HEADER LIGASE 06-SEP-17 6AX8 TITLE MYCOBACTERIUM TUBERCULOSIS METHIONYL-TRNA SYNTHETASE IN COMPLEX WITH TITLE 2 METHIONYL-ADENYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE-TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METHIONYL-TRNA SYNTHETASE,METRS; COMPND 5 EC: 6.1.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: METG, METS, RV1007C, MTCI237.24; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SYNTHETASE, LIGASE, LIGASE-AMINOACYL ADENYLATE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.BARROS-ALVAREZ,W.G.J.HOL REVDAT 5 13-MAR-24 6AX8 1 REMARK REVDAT 4 11-DEC-19 6AX8 1 REMARK REVDAT 3 20-FEB-19 6AX8 1 REMARK REVDAT 2 31-OCT-18 6AX8 1 JRNL REVDAT 1 11-APR-18 6AX8 0 JRNL AUTH X.BARROS-ALVAREZ,S.TURLEY,R.M.RANADE,J.R.GILLESPIE, JRNL AUTH 2 N.A.DUSTER,C.L.M.J.VERLINDE,E.FAN,F.S.BUCKNER,W.G.J.HOL JRNL TITL THE CRYSTAL STRUCTURE OF THE DRUG TARGET MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS METHIONYL-TRNA SYNTHETASE IN COMPLEX WITH A JRNL TITL 3 CATALYTIC INTERMEDIATE. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 74 245 2018 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 29633973 JRNL DOI 10.1107/S2053230X18003151 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 98.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.500 REMARK 3 FREE R VALUE TEST SET COUNT : 948 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1205 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3670 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3980 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.17000 REMARK 3 B22 (A**2) : -2.17000 REMARK 3 B33 (A**2) : 7.05000 REMARK 3 B12 (A**2) : -1.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.550 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.324 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.913 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4117 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3794 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5615 ; 1.290 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8660 ; 3.747 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 508 ; 5.633 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 198 ;35.394 ;22.727 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 605 ;15.680 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;15.607 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 617 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4724 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1026 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2035 ; 2.541 ; 5.907 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2036 ; 2.541 ; 5.908 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2543 ; 4.165 ; 8.862 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2543 ; 4.165 ; 8.863 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2082 ; 2.973 ; 6.166 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2083 ; 2.972 ; 6.167 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3073 ; 5.037 ; 9.150 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4611 ; 7.575 ;47.222 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4612 ; 7.574 ;47.232 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6AX8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000229949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17391 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 98.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1-0.2 M AMMONIUM SULFATE, 30-34 % REMARK 280 PEG 8K, 0.1 M SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 98.47900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 56.85688 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 13.05900 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 98.47900 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 56.85688 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.05900 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 98.47900 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 56.85688 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.05900 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 113.71375 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 26.11800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 113.71375 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 26.11800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 113.71375 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 26.11800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 510 REMARK 465 GLN A 511 REMARK 465 PRO A 512 REMARK 465 PRO A 513 REMARK 465 GLN A 514 REMARK 465 PRO A 515 REMARK 465 PRO A 516 REMARK 465 GLU A 517 REMARK 465 GLY A 518 REMARK 465 LYS A 519 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 SD CE REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 VAL A 141 CG1 CG2 REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 ARG A 296 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 298 CG CD OE1 OE2 REMARK 470 MET A 300 CG SD CE REMARK 470 LYS A 302 CG CD CE NZ REMARK 470 VAL A 304 CG1 CG2 REMARK 470 GLU A 315 CG CD OE1 OE2 REMARK 470 GLU A 341 CG CD OE1 OE2 REMARK 470 LYS A 435 CG CD CE NZ REMARK 470 GLU A 437 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 13 32.14 -87.71 REMARK 500 ASN A 85 38.86 70.74 REMARK 500 SER A 87 54.32 -93.48 REMARK 500 ARG A 131 145.01 -171.32 REMARK 500 HIS A 220 71.01 -155.43 REMARK 500 ASP A 243 80.69 -68.11 REMARK 500 ASP A 245 44.47 -107.36 REMARK 500 ARG A 296 -8.54 91.66 REMARK 500 SER A 301 -111.73 59.18 REMARK 500 ASN A 353 -66.39 -102.33 REMARK 500 LEU A 355 -64.53 -92.50 REMARK 500 ALA A 406 58.88 -117.46 REMARK 500 GLN A 429 69.33 30.94 REMARK 500 PHE A 507 71.20 -119.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 938 DISTANCE = 8.05 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ME8 A 801 DBREF 6AX8 A 1 519 UNP P9WFU5 SYM_MYCTU 1 519 SEQRES 1 A 519 MET LYS PRO TYR TYR VAL THR THR ALA ILE ALA TYR PRO SEQRES 2 A 519 ASN ALA ALA PRO HIS VAL GLY HIS ALA TYR GLU TYR ILE SEQRES 3 A 519 ALA THR ASP ALA ILE ALA ARG PHE LYS ARG LEU ASP ARG SEQRES 4 A 519 TYR ASP VAL ARG PHE LEU THR GLY THR ASP GLU HIS GLY SEQRES 5 A 519 LEU LYS VAL ALA GLN ALA ALA ALA ALA ALA GLY VAL PRO SEQRES 6 A 519 THR ALA ALA LEU ALA ARG ARG ASN SER ASP VAL PHE GLN SEQRES 7 A 519 ARG MET GLN GLU ALA LEU ASN ILE SER PHE ASP ARG PHE SEQRES 8 A 519 ILE ARG THR THR ASP ALA ASP HIS HIS GLU ALA SER LYS SEQRES 9 A 519 GLU LEU TRP ARG ARG MET SER ALA ALA GLY ASP ILE TYR SEQRES 10 A 519 LEU ASP ASN TYR SER GLY TRP TYR SER VAL ARG ASP GLU SEQRES 11 A 519 ARG PHE PHE VAL GLU SER GLU THR GLN LEU VAL ASP GLY SEQRES 12 A 519 THR ARG LEU THR VAL GLU THR GLY THR PRO VAL THR TRP SEQRES 13 A 519 THR GLU GLU GLN THR TYR PHE PHE ARG LEU SER ALA TYR SEQRES 14 A 519 THR ASP LYS LEU LEU ALA HIS TYR HIS ALA ASN PRO ASP SEQRES 15 A 519 PHE ILE ALA PRO GLU THR ARG ARG ASN GLU VAL ILE SER SEQRES 16 A 519 PHE VAL SER GLY GLY LEU ASP ASP LEU SER ILE SER ARG SEQRES 17 A 519 THR SER PHE ASP TRP GLY VAL GLN VAL PRO GLU HIS PRO SEQRES 18 A 519 ASP HIS VAL MET TYR VAL TRP VAL ASP ALA LEU THR ASN SEQRES 19 A 519 TYR LEU THR GLY ALA GLY PHE PRO ASP THR ASP SER GLU SEQRES 20 A 519 LEU PHE ARG ARG TYR TRP PRO ALA ASP LEU HIS MET ILE SEQRES 21 A 519 GLY LYS ASP ILE ILE ARG PHE HIS ALA VAL TYR TRP PRO SEQRES 22 A 519 ALA PHE LEU MET SER ALA GLY ILE GLU LEU PRO ARG ARG SEQRES 23 A 519 ILE PHE ALA HIS GLY PHE LEU HIS ASN ARG GLY GLU LYS SEQRES 24 A 519 MET SER LYS SER VAL GLY ASN ILE VAL ASP PRO VAL ALA SEQRES 25 A 519 LEU ALA GLU ALA LEU GLY VAL ASP GLN VAL ARG TYR PHE SEQRES 26 A 519 LEU LEU ARG GLU VAL PRO PHE GLY GLN ASP GLY SER TYR SEQRES 27 A 519 SER ASP GLU ALA ILE VAL THR ARG ILE ASN THR ASP LEU SEQRES 28 A 519 ALA ASN GLU LEU GLY ASN LEU ALA GLN ARG SER LEU SER SEQRES 29 A 519 MET VAL ALA LYS ASN LEU ASP GLY ARG VAL PRO ASN PRO SEQRES 30 A 519 GLY GLU PHE ALA ASP ALA ASP ALA ALA LEU LEU ALA THR SEQRES 31 A 519 ALA ASP GLY LEU LEU GLU ARG VAL ARG GLY HIS PHE ASP SEQRES 32 A 519 ALA GLN ALA MET HIS LEU ALA LEU GLU ALA ILE TRP LEU SEQRES 33 A 519 MET LEU GLY ASP ALA ASN LYS TYR PHE SER VAL GLN GLN SEQRES 34 A 519 PRO TRP VAL LEU ARG LYS SER GLU SER GLU ALA ASP GLN SEQRES 35 A 519 ALA ARG PHE ARG THR THR LEU TYR VAL THR CYS GLU VAL SEQRES 36 A 519 VAL ARG ILE ALA ALA LEU LEU ILE GLN PRO VAL MET PRO SEQRES 37 A 519 GLU SER ALA GLY LYS ILE LEU ASP LEU LEU GLY GLN ALA SEQRES 38 A 519 PRO ASN GLN ARG SER PHE ALA ALA VAL GLY VAL ARG LEU SEQRES 39 A 519 THR PRO GLY THR ALA LEU PRO PRO PRO THR GLY VAL PHE SEQRES 40 A 519 PRO ARG TYR GLN PRO PRO GLN PRO PRO GLU GLY LYS HET ME8 A 801 31 HETNAM ME8 [[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 ME8 OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL] (2S)-2-AZANYL- HETNAM 3 ME8 4-METHYLSULFANYL-BUTANOATE HETSYN ME8 L-METHIONINE-AMP; METHIONYL-ADENYLATE FORMUL 2 ME8 C15 H23 N6 O8 P S FORMUL 3 HOH *38(H2 O) HELIX 1 AA1 HIS A 18 ASP A 38 1 21 HELIX 2 AA2 GLY A 52 GLY A 63 1 12 HELIX 3 AA3 PRO A 65 LEU A 84 1 20 HELIX 4 AA4 ASP A 96 ALA A 113 1 18 HELIX 5 AA5 VAL A 134 SER A 136 5 3 HELIX 6 AA6 LEU A 166 ALA A 168 5 3 HELIX 7 AA7 TYR A 169 ASN A 180 1 12 HELIX 8 AA8 PRO A 186 GLY A 199 1 14 HELIX 9 AA9 TYR A 226 THR A 233 1 8 HELIX 10 AB1 THR A 233 GLY A 238 1 6 HELIX 11 AB2 SER A 246 TRP A 253 1 8 HELIX 12 AB3 ILE A 264 VAL A 270 1 7 HELIX 13 AB4 VAL A 270 ALA A 279 1 10 HELIX 14 AB5 ASP A 309 GLY A 318 1 10 HELIX 15 AB6 GLY A 318 VAL A 330 1 13 HELIX 16 AB7 SER A 339 LEU A 351 1 13 HELIX 17 AB8 LEU A 355 LEU A 370 1 16 HELIX 18 AB9 ALA A 381 GLY A 393 1 13 HELIX 19 AC1 GLY A 393 ALA A 404 1 12 HELIX 20 AC2 ALA A 406 GLN A 429 1 24 HELIX 21 AC3 GLN A 429 ARG A 434 1 6 HELIX 22 AC4 SER A 438 GLN A 464 1 27 HELIX 23 AC5 MET A 467 LEU A 478 1 12 HELIX 24 AC6 ALA A 488 VAL A 492 5 5 SHEET 1 AA1 6 ARG A 90 ARG A 93 0 SHEET 2 AA1 6 ASP A 41 THR A 48 1 N THR A 46 O ILE A 92 SHEET 3 AA1 6 PRO A 3 THR A 8 1 N TYR A 4 O ARG A 43 SHEET 4 AA1 6 LEU A 257 GLY A 261 1 O MET A 259 N THR A 7 SHEET 5 AA1 6 ILE A 287 HIS A 290 1 O HIS A 290 N ILE A 260 SHEET 6 AA1 6 ILE A 184 ALA A 185 1 N ALA A 185 O ILE A 287 SHEET 1 AA2 4 ARG A 131 PHE A 133 0 SHEET 2 AA2 4 ILE A 116 SER A 126 -1 N SER A 126 O ARG A 131 SHEET 3 AA2 4 THR A 155 PHE A 164 -1 O GLU A 159 N TYR A 121 SHEET 4 AA2 4 LEU A 204 SER A 205 -1 O LEU A 204 N PHE A 164 SHEET 1 AA3 2 THR A 138 LEU A 140 0 SHEET 2 AA3 2 ARG A 145 THR A 147 -1 O LEU A 146 N GLN A 139 SHEET 1 AA4 3 SER A 207 ARG A 208 0 SHEET 2 AA4 3 HIS A 220 MET A 225 -1 O VAL A 224 N ARG A 208 SHEET 3 AA4 3 GLN A 216 VAL A 217 -1 N VAL A 217 O HIS A 223 SHEET 1 AA5 2 LEU A 293 HIS A 294 0 SHEET 2 AA5 2 GLY A 336 SER A 337 1 O GLY A 336 N HIS A 294 CISPEP 1 ALA A 185 PRO A 186 0 -3.45 CISPEP 2 PHE A 241 PRO A 242 0 12.07 CISPEP 3 TRP A 253 PRO A 254 0 4.86 SITE 1 AC1 18 ILE A 10 ALA A 11 TYR A 12 HIS A 18 SITE 2 AC1 18 GLY A 20 HIS A 21 GLU A 24 ASP A 49 SITE 3 AC1 18 TRP A 228 GLY A 261 ASP A 263 ILE A 264 SITE 4 AC1 18 HIS A 268 HIS A 290 GLY A 291 PHE A 292 SITE 5 AC1 18 LEU A 293 HOH A 901 CRYST1 196.958 196.958 39.177 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005077 0.002931 0.000000 0.00000 SCALE2 0.000000 0.005863 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025525 0.00000