HEADER TRANSFERASE 05-SEP-17 6AWI TITLE STAPHYLOCOCCUS AUREUS TYPE II PANTOTHENATE KINASE IN COMPLEX WITH ADP TITLE 2 AND PANTOTHENATE ANALOG DEOXY-N5PAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE II PANTOTHENATE KINASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PANK-II, PANTOTHENIC ACID KINASE; COMPND 5 EC: 2.7.1.33; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: COAW, AYM28_11860, AYM37_11860, ERS072738_01917, SOURCE 5 ERS074020_01878, HMPREF3211_02599; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STAPHYLOCOCCUS AUREUS, SAPANK, ADP, PANTOTHENATE ANALOG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHEN,T.ANTOSHCHENKO,E.STRAUSS,L.BARNARD,Y.H.HUANG REVDAT 2 13-MAR-24 6AWI 1 REMARK REVDAT 1 12-SEP-18 6AWI 0 JRNL AUTH Y.CHEN,T.ANTOSHCHENKO,E.STRAUSS,L.BARNARD,Y.H.HUANG JRNL TITL STRUCTURE-BASED IDENTIFICATION OF UNCOMPETITIVE INHIBITORS JRNL TITL 2 FOR STAPHYLOCOCCUS AUREUS PANTOTHENATE KINASE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 96433 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4985 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7108 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 351 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8155 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 184 REMARK 3 SOLVENT ATOMS : 550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.85000 REMARK 3 B22 (A**2) : -0.91000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.99000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.722 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8483 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 8128 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11512 ; 1.896 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18628 ; 1.008 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1059 ; 6.593 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 387 ;39.647 ;25.349 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1394 ;16.185 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;19.738 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1311 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9719 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1949 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6AWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000229907. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101733 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 132.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.460 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000, 0.2 M LITHIUM SULFATE, REMARK 280 0.1 M TRIS-HCL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.52100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU C 266 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 404 O HOH C 413 1.61 REMARK 500 O HOH C 401 O HOH C 504 1.71 REMARK 500 OE2 GLU A 27 O HOH A 401 1.92 REMARK 500 O HOH B 425 O HOH B 560 1.94 REMARK 500 O HOH B 470 O HOH B 535 2.01 REMARK 500 O HOH B 537 O HOH B 554 2.12 REMARK 500 O HOH A 488 O HOH B 563 2.16 REMARK 500 O ASN C 96 O HOH C 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN C 60 OE1 GLN D 21 2646 1.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 19 -149.57 56.75 REMARK 500 LYS A 161 -113.39 44.98 REMARK 500 PHE A 187 90.24 64.07 REMARK 500 GLN B 18 -99.49 -138.29 REMARK 500 ASN B 20 -1.76 60.50 REMARK 500 LYS B 161 94.23 -62.75 REMARK 500 ASP B 162 -5.78 73.62 REMARK 500 TYR C 92 151.21 174.65 REMARK 500 SER C 132 -14.62 -142.30 REMARK 500 LYS C 161 -108.36 65.28 REMARK 500 ALA C 185 145.70 -39.83 REMARK 500 PHE C 187 82.60 78.69 REMARK 500 ASP D 19 16.66 86.01 REMARK 500 ASN D 20 -24.42 70.87 REMARK 500 GLN D 43 103.54 -59.75 REMARK 500 ASN D 62 -72.01 -83.53 REMARK 500 ALA D 65 129.43 -171.35 REMARK 500 GLN D 109 -51.91 -122.05 REMARK 500 LYS D 161 76.52 30.16 REMARK 500 TYR D 264 30.70 -88.13 REMARK 500 LEU D 265 74.31 -105.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 517 DISTANCE = 6.59 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C0D A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C0D B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C0D C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C0D D 302 DBREF1 6AWI A 1 266 UNP A0A0D6HHM8_STAAU DBREF2 6AWI A A0A0D6HHM8 1 266 DBREF1 6AWI B 1 266 UNP A0A0D6HHM8_STAAU DBREF2 6AWI B A0A0D6HHM8 1 266 DBREF1 6AWI C 1 266 UNP A0A0D6HHM8_STAAU DBREF2 6AWI C A0A0D6HHM8 1 266 DBREF1 6AWI D 1 266 UNP A0A0D6HHM8_STAAU DBREF2 6AWI D A0A0D6HHM8 1 266 SEQRES 1 A 266 MET LYS VAL GLY ILE ASP ALA GLY GLY THR LEU ILE LYS SEQRES 2 A 266 ILE VAL GLN GLU GLN ASP ASN GLN ARG THR PHE LYS THR SEQRES 3 A 266 GLU LEU THR LYS ASN ILE ASP GLN VAL VAL GLU TRP LEU SEQRES 4 A 266 ASN GLN GLN GLN ILE GLU LYS LEU CYS LEU THR GLY GLY SEQRES 5 A 266 ASN ALA GLY VAL ILE ALA GLU ASN ILE ASN ILE PRO ALA SEQRES 6 A 266 GLN ILE PHE VAL GLU PHE ASP ALA ALA SER GLN GLY LEU SEQRES 7 A 266 GLY ILE LEU LEU LYS GLU GLN GLY HIS ASP LEU ALA ASP SEQRES 8 A 266 TYR ILE PHE ALA ASN VAL GLY THR GLY THR SER LEU HIS SEQRES 9 A 266 TYR PHE ASP GLY GLN SER GLN ARG ARG VAL GLY GLY ILE SEQRES 10 A 266 GLY THR GLY GLY GLY MET ILE GLN GLY LEU GLY TYR LEU SEQRES 11 A 266 LEU SER GLN ILE THR ASP TYR LYS GLN LEU THR ASP MET SEQRES 12 A 266 ALA GLN HIS GLY ASP ARG ASN THR ILE ASP LEU LYS VAL SEQRES 13 A 266 ARG HIS ILE TYR LYS ASP THR GLU PRO PRO ILE PRO GLY SEQRES 14 A 266 ASP LEU THR ALA ALA ASN PHE GLY HIS VAL LEU HIS HIS SEQRES 15 A 266 LEU ASP ALA ASP PHE THR PRO SER ASN LYS LEU ALA ALA SEQRES 16 A 266 VAL ILE GLY VAL VAL GLY GLU VAL VAL THR THR MET ALA SEQRES 17 A 266 ILE THR VAL ALA ARG GLU PHE LYS THR GLU ASN ILE VAL SEQRES 18 A 266 TYR ILE GLY SER SER PHE HIS ASN ASN ALA LEU LEU ARG SEQRES 19 A 266 LYS VAL VAL GLU ASP TYR THR VAL LEU ARG GLY CYS LYS SEQRES 20 A 266 PRO TYR TYR VAL GLU ASN GLY ALA PHE SER GLY ALA ILE SEQRES 21 A 266 GLY ALA LEU TYR LEU GLU SEQRES 1 B 266 MET LYS VAL GLY ILE ASP ALA GLY GLY THR LEU ILE LYS SEQRES 2 B 266 ILE VAL GLN GLU GLN ASP ASN GLN ARG THR PHE LYS THR SEQRES 3 B 266 GLU LEU THR LYS ASN ILE ASP GLN VAL VAL GLU TRP LEU SEQRES 4 B 266 ASN GLN GLN GLN ILE GLU LYS LEU CYS LEU THR GLY GLY SEQRES 5 B 266 ASN ALA GLY VAL ILE ALA GLU ASN ILE ASN ILE PRO ALA SEQRES 6 B 266 GLN ILE PHE VAL GLU PHE ASP ALA ALA SER GLN GLY LEU SEQRES 7 B 266 GLY ILE LEU LEU LYS GLU GLN GLY HIS ASP LEU ALA ASP SEQRES 8 B 266 TYR ILE PHE ALA ASN VAL GLY THR GLY THR SER LEU HIS SEQRES 9 B 266 TYR PHE ASP GLY GLN SER GLN ARG ARG VAL GLY GLY ILE SEQRES 10 B 266 GLY THR GLY GLY GLY MET ILE GLN GLY LEU GLY TYR LEU SEQRES 11 B 266 LEU SER GLN ILE THR ASP TYR LYS GLN LEU THR ASP MET SEQRES 12 B 266 ALA GLN HIS GLY ASP ARG ASN THR ILE ASP LEU LYS VAL SEQRES 13 B 266 ARG HIS ILE TYR LYS ASP THR GLU PRO PRO ILE PRO GLY SEQRES 14 B 266 ASP LEU THR ALA ALA ASN PHE GLY HIS VAL LEU HIS HIS SEQRES 15 B 266 LEU ASP ALA ASP PHE THR PRO SER ASN LYS LEU ALA ALA SEQRES 16 B 266 VAL ILE GLY VAL VAL GLY GLU VAL VAL THR THR MET ALA SEQRES 17 B 266 ILE THR VAL ALA ARG GLU PHE LYS THR GLU ASN ILE VAL SEQRES 18 B 266 TYR ILE GLY SER SER PHE HIS ASN ASN ALA LEU LEU ARG SEQRES 19 B 266 LYS VAL VAL GLU ASP TYR THR VAL LEU ARG GLY CYS LYS SEQRES 20 B 266 PRO TYR TYR VAL GLU ASN GLY ALA PHE SER GLY ALA ILE SEQRES 21 B 266 GLY ALA LEU TYR LEU GLU SEQRES 1 C 266 MET LYS VAL GLY ILE ASP ALA GLY GLY THR LEU ILE LYS SEQRES 2 C 266 ILE VAL GLN GLU GLN ASP ASN GLN ARG THR PHE LYS THR SEQRES 3 C 266 GLU LEU THR LYS ASN ILE ASP GLN VAL VAL GLU TRP LEU SEQRES 4 C 266 ASN GLN GLN GLN ILE GLU LYS LEU CYS LEU THR GLY GLY SEQRES 5 C 266 ASN ALA GLY VAL ILE ALA GLU ASN ILE ASN ILE PRO ALA SEQRES 6 C 266 GLN ILE PHE VAL GLU PHE ASP ALA ALA SER GLN GLY LEU SEQRES 7 C 266 GLY ILE LEU LEU LYS GLU GLN GLY HIS ASP LEU ALA ASP SEQRES 8 C 266 TYR ILE PHE ALA ASN VAL GLY THR GLY THR SER LEU HIS SEQRES 9 C 266 TYR PHE ASP GLY GLN SER GLN ARG ARG VAL GLY GLY ILE SEQRES 10 C 266 GLY THR GLY GLY GLY MET ILE GLN GLY LEU GLY TYR LEU SEQRES 11 C 266 LEU SER GLN ILE THR ASP TYR LYS GLN LEU THR ASP MET SEQRES 12 C 266 ALA GLN HIS GLY ASP ARG ASN THR ILE ASP LEU LYS VAL SEQRES 13 C 266 ARG HIS ILE TYR LYS ASP THR GLU PRO PRO ILE PRO GLY SEQRES 14 C 266 ASP LEU THR ALA ALA ASN PHE GLY HIS VAL LEU HIS HIS SEQRES 15 C 266 LEU ASP ALA ASP PHE THR PRO SER ASN LYS LEU ALA ALA SEQRES 16 C 266 VAL ILE GLY VAL VAL GLY GLU VAL VAL THR THR MET ALA SEQRES 17 C 266 ILE THR VAL ALA ARG GLU PHE LYS THR GLU ASN ILE VAL SEQRES 18 C 266 TYR ILE GLY SER SER PHE HIS ASN ASN ALA LEU LEU ARG SEQRES 19 C 266 LYS VAL VAL GLU ASP TYR THR VAL LEU ARG GLY CYS LYS SEQRES 20 C 266 PRO TYR TYR VAL GLU ASN GLY ALA PHE SER GLY ALA ILE SEQRES 21 C 266 GLY ALA LEU TYR LEU GLU SEQRES 1 D 266 MET LYS VAL GLY ILE ASP ALA GLY GLY THR LEU ILE LYS SEQRES 2 D 266 ILE VAL GLN GLU GLN ASP ASN GLN ARG THR PHE LYS THR SEQRES 3 D 266 GLU LEU THR LYS ASN ILE ASP GLN VAL VAL GLU TRP LEU SEQRES 4 D 266 ASN GLN GLN GLN ILE GLU LYS LEU CYS LEU THR GLY GLY SEQRES 5 D 266 ASN ALA GLY VAL ILE ALA GLU ASN ILE ASN ILE PRO ALA SEQRES 6 D 266 GLN ILE PHE VAL GLU PHE ASP ALA ALA SER GLN GLY LEU SEQRES 7 D 266 GLY ILE LEU LEU LYS GLU GLN GLY HIS ASP LEU ALA ASP SEQRES 8 D 266 TYR ILE PHE ALA ASN VAL GLY THR GLY THR SER LEU HIS SEQRES 9 D 266 TYR PHE ASP GLY GLN SER GLN ARG ARG VAL GLY GLY ILE SEQRES 10 D 266 GLY THR GLY GLY GLY MET ILE GLN GLY LEU GLY TYR LEU SEQRES 11 D 266 LEU SER GLN ILE THR ASP TYR LYS GLN LEU THR ASP MET SEQRES 12 D 266 ALA GLN HIS GLY ASP ARG ASN THR ILE ASP LEU LYS VAL SEQRES 13 D 266 ARG HIS ILE TYR LYS ASP THR GLU PRO PRO ILE PRO GLY SEQRES 14 D 266 ASP LEU THR ALA ALA ASN PHE GLY HIS VAL LEU HIS HIS SEQRES 15 D 266 LEU ASP ALA ASP PHE THR PRO SER ASN LYS LEU ALA ALA SEQRES 16 D 266 VAL ILE GLY VAL VAL GLY GLU VAL VAL THR THR MET ALA SEQRES 17 D 266 ILE THR VAL ALA ARG GLU PHE LYS THR GLU ASN ILE VAL SEQRES 18 D 266 TYR ILE GLY SER SER PHE HIS ASN ASN ALA LEU LEU ARG SEQRES 19 D 266 LYS VAL VAL GLU ASP TYR THR VAL LEU ARG GLY CYS LYS SEQRES 20 D 266 PRO TYR TYR VAL GLU ASN GLY ALA PHE SER GLY ALA ILE SEQRES 21 D 266 GLY ALA LEU TYR LEU GLU HET ADP A 301 27 HET C0D A 302 19 HET ADP B 301 27 HET C0D B 302 19 HET ADP C 301 27 HET C0D C 302 19 HET ADP D 301 27 HET C0D D 302 19 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM C0D (2R)-2-HYDROXY-3,3-DIMETHYL-N-[3-OXO-3-(PENTYLAMINO) HETNAM 2 C0D PROPYL]BUTANAMIDE FORMUL 5 ADP 4(C10 H15 N5 O10 P2) FORMUL 6 C0D 4(C14 H28 N2 O3) FORMUL 13 HOH *550(H2 O) HELIX 1 AA1 ASN A 31 GLN A 41 1 11 HELIX 2 AA2 ASN A 53 ILE A 61 1 9 HELIX 3 AA3 VAL A 69 GLN A 85 1 17 HELIX 4 AA4 GLY A 120 GLN A 133 1 14 HELIX 5 AA5 ASP A 136 HIS A 146 1 11 HELIX 6 AA6 VAL A 156 LYS A 161 1 6 HELIX 7 AA7 HIS A 178 HIS A 182 5 5 HELIX 8 AA8 THR A 188 PHE A 215 1 28 HELIX 9 AA9 GLY A 224 HIS A 228 5 5 HELIX 10 AB1 ASN A 230 ARG A 244 1 15 HELIX 11 AB2 ASN A 253 ALA A 255 5 3 HELIX 12 AB3 PHE A 256 GLU A 266 1 11 HELIX 13 AB4 ASN B 31 GLN B 42 1 12 HELIX 14 AB5 ASN B 53 ILE B 61 1 9 HELIX 15 AB6 VAL B 69 GLN B 85 1 17 HELIX 16 AB7 GLY B 120 GLN B 133 1 14 HELIX 17 AB8 ASP B 136 GLN B 145 1 10 HELIX 18 AB9 VAL B 156 TYR B 160 1 5 HELIX 19 AC1 HIS B 178 HIS B 182 5 5 HELIX 20 AC2 THR B 188 PHE B 215 1 28 HELIX 21 AC3 GLY B 224 HIS B 228 5 5 HELIX 22 AC4 ASN B 230 ARG B 244 1 15 HELIX 23 AC5 ASN B 253 ALA B 255 5 3 HELIX 24 AC6 PHE B 256 LEU B 265 1 10 HELIX 25 AC7 ASN C 31 GLN C 42 1 12 HELIX 26 AC8 ASN C 53 ILE C 61 1 9 HELIX 27 AC9 VAL C 69 GLN C 85 1 17 HELIX 28 AD1 GLY C 120 GLN C 133 1 14 HELIX 29 AD2 ASP C 136 HIS C 146 1 11 HELIX 30 AD3 VAL C 156 LYS C 161 1 6 HELIX 31 AD4 HIS C 178 HIS C 182 5 5 HELIX 32 AD5 THR C 188 PHE C 215 1 28 HELIX 33 AD6 GLY C 224 HIS C 228 5 5 HELIX 34 AD7 ASN C 230 ARG C 244 1 15 HELIX 35 AD8 ASN C 253 ALA C 255 5 3 HELIX 36 AD9 PHE C 256 LEU C 265 1 10 HELIX 37 AE1 ASN D 31 ASN D 40 1 10 HELIX 38 AE2 ASN D 53 ASN D 60 1 8 HELIX 39 AE3 VAL D 69 GLN D 85 1 17 HELIX 40 AE4 GLY D 120 GLN D 133 1 14 HELIX 41 AE5 ASP D 136 GLN D 145 1 10 HELIX 42 AE6 VAL D 156 TYR D 160 1 5 HELIX 43 AE7 HIS D 178 HIS D 182 5 5 HELIX 44 AE8 THR D 188 PHE D 215 1 28 HELIX 45 AE9 GLY D 224 HIS D 228 5 5 HELIX 46 AF1 ASN D 230 ARG D 244 1 15 HELIX 47 AF2 ASN D 253 ALA D 255 5 3 HELIX 48 AF3 PHE D 256 TYR D 264 1 9 SHEET 1 AA110 GLN A 66 ILE A 67 0 SHEET 2 AA110 LYS A 46 THR A 50 1 N LEU A 49 O GLN A 66 SHEET 3 AA110 LYS A 2 ALA A 7 1 N VAL A 3 O LYS A 46 SHEET 4 AA110 LEU A 11 GLN A 18 -1 O GLU A 17 N LYS A 2 SHEET 5 AA110 GLN A 21 LEU A 28 -1 O GLU A 27 N ILE A 12 SHEET 6 AA110 GLN C 21 LEU C 28 -1 O PHE C 24 N PHE A 24 SHEET 7 AA110 LEU C 11 GLN C 18 -1 N ILE C 12 O GLU C 27 SHEET 8 AA110 LYS C 2 ALA C 7 -1 N LYS C 2 O GLU C 17 SHEET 9 AA110 LYS C 46 THR C 50 1 O LYS C 46 N VAL C 3 SHEET 10 AA110 GLN C 66 PHE C 68 1 O GLN C 66 N LEU C 49 SHEET 1 AA2 5 GLN A 111 ILE A 117 0 SHEET 2 AA2 5 THR A 101 PHE A 106 -1 N LEU A 103 O GLY A 115 SHEET 3 AA2 5 TYR A 92 VAL A 97 -1 N ASN A 96 O SER A 102 SHEET 4 AA2 5 ASN A 219 ILE A 223 1 O VAL A 221 N ILE A 93 SHEET 5 AA2 5 LYS A 247 TYR A 250 1 O TYR A 249 N TYR A 222 SHEET 1 AA3 2 LEU A 154 LYS A 155 0 SHEET 2 AA3 2 THR A 172 ALA A 174 -1 O ALA A 173 N LEU A 154 SHEET 1 AA4 5 ARG B 22 LEU B 28 0 SHEET 2 AA4 5 LEU B 11 GLU B 17 -1 N ILE B 14 O LYS B 25 SHEET 3 AA4 5 LYS B 2 ALA B 7 -1 N GLY B 4 O VAL B 15 SHEET 4 AA4 5 LYS B 46 THR B 50 1 O THR B 50 N ALA B 7 SHEET 5 AA4 5 GLN B 66 ILE B 67 1 O GLN B 66 N LEU B 49 SHEET 1 AA5 5 GLN B 111 ILE B 117 0 SHEET 2 AA5 5 THR B 101 PHE B 106 -1 N LEU B 103 O GLY B 115 SHEET 3 AA5 5 TYR B 92 VAL B 97 -1 N TYR B 92 O PHE B 106 SHEET 4 AA5 5 ASN B 219 ILE B 223 1 O VAL B 221 N ILE B 93 SHEET 5 AA5 5 LYS B 247 TYR B 250 1 O TYR B 249 N TYR B 222 SHEET 1 AA6 2 LEU B 154 LYS B 155 0 SHEET 2 AA6 2 THR B 172 ALA B 174 -1 O ALA B 173 N LEU B 154 SHEET 1 AA7 5 GLN C 111 ILE C 117 0 SHEET 2 AA7 5 THR C 101 PHE C 106 -1 N LEU C 103 O GLY C 115 SHEET 3 AA7 5 TYR C 92 VAL C 97 -1 N ASN C 96 O SER C 102 SHEET 4 AA7 5 ASN C 219 ILE C 223 1 O VAL C 221 N ILE C 93 SHEET 5 AA7 5 LYS C 247 TYR C 249 1 O TYR C 249 N TYR C 222 SHEET 1 AA8 2 LEU C 154 LYS C 155 0 SHEET 2 AA8 2 THR C 172 ALA C 174 -1 O ALA C 173 N LEU C 154 SHEET 1 AA9 5 ARG D 22 LEU D 28 0 SHEET 2 AA9 5 LEU D 11 GLU D 17 -1 N ILE D 14 O LYS D 25 SHEET 3 AA9 5 LYS D 2 ALA D 7 -1 N LYS D 2 O GLU D 17 SHEET 4 AA9 5 LYS D 46 THR D 50 1 O THR D 50 N ALA D 7 SHEET 5 AA9 5 GLN D 66 ILE D 67 1 O GLN D 66 N LEU D 49 SHEET 1 AB1 5 GLN D 111 ILE D 117 0 SHEET 2 AB1 5 THR D 101 PHE D 106 -1 N LEU D 103 O GLY D 115 SHEET 3 AB1 5 TYR D 92 VAL D 97 -1 N TYR D 92 O PHE D 106 SHEET 4 AB1 5 ASN D 219 ILE D 223 1 O VAL D 221 N ILE D 93 SHEET 5 AB1 5 LYS D 247 TYR D 250 1 O TYR D 249 N TYR D 222 SHEET 1 AB2 2 LEU D 154 LYS D 155 0 SHEET 2 AB2 2 THR D 172 ALA D 174 -1 O ALA D 174 N LEU D 154 SITE 1 AC1 20 GLY A 8 GLY A 9 THR A 10 LEU A 11 SITE 2 AC1 20 LYS A 13 GLY A 98 THR A 99 GLY A 121 SITE 3 AC1 20 GLY A 122 GLN A 125 TYR A 137 GLY A 224 SITE 4 AC1 20 SER A 225 SER A 226 HOH A 405 HOH A 423 SITE 5 AC1 20 HOH A 446 HOH A 453 HOH A 503 GLN C 21 SITE 1 AC2 13 GLU A 70 PHE A 71 GLY A 100 THR A 101 SITE 2 AC2 13 SER A 102 ARG A 113 GLY A 116 ILE A 117 SITE 3 AC2 13 HOH A 414 HOH A 429 THR B 172 ALA B 173 SITE 4 AC2 13 GLU B 202 SITE 1 AC3 20 GLY B 8 GLY B 9 THR B 10 LEU B 11 SITE 2 AC3 20 LYS B 13 GLY B 98 THR B 99 GLY B 121 SITE 3 AC3 20 GLY B 122 GLN B 125 TYR B 137 GLY B 224 SITE 4 AC3 20 SER B 225 SER B 226 HOH B 403 HOH B 412 SITE 5 AC3 20 HOH B 448 HOH B 453 HOH B 492 HOH B 533 SITE 1 AC4 14 ILE A 167 THR A 172 ALA A 173 GLU A 202 SITE 2 AC4 14 TYR A 240 PHE B 71 GLY B 100 THR B 101 SITE 3 AC4 14 SER B 102 ARG B 113 GLY B 116 ILE B 117 SITE 4 AC4 14 HOH B 414 HOH B 456 SITE 1 AC5 20 GLN A 21 GLY C 8 GLY C 9 THR C 10 SITE 2 AC5 20 LEU C 11 LYS C 13 GLY C 98 THR C 99 SITE 3 AC5 20 GLY C 121 GLY C 122 GLN C 125 TYR C 137 SITE 4 AC5 20 GLY C 224 SER C 225 SER C 226 HOH C 404 SITE 5 AC5 20 HOH C 405 HOH C 413 HOH C 423 HOH C 455 SITE 1 AC6 12 PHE C 71 GLY C 100 THR C 101 SER C 102 SITE 2 AC6 12 ARG C 113 GLY C 116 ILE C 117 HOH C 422 SITE 3 AC6 12 HOH C 429 THR D 172 ALA D 173 GLU D 202 SITE 1 AC7 16 GLY D 8 GLY D 9 THR D 10 LEU D 11 SITE 2 AC7 16 LYS D 13 GLY D 98 THR D 99 GLY D 121 SITE 3 AC7 16 GLY D 122 GLN D 125 TYR D 137 SER D 225 SITE 4 AC7 16 SER D 226 HOH D 408 HOH D 411 HOH D 477 SITE 1 AC8 12 THR C 172 ALA C 173 GLU C 202 TYR C 240 SITE 2 AC8 12 GLU D 70 GLY D 100 THR D 101 SER D 102 SITE 3 AC8 12 ARG D 113 GLY D 116 ILE D 117 HOH D 435 CRYST1 73.388 57.042 134.077 90.00 99.88 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013626 0.000000 0.002373 0.00000 SCALE2 0.000000 0.017531 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007571 0.00000