HEADER OXIDOREDUCTASE 06-SEP-17 6AX7 TITLE THE CRYSTAL STRUCTURE OF A LYSYL HYDROXYLASE FROM ACANTHAMOEBA TITLE 2 POLYPHAGA MIMIVIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROCOLLAGEN LYSYL HYDROXYLASE AND GLYCOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LYSYL HYDROXYLASE DOMAIN (UNP RESIDUES 680-895); COMPND 5 SYNONYM: LHGT, LYSYL HYDROXYLASE, PROCOLLAGEN-LYSINE, 2-OXOGLUTARATE COMPND 6 5-DIOXYGENASE; COMPND 7 EC: 1.14.11.4; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ACANTHAMOEBA POLYPHAGA MIMIVIRUS; SOURCE 4 ORGANISM_COMMON: APMV; SOURCE 5 ORGANISM_TAXID: 212035 KEYWDS DOUBLE-STRANDED ?-HELIX, DIMER, DIOXYGENASE, COLLAGEN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.GUO,C.TSAI,M.D.MILLER,S.ALVARADO,J.A.TAINER,G.N.PHILLIPS JR., AUTHOR 2 J.M.KURIE REVDAT 4 04-OCT-23 6AX7 1 LINK REVDAT 3 04-DEC-19 6AX7 1 REMARK REVDAT 2 28-FEB-18 6AX7 1 REMARK REVDAT 1 21-FEB-18 6AX7 0 JRNL AUTH H.F.GUO,C.L.TSAI,M.TERAJIMA,X.TAN,P.BANERJEE,M.D.MILLER, JRNL AUTH 2 X.LIU,J.YU,J.BYEMERWA,S.ALVARADO,T.S.KAOUD,K.N.DALBY, JRNL AUTH 3 N.BOTA-RABASSEDAS,Y.CHEN,M.YAMAUCHI,J.A.TAINER,G.N.PHILLIPS, JRNL AUTH 4 J.M.KURIE JRNL TITL PRO-METASTATIC COLLAGEN LYSYL HYDROXYLASE DIMER ASSEMBLIES JRNL TITL 2 STABILIZED BY FE2+-BINDING. JRNL REF NAT COMMUN V. 9 512 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29410444 JRNL DOI 10.1038/S41467-018-02859-Z REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 34795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9666 - 4.7061 0.98 2688 144 0.1797 0.2249 REMARK 3 2 4.7061 - 3.7358 0.99 2602 133 0.1379 0.1598 REMARK 3 3 3.7358 - 3.2637 0.99 2550 148 0.1570 0.1943 REMARK 3 4 3.2637 - 2.9653 1.00 2570 132 0.1784 0.2041 REMARK 3 5 2.9653 - 2.7528 1.00 2526 138 0.1825 0.2173 REMARK 3 6 2.7528 - 2.5905 1.00 2537 138 0.1898 0.2120 REMARK 3 7 2.5905 - 2.4608 1.00 2544 113 0.1967 0.2098 REMARK 3 8 2.4608 - 2.3537 1.00 2516 136 0.1961 0.2486 REMARK 3 9 2.3537 - 2.2630 1.00 2526 124 0.2032 0.2223 REMARK 3 10 2.2630 - 2.1850 1.00 2497 147 0.2208 0.2564 REMARK 3 11 2.1850 - 2.1166 1.00 2509 139 0.2287 0.2918 REMARK 3 12 2.1166 - 2.0561 1.00 2508 127 0.2403 0.2801 REMARK 3 13 2.0561 - 2.0020 1.00 2469 134 0.2713 0.3032 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3372 REMARK 3 ANGLE : 0.509 4577 REMARK 3 CHIRALITY : 0.042 480 REMARK 3 PLANARITY : 0.003 576 REMARK 3 DIHEDRAL : 2.370 2341 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 9.1309 36.6256 8.7048 REMARK 3 T TENSOR REMARK 3 T11: 0.0514 T22: 0.0960 REMARK 3 T33: 0.0767 T12: 0.0116 REMARK 3 T13: 0.0116 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.2469 L22: 0.6745 REMARK 3 L33: 0.4279 L12: 0.2551 REMARK 3 L13: 0.2519 L23: 0.1778 REMARK 3 S TENSOR REMARK 3 S11: -0.0199 S12: 0.0298 S13: -0.0048 REMARK 3 S21: 0.0000 S22: 0.0286 S23: 0.0072 REMARK 3 S31: 0.0319 S32: 0.0538 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AX7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000229943. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34800 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.952 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 6AX6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 400 NL DROP CONTAINING 1:1 15 MG/ML REMARK 280 L230 RECOMBINANT PROTEIN TO 0.2 M POTASSIUM CITRATE, 20% PEG3350, REMARK 280 0.5% W/V N-DODECYL-N,N-DIMETHYLAMINE-N-OXIDE, PH 8.29, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.01150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.73000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.73000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.01725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.73000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.73000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.00575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.73000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.73000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.01725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.73000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.73000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.00575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.01150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1152 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1197 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 661 REMARK 465 GLY A 662 REMARK 465 SER A 663 REMARK 465 SER A 664 REMARK 465 HIS A 665 REMARK 465 HIS A 666 REMARK 465 HIS A 667 REMARK 465 HIS A 668 REMARK 465 HIS A 669 REMARK 465 HIS A 670 REMARK 465 ALA A 671 REMARK 465 SER A 672 REMARK 465 GLY A 673 REMARK 465 LEU A 674 REMARK 465 VAL A 675 REMARK 465 PRO A 676 REMARK 465 ARG A 677 REMARK 465 GLY A 678 REMARK 465 SER A 679 REMARK 465 VAL A 680 REMARK 465 PRO A 681 REMARK 465 THR A 682 REMARK 465 LYS A 750 REMARK 465 GLY A 751 REMARK 465 GLY A 752 REMARK 465 ASP A 753 REMARK 465 SER A 754 REMARK 465 TYR A 755 REMARK 465 PHE A 756 REMARK 465 ASP A 757 REMARK 465 PRO A 758 REMARK 465 ARG A 759 REMARK 465 ILE A 760 REMARK 465 GLY A 761 REMARK 465 GLY A 762 REMARK 465 VAL A 763 REMARK 465 GLU A 764 REMARK 465 SER A 765 REMARK 465 TYR A 766 REMARK 465 PRO A 767 REMARK 465 MET B 661 REMARK 465 GLY B 662 REMARK 465 SER B 663 REMARK 465 SER B 664 REMARK 465 HIS B 665 REMARK 465 HIS B 666 REMARK 465 HIS B 667 REMARK 465 HIS B 668 REMARK 465 HIS B 669 REMARK 465 HIS B 670 REMARK 465 ALA B 671 REMARK 465 SER B 672 REMARK 465 GLY B 673 REMARK 465 LEU B 674 REMARK 465 VAL B 675 REMARK 465 PRO B 676 REMARK 465 ARG B 677 REMARK 465 GLY B 678 REMARK 465 SER B 679 REMARK 465 VAL B 680 REMARK 465 PRO B 681 REMARK 465 THR B 682 REMARK 465 GLY B 751 REMARK 465 GLY B 752 REMARK 465 ASP B 753 REMARK 465 SER B 754 REMARK 465 TYR B 755 REMARK 465 PHE B 756 REMARK 465 ASP B 757 REMARK 465 PRO B 758 REMARK 465 ARG B 759 REMARK 465 ILE B 760 REMARK 465 GLY B 761 REMARK 465 GLY B 762 REMARK 465 VAL B 763 REMARK 465 GLU B 764 REMARK 465 SER B 765 REMARK 465 TYR B 766 REMARK 465 GLN B 819 REMARK 465 SER B 820 REMARK 465 GLU B 821 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 688 34.42 -87.20 REMARK 500 ARG A 692 65.56 -116.22 REMARK 500 ASN A 711 88.06 -153.77 REMARK 500 LEU A 729 -46.52 -135.38 REMARK 500 LEU A 747 30.06 -99.63 REMARK 500 ARG A 818 79.05 -151.43 REMARK 500 SER A 820 166.06 64.32 REMARK 500 ALA A 846 -133.03 60.04 REMARK 500 LEU A 873 -52.33 76.43 REMARK 500 ALA A 875 44.62 -146.04 REMARK 500 ASP B 688 34.87 -85.88 REMARK 500 ARG B 692 63.11 -119.74 REMARK 500 ASN B 711 80.82 -158.40 REMARK 500 LEU B 729 -49.30 -132.30 REMARK 500 ALA B 846 -136.79 61.03 REMARK 500 LEU B 873 -54.12 72.10 REMARK 500 ALA B 875 43.81 -144.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1200 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1201 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B1243 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B1244 DISTANCE = 5.96 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 901 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 825 NE2 REMARK 620 2 ASP A 827 OD2 87.5 REMARK 620 3 HIS A 877 NE2 91.1 107.3 REMARK 620 4 HOH A1137 O 83.4 164.3 85.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 901 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 825 NE2 REMARK 620 2 ASP B 827 OD1 92.9 REMARK 620 3 HIS B 877 NE2 96.9 92.1 REMARK 620 4 HOH B1128 O 167.2 99.3 78.8 REMARK 620 5 HOH B1201 O 95.2 166.3 97.9 73.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 B 901 DBREF 6AX7 A 680 895 UNP Q5UQC3 PLOD_MIMIV 680 895 DBREF 6AX7 B 680 895 UNP Q5UQC3 PLOD_MIMIV 680 895 SEQADV 6AX7 MET A 661 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 GLY A 662 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 SER A 663 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 SER A 664 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 HIS A 665 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 HIS A 666 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 HIS A 667 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 HIS A 668 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 HIS A 669 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 HIS A 670 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 ALA A 671 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 SER A 672 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 GLY A 673 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 LEU A 674 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 VAL A 675 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 PRO A 676 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 ARG A 677 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 GLY A 678 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 SER A 679 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 MET B 661 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 GLY B 662 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 SER B 663 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 SER B 664 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 HIS B 665 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 HIS B 666 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 HIS B 667 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 HIS B 668 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 HIS B 669 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 HIS B 670 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 ALA B 671 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 SER B 672 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 GLY B 673 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 LEU B 674 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 VAL B 675 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 PRO B 676 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 ARG B 677 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 GLY B 678 UNP Q5UQC3 EXPRESSION TAG SEQADV 6AX7 SER B 679 UNP Q5UQC3 EXPRESSION TAG SEQRES 1 A 235 MET GLY SER SER HIS HIS HIS HIS HIS HIS ALA SER GLY SEQRES 2 A 235 LEU VAL PRO ARG GLY SER VAL PRO THR GLU VAL THR LEU SEQRES 3 A 235 TYR ASP LEU PRO THR ARG LYS GLU GLU TRP GLU LYS LYS SEQRES 4 A 235 TYR LEU HIS PRO GLU PHE LEU SER HIS LEU GLN ASN PHE SEQRES 5 A 235 LYS ASP PHE ASP TYR THR GLU ILE CYS ASN ASP VAL TYR SEQRES 6 A 235 SER PHE PRO LEU PHE THR PRO ALA PHE CYS LYS GLU VAL SEQRES 7 A 235 ILE GLU VAL MET ASP LYS ALA ASN LEU TRP SER LYS GLY SEQRES 8 A 235 GLY ASP SER TYR PHE ASP PRO ARG ILE GLY GLY VAL GLU SEQRES 9 A 235 SER TYR PRO THR GLN ASP THR GLN LEU TYR GLU VAL GLY SEQRES 10 A 235 LEU ASP LYS GLN TRP HIS TYR VAL VAL PHE ASN TYR VAL SEQRES 11 A 235 ALA PRO PHE VAL ARG HIS LEU TYR ASN ASN TYR LYS THR SEQRES 12 A 235 LYS ASP ILE ASN LEU ALA PHE VAL VAL LYS TYR ASP MET SEQRES 13 A 235 GLU ARG GLN SER GLU LEU ALA PRO HIS HIS ASP SER SER SEQRES 14 A 235 THR TYR THR LEU ASN ILE ALA LEU ASN GLU TYR GLY LYS SEQRES 15 A 235 GLU TYR THR ALA GLY GLY CYS GLU PHE ILE ARG HIS LYS SEQRES 16 A 235 PHE ILE TRP GLN GLY GLN LYS VAL GLY TYR ALA THR ILE SEQRES 17 A 235 HIS ALA GLY LYS LEU LEU ALA TYR HIS ARG ALA LEU PRO SEQRES 18 A 235 ILE THR SER GLY LYS ARG TYR ILE LEU VAL SER PHE VAL SEQRES 19 A 235 ASN SEQRES 1 B 235 MET GLY SER SER HIS HIS HIS HIS HIS HIS ALA SER GLY SEQRES 2 B 235 LEU VAL PRO ARG GLY SER VAL PRO THR GLU VAL THR LEU SEQRES 3 B 235 TYR ASP LEU PRO THR ARG LYS GLU GLU TRP GLU LYS LYS SEQRES 4 B 235 TYR LEU HIS PRO GLU PHE LEU SER HIS LEU GLN ASN PHE SEQRES 5 B 235 LYS ASP PHE ASP TYR THR GLU ILE CYS ASN ASP VAL TYR SEQRES 6 B 235 SER PHE PRO LEU PHE THR PRO ALA PHE CYS LYS GLU VAL SEQRES 7 B 235 ILE GLU VAL MET ASP LYS ALA ASN LEU TRP SER LYS GLY SEQRES 8 B 235 GLY ASP SER TYR PHE ASP PRO ARG ILE GLY GLY VAL GLU SEQRES 9 B 235 SER TYR PRO THR GLN ASP THR GLN LEU TYR GLU VAL GLY SEQRES 10 B 235 LEU ASP LYS GLN TRP HIS TYR VAL VAL PHE ASN TYR VAL SEQRES 11 B 235 ALA PRO PHE VAL ARG HIS LEU TYR ASN ASN TYR LYS THR SEQRES 12 B 235 LYS ASP ILE ASN LEU ALA PHE VAL VAL LYS TYR ASP MET SEQRES 13 B 235 GLU ARG GLN SER GLU LEU ALA PRO HIS HIS ASP SER SER SEQRES 14 B 235 THR TYR THR LEU ASN ILE ALA LEU ASN GLU TYR GLY LYS SEQRES 15 B 235 GLU TYR THR ALA GLY GLY CYS GLU PHE ILE ARG HIS LYS SEQRES 16 B 235 PHE ILE TRP GLN GLY GLN LYS VAL GLY TYR ALA THR ILE SEQRES 17 B 235 HIS ALA GLY LYS LEU LEU ALA TYR HIS ARG ALA LEU PRO SEQRES 18 B 235 ILE THR SER GLY LYS ARG TYR ILE LEU VAL SER PHE VAL SEQRES 19 B 235 ASN HET FE2 A 901 1 HET FE2 B 901 1 HETNAM FE2 FE (II) ION FORMUL 3 FE2 2(FE 2+) FORMUL 5 HOH *445(H2 O) HELIX 1 AA1 ARG A 692 LEU A 701 1 10 HELIX 2 AA2 HIS A 702 SER A 707 1 6 HELIX 3 AA3 THR A 731 ASN A 746 1 16 HELIX 4 AA4 TYR A 774 GLY A 777 5 4 HELIX 5 AA5 LEU A 778 TYR A 789 1 12 HELIX 6 AA6 TYR A 789 TYR A 798 1 10 HELIX 7 AA7 ARG B 692 LEU B 701 1 10 HELIX 8 AA8 HIS B 702 SER B 707 1 6 HELIX 9 AA9 ASN B 711 PHE B 715 5 5 HELIX 10 AB1 THR B 731 ASN B 746 1 16 HELIX 11 AB2 TYR B 774 GLY B 777 5 4 HELIX 12 AB3 LEU B 778 TYR B 789 1 12 HELIX 13 AB4 TYR B 789 TYR B 798 1 10 SHEET 1 AA1 7 THR A 718 CYS A 721 0 SHEET 2 AA1 7 VAL A 724 PRO A 728 -1 O SER A 726 N THR A 718 SHEET 3 AA1 7 TYR A 865 ALA A 870 -1 O ALA A 866 N PHE A 727 SHEET 4 AA1 7 TYR A 831 ALA A 836 -1 N THR A 832 O HIS A 869 SHEET 5 AA1 7 ARG A 887 VAL A 894 -1 O LEU A 890 N ILE A 835 SHEET 6 AA1 7 ILE A 806 TYR A 814 -1 N TYR A 814 O ARG A 887 SHEET 7 AA1 7 ASP A 770 GLN A 772 -1 N THR A 771 O VAL A 811 SHEET 1 AA2 2 TYR A 844 ALA A 846 0 SHEET 2 AA2 2 ILE A 882 GLY A 885 -1 O THR A 883 N THR A 845 SHEET 1 AA3 3 PHE A 856 TRP A 858 0 SHEET 2 AA3 3 CYS A 849 PHE A 851 -1 N CYS A 849 O TRP A 858 SHEET 3 AA3 3 HIS A 877 ALA A 879 -1 O ARG A 878 N GLU A 850 SHEET 1 AA4 7 THR B 718 CYS B 721 0 SHEET 2 AA4 7 VAL B 724 PRO B 728 -1 O SER B 726 N THR B 718 SHEET 3 AA4 7 TYR B 865 ALA B 870 -1 O ALA B 866 N PHE B 727 SHEET 4 AA4 7 TYR B 831 ALA B 836 -1 N THR B 832 O HIS B 869 SHEET 5 AA4 7 ARG B 887 ASN B 895 -1 O LEU B 890 N ILE B 835 SHEET 6 AA4 7 ASP B 805 TYR B 814 -1 N TYR B 814 O ARG B 887 SHEET 7 AA4 7 ASP B 770 GLN B 772 -1 N THR B 771 O VAL B 811 SHEET 1 AA5 2 TYR B 844 ALA B 846 0 SHEET 2 AA5 2 ILE B 882 GLY B 885 -1 O THR B 883 N THR B 845 SHEET 1 AA6 3 PHE B 856 TRP B 858 0 SHEET 2 AA6 3 CYS B 849 PHE B 851 -1 N CYS B 849 O TRP B 858 SHEET 3 AA6 3 HIS B 877 ALA B 879 -1 O ARG B 878 N GLU B 850 LINK NE2 HIS A 825 FE FE2 A 901 1555 1555 2.46 LINK OD2 ASP A 827 FE FE2 A 901 1555 1555 2.31 LINK NE2 HIS A 877 FE FE2 A 901 1555 1555 2.20 LINK FE FE2 A 901 O HOH A1137 1555 1555 2.49 LINK NE2 HIS B 825 FE FE2 B 901 1555 1555 2.51 LINK OD1 ASP B 827 FE FE2 B 901 1555 1555 2.41 LINK NE2 HIS B 877 FE FE2 B 901 1555 1555 2.48 LINK FE FE2 B 901 O HOH B1128 1555 1555 2.62 LINK FE FE2 B 901 O HOH B1201 1555 1555 2.78 CISPEP 1 LEU A 689 PRO A 690 0 2.22 CISPEP 2 LEU B 689 PRO B 690 0 2.64 SITE 1 AC1 5 HIS A 825 ASP A 827 HIS A 877 HOH A1137 SITE 2 AC1 5 HOH A1169 SITE 1 AC2 5 HIS B 825 ASP B 827 HIS B 877 HOH B1128 SITE 2 AC2 5 HOH B1201 CRYST1 109.460 109.460 84.023 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009136 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011902 0.00000