HEADER PROTEIN BINDING 06-SEP-17 6AX0 TITLE STRUCTURE OF PR-10 ALLERGEN ARA H 8.01 IN COMPLEX WITH EPICATECHIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARA H 8 ALLERGEN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARACHIS HYPOGAEA; SOURCE 3 ORGANISM_COMMON: PEANUT; SOURCE 4 ORGANISM_TAXID: 3818; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PLANT PROTEIN, PEANUT, ALLERGEN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR L.R.OFFERMANN,J.YARBROUGH,J.MCBRIDE,B.K.HURLBURT,S.J.MALEKI,S.S.POTE, AUTHOR 2 M.CHRUSZCZ REVDAT 2 04-OCT-23 6AX0 1 LINK REVDAT 1 12-SEP-18 6AX0 0 JRNL AUTH L.R.OFFERMANN,J.YARBROUGH,J.MCBRIDE,B.K.HURLBURT,S.J.MALEKI, JRNL AUTH 2 S.S.POTE,M.CHRUSZCZ JRNL TITL STRUCTURE OF PR-10 ALLERGEN ARA H 8.01. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.700 REMARK 3 FREE R VALUE TEST SET COUNT : 557 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 682 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2328 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.26000 REMARK 3 B22 (A**2) : -2.79000 REMARK 3 B33 (A**2) : 1.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.72000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.349 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2418 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2245 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3289 ; 1.714 ; 2.012 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5237 ; 3.754 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 310 ; 5.365 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;35.166 ;26.404 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 396 ;14.813 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;26.821 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 376 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2686 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 424 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1246 ; 1.294 ; 3.441 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1245 ; 1.293 ; 3.439 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1554 ; 2.123 ; 5.156 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1555 ; 2.123 ; 5.158 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1172 ; 1.306 ; 3.684 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1173 ; 1.305 ; 3.687 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1736 ; 2.148 ; 5.470 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2570 ; 4.375 ;41.418 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2571 ; 4.375 ;41.436 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 157 B 2 157 9168 0.06 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7180 5.1970 15.9800 REMARK 3 T TENSOR REMARK 3 T11: 0.0457 T22: 0.1782 REMARK 3 T33: 0.0914 T12: 0.0298 REMARK 3 T13: 0.0056 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.9039 L22: 8.6861 REMARK 3 L33: 3.0722 L12: -1.1774 REMARK 3 L13: -0.2467 L23: 1.0117 REMARK 3 S TENSOR REMARK 3 S11: -0.1650 S12: -0.1771 S13: 0.0556 REMARK 3 S21: 0.4660 S22: 0.5798 S23: -0.2063 REMARK 3 S31: 0.0046 S32: -0.0499 S33: -0.4148 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 73 REMARK 3 ORIGIN FOR THE GROUP (A): -3.0600 -3.4470 8.1790 REMARK 3 T TENSOR REMARK 3 T11: 0.0754 T22: 0.1717 REMARK 3 T33: 0.2660 T12: -0.0242 REMARK 3 T13: 0.0392 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 3.8290 L22: 6.5786 REMARK 3 L33: 7.8928 L12: -1.2953 REMARK 3 L13: -4.3591 L23: 1.8797 REMARK 3 S TENSOR REMARK 3 S11: -0.1354 S12: 0.0330 S13: -0.7583 REMARK 3 S21: -0.3816 S22: -0.2910 S23: 0.7022 REMARK 3 S31: -0.1906 S32: 0.0469 S33: 0.4263 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 74 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7650 -2.6500 20.1470 REMARK 3 T TENSOR REMARK 3 T11: 0.1281 T22: 0.1494 REMARK 3 T33: 0.0153 T12: 0.0455 REMARK 3 T13: 0.0089 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 1.9198 L22: 10.9093 REMARK 3 L33: 6.0541 L12: 0.2336 REMARK 3 L13: 1.1924 L23: 6.0188 REMARK 3 S TENSOR REMARK 3 S11: -0.2860 S12: -0.2060 S13: -0.0436 REMARK 3 S21: 0.7894 S22: 0.2526 S23: 0.1822 REMARK 3 S31: 0.2400 S32: 0.0565 S33: 0.0334 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9160 -12.0960 14.6420 REMARK 3 T TENSOR REMARK 3 T11: 0.1721 T22: 0.1805 REMARK 3 T33: 0.0823 T12: 0.0480 REMARK 3 T13: 0.0226 T23: -0.0589 REMARK 3 L TENSOR REMARK 3 L11: 1.6782 L22: 9.8546 REMARK 3 L33: 1.2199 L12: 2.4810 REMARK 3 L13: 0.2973 L23: -0.8923 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: 0.0124 S13: -0.1165 REMARK 3 S21: -0.2183 S22: 0.0227 S23: -0.3179 REMARK 3 S31: 0.1422 S32: -0.0906 S33: -0.0394 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0280 13.3550 15.3720 REMARK 3 T TENSOR REMARK 3 T11: 0.0804 T22: 0.1341 REMARK 3 T33: 0.0305 T12: -0.0330 REMARK 3 T13: 0.0243 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 7.3572 L22: 16.6898 REMARK 3 L33: 4.1263 L12: -6.3514 REMARK 3 L13: 1.9455 L23: -1.5028 REMARK 3 S TENSOR REMARK 3 S11: -0.0534 S12: -0.2633 S13: 0.0352 REMARK 3 S21: 0.2658 S22: 0.1763 S23: -0.4289 REMARK 3 S31: -0.2854 S32: 0.3318 S33: -0.1230 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 22 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8920 23.3710 8.4440 REMARK 3 T TENSOR REMARK 3 T11: 0.1682 T22: 0.3549 REMARK 3 T33: 0.5445 T12: 0.0606 REMARK 3 T13: -0.1219 T23: -0.1709 REMARK 3 L TENSOR REMARK 3 L11: 3.6743 L22: 8.5977 REMARK 3 L33: 0.9604 L12: -1.1399 REMARK 3 L13: 0.3553 L23: 2.5959 REMARK 3 S TENSOR REMARK 3 S11: -0.3270 S12: -0.1395 S13: 0.1701 REMARK 3 S21: 0.6861 S22: 0.8857 S23: -1.9748 REMARK 3 S31: 0.1583 S32: 0.2881 S33: -0.5587 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 23 B 72 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7510 26.7760 -1.1230 REMARK 3 T TENSOR REMARK 3 T11: 0.0508 T22: 0.1126 REMARK 3 T33: 0.0621 T12: -0.0104 REMARK 3 T13: -0.0210 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 2.5858 L22: 9.6785 REMARK 3 L33: 5.3469 L12: -1.9760 REMARK 3 L13: -3.5905 L23: 1.1176 REMARK 3 S TENSOR REMARK 3 S11: 0.2109 S12: 0.1254 S13: 0.0159 REMARK 3 S21: -0.6068 S22: -0.0546 S23: 0.5424 REMARK 3 S31: -0.2233 S32: -0.1587 S33: -0.1563 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 73 B 119 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0350 29.5350 5.0810 REMARK 3 T TENSOR REMARK 3 T11: 0.0155 T22: 0.2091 REMARK 3 T33: 0.2086 T12: -0.0397 REMARK 3 T13: 0.0129 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 6.4166 L22: 10.7431 REMARK 3 L33: 1.5135 L12: -6.3377 REMARK 3 L13: 1.4593 L23: -0.1454 REMARK 3 S TENSOR REMARK 3 S11: 0.0396 S12: -0.0322 S13: 0.1354 REMARK 3 S21: -0.2166 S22: 0.2218 S23: -0.6811 REMARK 3 S31: -0.0112 S32: 0.1493 S33: -0.2613 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 120 B 137 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3620 41.1590 12.6200 REMARK 3 T TENSOR REMARK 3 T11: 0.0866 T22: 0.1903 REMARK 3 T33: 0.1762 T12: 0.0712 REMARK 3 T13: 0.0517 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 1.3454 L22: 10.6361 REMARK 3 L33: 4.1494 L12: 1.3896 REMARK 3 L13: 1.0517 L23: -4.4139 REMARK 3 S TENSOR REMARK 3 S11: -0.0446 S12: -0.0464 S13: 0.2183 REMARK 3 S21: 0.3524 S22: -0.1223 S23: 0.1732 REMARK 3 S31: -0.2527 S32: 0.0905 S33: 0.1668 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 138 B 157 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8840 15.6500 7.1770 REMARK 3 T TENSOR REMARK 3 T11: 0.0255 T22: 0.1587 REMARK 3 T33: 0.0897 T12: 0.0390 REMARK 3 T13: 0.0267 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 3.1489 L22: 12.8386 REMARK 3 L33: 3.3880 L12: 0.8379 REMARK 3 L13: 0.3120 L23: 5.5444 REMARK 3 S TENSOR REMARK 3 S11: -0.2334 S12: -0.3502 S13: -0.1328 REMARK 3 S21: 0.1597 S22: 0.2814 S23: 0.0419 REMARK 3 S31: 0.0961 S32: 0.2432 S33: -0.0479 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6AX0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000229192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9891 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 29.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.33300 REMARK 200 R SYM FOR SHELL (I) : 0.33300 REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4MAP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 MM POTASSIUM BROMIDE, 30% PEG 2000 REMARK 280 MME, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.03400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 64 CD CE NZ REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 ASN A 108 CG OD1 ND2 REMARK 470 LYS A 118 CD CE NZ REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 LYS B 64 CD CE NZ REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 ASN B 108 CG OD1 ND2 REMARK 470 LYS B 118 CD CE NZ REMARK 470 GLU B 129 CG CD OE1 OE2 REMARK 470 LYS B 133 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 74 93.70 -69.88 REMARK 500 THR A 155 -6.16 -54.11 REMARK 500 ASP B 74 93.61 -69.90 REMARK 500 THR B 155 -6.92 -53.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 31 O REMARK 620 2 ILE A 34 O 90.1 REMARK 620 3 VAL A 37 O 93.7 80.6 REMARK 620 4 HOH A 306 O 69.2 80.1 154.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO B 31 O REMARK 620 2 ILE B 34 O 89.4 REMARK 620 3 ASP B 35 O 154.4 65.1 REMARK 620 4 VAL B 37 O 92.1 82.0 86.8 REMARK 620 5 HOH B 302 O 60.6 76.3 108.1 144.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 28E A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 28E B 202 DBREF 6AX0 A 1 157 UNP Q6VT83 Q6VT83_ARAHY 1 157 DBREF 6AX0 B 1 157 UNP Q6VT83 Q6VT83_ARAHY 1 157 SEQRES 1 A 157 MET GLY VAL PHE THR PHE GLU ASP GLU ILE THR SER THR SEQRES 2 A 157 VAL PRO PRO ALA LYS LEU TYR ASN ALA MET LYS ASP ALA SEQRES 3 A 157 ASP SER ILE THR PRO LYS ILE ILE ASP ASP VAL LYS SER SEQRES 4 A 157 VAL GLU ILE VAL GLU GLY ASN GLY GLY PRO GLY THR ILE SEQRES 5 A 157 LYS LYS LEU THR ILE VAL GLU ASP GLY GLU THR LYS PHE SEQRES 6 A 157 ILE LEU HIS LYS VAL GLU SER ILE ASP GLU ALA ASN TYR SEQRES 7 A 157 ALA TYR ASN TYR SER VAL VAL GLY GLY VAL ALA LEU PRO SEQRES 8 A 157 PRO THR ALA GLU LYS ILE THR PHE GLU THR LYS LEU VAL SEQRES 9 A 157 GLU GLY PRO ASN GLY GLY SER ILE GLY LYS LEU THR LEU SEQRES 10 A 157 LYS TYR HIS THR LYS GLY ASP ALA LYS PRO ASP GLU GLU SEQRES 11 A 157 GLU LEU LYS LYS GLY LYS ALA LYS GLY GLU GLY LEU PHE SEQRES 12 A 157 ARG ALA ILE GLU GLY TYR VAL LEU ALA ASN PRO THR GLN SEQRES 13 A 157 TYR SEQRES 1 B 157 MET GLY VAL PHE THR PHE GLU ASP GLU ILE THR SER THR SEQRES 2 B 157 VAL PRO PRO ALA LYS LEU TYR ASN ALA MET LYS ASP ALA SEQRES 3 B 157 ASP SER ILE THR PRO LYS ILE ILE ASP ASP VAL LYS SER SEQRES 4 B 157 VAL GLU ILE VAL GLU GLY ASN GLY GLY PRO GLY THR ILE SEQRES 5 B 157 LYS LYS LEU THR ILE VAL GLU ASP GLY GLU THR LYS PHE SEQRES 6 B 157 ILE LEU HIS LYS VAL GLU SER ILE ASP GLU ALA ASN TYR SEQRES 7 B 157 ALA TYR ASN TYR SER VAL VAL GLY GLY VAL ALA LEU PRO SEQRES 8 B 157 PRO THR ALA GLU LYS ILE THR PHE GLU THR LYS LEU VAL SEQRES 9 B 157 GLU GLY PRO ASN GLY GLY SER ILE GLY LYS LEU THR LEU SEQRES 10 B 157 LYS TYR HIS THR LYS GLY ASP ALA LYS PRO ASP GLU GLU SEQRES 11 B 157 GLU LEU LYS LYS GLY LYS ALA LYS GLY GLU GLY LEU PHE SEQRES 12 B 157 ARG ALA ILE GLU GLY TYR VAL LEU ALA ASN PRO THR GLN SEQRES 13 B 157 TYR HET NA A 201 1 HET 28E A 202 21 HET NA B 201 1 HET 28E B 202 21 HETNAM NA SODIUM ION HETNAM 28E (2R,3R)-2-(3,4-DIHYDROXYPHENYL)-3,4-DIHYDRO-2H- HETNAM 2 28E CHROMENE-3,5,7-TRIOL HETSYN 28E EPICATECHIN FORMUL 3 NA 2(NA 1+) FORMUL 4 28E 2(C15 H14 O6) FORMUL 7 HOH *26(H2 O) HELIX 1 AA1 PRO A 15 ASP A 25 1 11 HELIX 2 AA2 ASP A 25 ILE A 34 1 10 HELIX 3 AA3 PRO A 107 GLY A 109 5 3 HELIX 4 AA4 ASP A 128 ASN A 153 1 26 HELIX 5 AA5 PRO A 154 TYR A 157 5 4 HELIX 6 AA6 PRO B 15 ASP B 25 1 11 HELIX 7 AA7 ASP B 25 ILE B 34 1 10 HELIX 8 AA8 PRO B 107 GLY B 109 5 3 HELIX 9 AA9 ASP B 128 ASN B 153 1 26 HELIX 10 AB1 PRO B 154 TYR B 157 5 4 SHEET 1 AA1 7 VAL A 3 SER A 12 0 SHEET 2 AA1 7 GLY A 110 THR A 121 -1 O GLY A 113 N ILE A 10 SHEET 3 AA1 7 ALA A 94 GLY A 106 -1 N LYS A 102 O LYS A 114 SHEET 4 AA1 7 ALA A 79 GLY A 87 -1 N TYR A 82 O PHE A 99 SHEET 5 AA1 7 GLU A 62 SER A 72 -1 N LEU A 67 O VAL A 85 SHEET 6 AA1 7 ILE A 52 GLU A 59 -1 N ILE A 57 O LYS A 64 SHEET 7 AA1 7 VAL A 37 GLU A 44 -1 N VAL A 43 O ILE A 52 SHEET 1 AA2 7 VAL B 3 SER B 12 0 SHEET 2 AA2 7 GLY B 110 THR B 121 -1 O GLY B 113 N ILE B 10 SHEET 3 AA2 7 ALA B 94 GLY B 106 -1 N LYS B 102 O LYS B 114 SHEET 4 AA2 7 ALA B 79 GLY B 87 -1 N TYR B 82 O PHE B 99 SHEET 5 AA2 7 GLU B 62 SER B 72 -1 N LEU B 67 O VAL B 85 SHEET 6 AA2 7 ILE B 52 GLU B 59 -1 N ILE B 57 O LYS B 64 SHEET 7 AA2 7 VAL B 37 GLU B 44 -1 N VAL B 43 O ILE B 52 LINK O PRO A 31 NA NA A 201 1555 1555 2.59 LINK O ILE A 34 NA NA A 201 1555 1555 2.85 LINK O VAL A 37 NA NA A 201 1555 1555 2.53 LINK NA NA A 201 O HOH A 306 1555 1555 2.20 LINK O PRO B 31 NA NA B 201 1555 1555 2.66 LINK O ILE B 34 NA NA B 201 1555 1555 2.78 LINK O ASP B 35 NA NA B 201 1555 1555 3.04 LINK O VAL B 37 NA NA B 201 1555 1555 2.53 LINK NA NA B 201 O HOH B 302 1555 1555 2.24 SITE 1 AC1 5 PRO A 31 ILE A 34 ASP A 35 VAL A 37 SITE 2 AC1 5 HOH A 306 SITE 1 AC2 8 ALA A 26 ASP A 27 THR A 30 ILE A 34 SITE 2 AC2 8 VAL A 40 HIS A 68 LYS A 138 HOH A 305 SITE 1 AC3 5 PRO B 31 ILE B 34 ASP B 35 VAL B 37 SITE 2 AC3 5 HOH B 302 SITE 1 AC4 8 ALA B 26 ASP B 27 THR B 30 ILE B 34 SITE 2 AC4 8 VAL B 40 HIS B 68 LYS B 138 HOH B 304 CRYST1 39.435 92.068 39.489 90.00 91.79 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025358 0.000000 0.000792 0.00000 SCALE2 0.000000 0.010862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025336 0.00000