HEADER NUCLEAR PROTEIN 06-SEP-17 6AX5 TITLE RPT1 REGION OF INI1/SNF5/SMARCB1_HUMAN - SWI/SNF-RELATED MATRIX- TITLE 2 ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY B MEMBER TITLE 3 1. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR COMPND 3 OF CHROMATIN SUBFAMILY B MEMBER 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 174-256; COMPND 6 SYNONYM: BRG1-ASSOCIATED FACTOR 47,BAF47,INTEGRASE INTERACTOR 1 COMPND 7 PROTEIN,SNF5 HOMOLOG,HSNF5; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMARCB1, BAF47, INI1, SNF5L1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RPT1, INI1, ACTIN-DEPENDENT REGULATOR, NUCLEAR PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.E.GIRVIN,S.M.CAHILL,R.HARRIS,D.COWBURN,M.SPIRA,X.WU,R.PRAKASH, AUTHOR 2 M.BERNOWITZ,S.C.ALMO,G.V.KALPANA REVDAT 3 14-JUN-23 6AX5 1 REMARK REVDAT 2 26-MAY-21 6AX5 1 JRNL REMARK REVDAT 1 18-OCT-17 6AX5 0 JRNL AUTH U.DIXIT,S.BHUTORIA,X.WU,L.QIU,M.SPIRA,S.MATHEW,R.HARRIS, JRNL AUTH 2 L.J.ADAMS,S.CAHILL,R.PATHAK,P.RAJESH KUMAR,M.NGUYEN, JRNL AUTH 3 S.A.ACHARYA,M.BRENOWITZ,S.C.ALMO,X.ZOU,A.C.STEVEN,D.COWBURN, JRNL AUTH 4 M.GIRVIN,G.V.KALPANA JRNL TITL INI1/SMARCB1 RPT1 DOMAIN MIMICS TAR RNA IN BINDING TO JRNL TITL 2 INTEGRASE TO FACILITATE HIV-1 REPLICATION. JRNL REF NAT COMMUN V. 12 2743 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33980829 JRNL DOI 10.1038/S41467-021-22733-9 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CCPNMR, XPLOR_NIH REMARK 3 AUTHORS : CCPN (CCPNMR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR REMARK 4 REMARK 4 6AX5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000229883. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 160 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 400 UM [U-99% 13C; U-99% 15N] REMARK 210 RPT1/INI1, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D HNCO; REMARK 210 3D CBCA(CO)NH; 3D HNCA; 3D REMARK 210 HNCACB; 3D HNHA; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; DRX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, ANALYSIS, CNS, ARIA REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 220 HG CYS A 223 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 227 81.53 67.92 REMARK 500 1 ASP A 259 -61.72 74.73 REMARK 500 1 GLN A 260 -76.86 -103.48 REMARK 500 1 ILE A 263 80.73 48.12 REMARK 500 2 ASP A 196 18.76 59.68 REMARK 500 2 SER A 252 72.25 58.35 REMARK 500 2 SER A 258 65.87 60.44 REMARK 500 2 GLN A 260 99.86 66.19 REMARK 500 2 ARG A 261 89.16 74.54 REMARK 500 3 GLN A 257 69.47 -114.26 REMARK 500 3 ASP A 259 -86.87 59.81 REMARK 500 4 GLU A 210 -75.46 -69.17 REMARK 500 4 LYS A 211 -37.85 70.79 REMARK 500 4 ILE A 253 -71.89 -72.76 REMARK 500 4 GLN A 260 -83.86 -83.78 REMARK 500 4 ARG A 261 -66.91 -142.94 REMARK 500 5 GLN A 257 83.88 57.29 REMARK 500 5 SER A 258 93.26 56.54 REMARK 500 5 GLN A 260 -83.67 -74.17 REMARK 500 5 ARG A 261 26.13 -166.16 REMARK 500 6 GLN A 260 -3.29 70.56 REMARK 500 6 VAL A 262 -80.49 -104.30 REMARK 500 7 ASN A 229 105.14 -55.17 REMARK 500 7 SER A 252 -49.83 -169.01 REMARK 500 7 SER A 258 61.49 64.21 REMARK 500 8 ASP A 196 -67.35 65.84 REMARK 500 8 ASP A 227 68.47 62.09 REMARK 500 8 ASP A 251 98.78 65.60 REMARK 500 8 LEU A 254 -164.23 56.92 REMARK 500 8 ASP A 259 -60.73 67.78 REMARK 500 8 GLN A 260 -143.69 -91.96 REMARK 500 9 ASP A 251 -82.32 65.09 REMARK 500 9 ASP A 259 -47.47 71.35 REMARK 500 10 THR A 250 -64.26 -151.61 REMARK 500 10 GLN A 257 -49.13 71.99 REMARK 500 10 GLN A 260 -67.01 66.56 REMARK 500 11 ASP A 251 -85.42 -81.21 REMARK 500 11 SER A 252 -37.20 -178.73 REMARK 500 11 SER A 258 -71.85 -144.46 REMARK 500 11 ASP A 259 -41.45 152.92 REMARK 500 11 ARG A 261 83.34 64.85 REMARK 500 11 VAL A 262 105.13 65.77 REMARK 500 12 ASP A 196 -78.35 65.40 REMARK 500 12 PRO A 249 -150.91 -84.81 REMARK 500 12 ASP A 259 -67.68 69.42 REMARK 500 12 GLN A 260 -69.08 -132.61 REMARK 500 12 ARG A 261 28.57 -141.06 REMARK 500 13 GLU A 210 -75.39 -54.53 REMARK 500 13 LYS A 211 -94.47 165.31 REMARK 500 13 SER A 258 -9.75 -145.96 REMARK 500 REMARK 500 THIS ENTRY HAS 82 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27243 RELATED DB: BMRB DBREF 6AX5 A 183 265 UNP Q12824 SNF5_HUMAN 174 256 SEQRES 1 A 83 PRO GLU VAL LEU VAL PRO ILE ARG LEU ASP MET GLU ILE SEQRES 2 A 83 ASP GLY GLN LYS LEU ARG ASP ALA PHE THR TRP ASN MET SEQRES 3 A 83 ASN GLU LYS LEU MET THR PRO GLU MET PHE SER GLU ILE SEQRES 4 A 83 LEU CYS ASP ASP LEU ASP LEU ASN PRO LEU THR PHE VAL SEQRES 5 A 83 PRO ALA ILE ALA SER ALA ILE ARG GLN GLN ILE GLU SER SEQRES 6 A 83 TYR PRO THR ASP SER ILE LEU GLU ASP GLN SER ASP GLN SEQRES 7 A 83 ARG VAL ILE ILE LYS HELIX 1 AA1 THR A 214 LEU A 226 1 13 HELIX 2 AA2 ASN A 229 SER A 247 1 19 SHEET 1 AA1 2 LEU A 186 ILE A 195 0 SHEET 2 AA1 2 GLN A 198 ASN A 207 -1 O LEU A 200 N MET A 193 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1