HEADER HYDROLASE 06-SEP-17 6AX3 TITLE COMPLEX STRUCTURE OF JMJD5 AND SYMMETRIC DIMETHYL-ARGININE (SDMA) CAVEAT 6AX3 THE LIGAND 2MR HAS A RSR VALUE OF 0.93 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 8; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: JMJC DOMAIN-CONTAINING PROTEIN 5,JUMONJI DOMAIN-CONTAINING COMPND 5 PROTEIN 5; COMPND 6 EC: 1.14.11.27; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KDM8, JMJD5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS DEMETHYLASE, JUMONJI, HISTONE, ENDOPEPTIDASE, EXOPEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LEE,H.LIU,Y.WANG,S.DAI,G.ZHANG REVDAT 3 04-OCT-23 6AX3 1 REMARK REVDAT 2 07-MAR-18 6AX3 1 JRNL REVDAT 1 28-FEB-18 6AX3 0 JRNL AUTH H.LIU,C.WANG,S.LEE,F.NING,Y.WANG,Q.ZHANG,Z.CHEN,J.ZANG, JRNL AUTH 2 J.NIX,S.DAI,P.MARRACK,J.HAGMAN,J.KAPPLER,G.ZHANG JRNL TITL SPECIFIC RECOGNITION OF ARGININE METHYLATED HISTONE TAILS BY JRNL TITL 2 JMJD5 AND JMJD7. JRNL REF SCI REP V. 8 3275 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29459673 JRNL DOI 10.1038/S41598-018-21432-8 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 11946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.6437 - 4.6783 1.00 1322 148 0.1962 0.2309 REMARK 3 2 4.6783 - 3.7140 1.00 1231 136 0.1696 0.2043 REMARK 3 3 3.7140 - 3.2447 1.00 1230 136 0.1962 0.2520 REMARK 3 4 3.2447 - 2.9482 1.00 1200 135 0.2148 0.2856 REMARK 3 5 2.9482 - 2.7369 0.99 1205 133 0.2282 0.2774 REMARK 3 6 2.7369 - 2.5756 0.99 1212 135 0.2414 0.3339 REMARK 3 7 2.5756 - 2.4466 0.98 1192 132 0.2372 0.3055 REMARK 3 8 2.4466 - 2.3401 0.94 1112 122 0.2398 0.3269 REMARK 3 9 2.3401 - 2.2500 0.87 1048 117 0.2507 0.3208 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1942 REMARK 3 ANGLE : 1.182 2652 REMARK 3 CHIRALITY : 0.063 280 REMARK 3 PLANARITY : 0.007 345 REMARK 3 DIHEDRAL : 12.162 1120 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AX3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000229911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11947 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 41.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5FBJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.0 8% PEG 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.72800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.57750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.35300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.57750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.72800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.35300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 193 CB CG CD OE1 NE2 REMARK 470 ARG A 196 CZ NH1 NH2 REMARK 470 GLN A 219 CB CG CD OE1 NE2 REMARK 470 LYS A 220 CG CD CE NZ REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 SER A 241 OG REMARK 470 GLN A 250 CG CD OE1 NE2 REMARK 470 GLU A 266 CG CD OE1 OE2 REMARK 470 ARG A 268 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 269 CG OD1 OD2 REMARK 470 GLN A 287 CB CG CD OE1 NE2 REMARK 470 ASP A 299 CG OD1 OD2 REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 470 GLU A 304 CG CD OE1 OE2 REMARK 470 MET A 333 CG SD CE REMARK 470 ASP A 353 CB CG OD1 OD2 REMARK 470 LEU A 356 CG CD1 CD2 REMARK 470 ASP A 369 CG OD1 OD2 REMARK 470 LYS A 378 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS A 188 NE2 REMARK 480 ARG A 189 CZ REMARK 480 GLN A 198 OE1 REMARK 480 HIS A 214 CD2 REMARK 480 GLU A 224 CD REMARK 480 GLU A 238 CD REMARK 480 SER A 241 CA REMARK 480 ARG A 242 CZ REMARK 480 TYR A 243 CA CE2 REMARK 480 THR A 244 CB REMARK 480 ASP A 245 O CG REMARK 480 ASP A 280 OD2 REMARK 480 GLU A 284 CD REMARK 480 ASP A 293 CG REMARK 480 GLU A 302 CD REMARK 480 GLN A 344 CD REMARK 480 HIS A 355 C ND1 REMARK 480 LEU A 356 C REMARK 480 HIS A 358 NE2 REMARK 480 ASP A 406 OD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 664 O HOH A 708 2.07 REMARK 500 NZ LYS A 336 O3 AKG A 502 2.09 REMARK 500 N GLU A 301 O HOH A 601 2.09 REMARK 500 OD1 ASP A 364 O HOH A 602 2.10 REMARK 500 OG1 THR A 251 O HOH A 603 2.16 REMARK 500 NH2 ARG A 339 O HOH A 604 2.18 REMARK 500 O LEU A 297 O HOH A 605 2.19 REMARK 500 O HOH A 608 O HOH A 669 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 247 C - N - CA ANGL. DEV. = 18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 189 70.61 31.15 REMARK 500 PHE A 199 -60.46 -131.77 REMARK 500 VAL A 211 -60.02 -109.08 REMARK 500 THR A 244 -78.37 -59.28 REMARK 500 ILE A 263 -59.15 -126.92 REMARK 500 GLU A 266 62.33 27.38 REMARK 500 VAL A 332 -58.20 -120.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 246 GLU A 247 148.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 321 NE2 REMARK 620 2 ASP A 323 OD2 94.1 REMARK 620 3 HIS A 400 NE2 87.0 84.5 REMARK 620 4 AKG A 502 O2 166.0 83.2 106.3 REMARK 620 5 AKG A 502 O5 103.5 162.4 95.3 79.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2MR A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 DBREF 6AX3 A 184 416 UNP Q8N371 KDM8_HUMAN 222 454 SEQADV 6AX3 GLY A 181 UNP Q8N371 EXPRESSION TAG SEQADV 6AX3 SER A 182 UNP Q8N371 EXPRESSION TAG SEQADV 6AX3 GLY A 183 UNP Q8N371 EXPRESSION TAG SEQRES 1 A 236 GLY SER GLY VAL PRO ARG LEU HIS ARG PRO SER LEU GLN SEQRES 2 A 236 HIS PHE ARG GLU GLN PHE LEU VAL PRO GLY ARG PRO VAL SEQRES 3 A 236 ILE LEU LYS GLY VAL ALA ASP HIS TRP PRO CYS MET GLN SEQRES 4 A 236 LYS TRP SER LEU GLU TYR ILE GLN GLU ILE ALA GLY CYS SEQRES 5 A 236 ARG THR VAL PRO VAL GLU VAL GLY SER ARG TYR THR ASP SEQRES 6 A 236 GLU GLU TRP SER GLN THR LEU MET THR VAL ASN GLU PHE SEQRES 7 A 236 ILE SER LYS TYR ILE VAL ASN GLU PRO ARG ASP VAL GLY SEQRES 8 A 236 TYR LEU ALA GLN HIS GLN LEU PHE ASP GLN ILE PRO GLU SEQRES 9 A 236 LEU LYS GLN ASP ILE SER ILE PRO ASP TYR CYS SER LEU SEQRES 10 A 236 GLY ASP GLY GLU GLU GLU GLU ILE THR ILE ASN ALA TRP SEQRES 11 A 236 PHE GLY PRO GLN GLY THR ILE SER PRO LEU HIS GLN ASP SEQRES 12 A 236 PRO GLN GLN ASN PHE LEU VAL GLN VAL MET GLY ARG LYS SEQRES 13 A 236 TYR ILE ARG LEU TYR SER PRO GLN GLU SER GLY ALA LEU SEQRES 14 A 236 TYR PRO HIS ASP THR HIS LEU LEU HIS ASN THR SER GLN SEQRES 15 A 236 VAL ASP VAL GLU ASN PRO ASP LEU GLU LYS PHE PRO LYS SEQRES 16 A 236 PHE ALA LYS ALA PRO PHE LEU SER CYS ILE LEU SER PRO SEQRES 17 A 236 GLY GLU ILE LEU PHE ILE PRO VAL LYS TYR TRP HIS TYR SEQRES 18 A 236 VAL ARG ALA LEU ASP LEU SER PHE SER VAL SER PHE TRP SEQRES 19 A 236 TRP SER HET 2MR A 501 14 HET AKG A 502 10 HET ZN A 503 1 HETNAM 2MR N3, N4-DIMETHYLARGININE HETNAM AKG 2-OXOGLUTARIC ACID HETNAM ZN ZINC ION FORMUL 2 2MR C8 H18 N4 O2 FORMUL 3 AKG C5 H6 O5 FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *117(H2 O) HELIX 1 AA1 SER A 191 PHE A 199 1 9 HELIX 2 AA2 TRP A 215 TRP A 221 1 7 HELIX 3 AA3 SER A 222 GLY A 231 1 10 HELIX 4 AA4 VAL A 255 ILE A 263 1 9 HELIX 5 AA5 GLN A 277 ILE A 282 1 6 HELIX 6 AA6 ILE A 282 GLN A 287 1 6 HELIX 7 AA7 PRO A 292 GLY A 298 5 7 HELIX 8 AA8 GLU A 301 ILE A 305 5 5 HELIX 9 AA9 SER A 342 LEU A 349 5 8 HELIX 10 AB1 PHE A 373 ALA A 377 5 5 SHEET 1 AA1 5 SER A 182 GLY A 183 0 SHEET 2 AA1 5 LEU A 382 LEU A 386 1 O SER A 383 N SER A 182 SHEET 3 AA1 5 LYS A 336 TYR A 341 -1 N LEU A 340 O LEU A 382 SHEET 4 AA1 5 TRP A 399 ALA A 404 -1 O ARG A 403 N TYR A 337 SHEET 5 AA1 5 ILE A 317 HIS A 321 -1 N SER A 318 O VAL A 402 SHEET 1 AA2 9 ARG A 186 HIS A 188 0 SHEET 2 AA2 9 VAL A 206 LYS A 209 1 O LYS A 209 N LEU A 187 SHEET 3 AA2 9 ILE A 391 ILE A 394 -1 O PHE A 393 N VAL A 206 SHEET 4 AA2 9 GLN A 326 MET A 333 -1 N ASN A 327 O ILE A 394 SHEET 5 AA2 9 SER A 408 TRP A 415 -1 O VAL A 411 N VAL A 330 SHEET 6 AA2 9 THR A 306 GLY A 312 -1 N THR A 306 O TRP A 414 SHEET 7 AA2 9 GLY A 271 HIS A 276 -1 N HIS A 276 O ALA A 309 SHEET 8 AA2 9 THR A 234 VAL A 239 -1 N GLU A 238 O TYR A 272 SHEET 9 AA2 9 SER A 249 THR A 254 -1 O MET A 253 N VAL A 235 LINK NE2 HIS A 321 ZN ZN A 503 1555 1555 1.95 LINK OD2 ASP A 323 ZN ZN A 503 1555 1555 2.10 LINK NE2 HIS A 400 ZN ZN A 503 1555 1555 2.28 LINK O2 AKG A 502 ZN ZN A 503 1555 1555 2.18 LINK O5 AKG A 502 ZN ZN A 503 1555 1555 2.28 SITE 1 AC1 12 GLU A 238 GLN A 275 TRP A 310 ILE A 317 SITE 2 AC1 12 SER A 318 HIS A 321 ASP A 323 TRP A 414 SITE 3 AC1 12 AKG A 502 ZN A 503 HOH A 614 HOH A 667 SITE 1 AC2 14 TYR A 272 TRP A 310 SER A 318 HIS A 321 SITE 2 AC2 14 ASP A 323 ASN A 327 LYS A 336 HIS A 400 SITE 3 AC2 14 VAL A 402 SER A 412 TRP A 414 2MR A 501 SITE 4 AC2 14 ZN A 503 HOH A 621 SITE 1 AC3 5 HIS A 321 ASP A 323 HIS A 400 2MR A 501 SITE 2 AC3 5 AKG A 502 CRYST1 49.456 64.706 77.155 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020220 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015455 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012961 0.00000