 GLY C 8 0 0.01 CRYST1 50.194 82.066 112.047 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019923 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012185 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008925 0.00000