HEADER TRANSFERASE/TRANSFERASE INHIBITOR 06-SEP-17 6AXD TITLE STRUCTURES OF REV1 UBM2 DOMAIN COMPLEX WITH UBIQUITIN AND WITH THE TITLE 2 FIRST SMALL-MOLECULE THAT INHIBITS THE REV1 UBM2-UBIQUITIN TITLE 3 INTERACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR PROTEIN REV1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 998-1040; COMPND 5 SYNONYM: ALPHA INTEGRIN-BINDING PROTEIN 80,AIBP80,REV1-LIKE TERMINAL COMPND 6 DEOXYCYTIDYL TRANSFERASE; COMPND 7 EC: 2.7.7.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: REV1, REV1L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 7 PPPARG4; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 1182032 KEYWDS UBIQUITIN-BINDING MOTIF, STRUCTURAL PROTEIN, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.FUJII,M.VANAROTTI REVDAT 3 01-MAY-24 6AXD 1 REMARK REVDAT 2 08-AUG-18 6AXD 1 JRNL REVDAT 1 27-JUN-18 6AXD 0 JRNL AUTH M.VANAROTTI,C.R.GRACE,D.J.MILLER,M.L.ACTIS,A.INOUE, JRNL AUTH 2 B.J.EVISON,S.VAITHIYALINGAM,A.P.SINGH,E.T.MCDONALD,N.FUJII JRNL TITL STRUCTURES OF REV1 UBM2 DOMAIN COMPLEX WITH UBIQUITIN AND JRNL TITL 2 WITH A SMALL-MOLECULE THAT INHIBITS THE REV1 UBM2-UBIQUITIN JRNL TITL 3 INTERACTION. JRNL REF J. MOL. BIOL. V. 430 2857 2018 JRNL REFN ESSN 1089-8638 JRNL PMID 29864443 JRNL DOI 10.1016/J.JMB.2018.05.042 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000229849. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.5 REMARK 210 PRESSURE : 1 MBAR REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] REV1 UBM2, REMARK 210 20MM SODIUM PHOSPHATE, 100 MM REMARK 210 NACL, PH 7.0, 90% H2O/10% D2O; REMARK 210 0.5 MM [U-99% 15N] REV1 UBM2, REMARK 210 20MM SODIUM PHOSPHATE, 100 MM REMARK 210 NACL, PH 7.0, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HNCACB; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 LEU A 13 REMARK 465 ASN A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 SER A 17 REMARK 465 LEU A 18 REMARK 465 VAL A 19 REMARK 465 PRO A 20 REMARK 465 ARG A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 ILE A 24 REMARK 465 LYS A 25 REMARK 465 SER A 26 REMARK 465 SER A 27 REMARK 465 GLY A 28 REMARK 465 LEU A 29 REMARK 465 GLU A 30 REMARK 465 SER A 31 REMARK 465 ASN A 32 REMARK 465 SER A 33 REMARK 465 ASP A 34 REMARK 465 ALA A 35 REMARK 465 GLY A 36 REMARK 465 ILE A 37 REMARK 465 ASN A 38 REMARK 465 LEU A 39 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 46 -76.71 -50.77 REMARK 500 1 GLN A 47 -72.90 178.78 REMARK 500 1 VAL A 48 -80.30 65.09 REMARK 500 2 ALA A 41 -35.67 -176.60 REMARK 500 2 ALA A 44 44.86 -178.40 REMARK 500 2 ARG A 71 34.58 -99.11 REMARK 500 3 ALA A 41 -39.12 -178.40 REMARK 500 3 PRO A 43 70.52 -69.71 REMARK 500 3 ALA A 44 20.92 -154.79 REMARK 500 3 GLN A 47 111.60 -164.93 REMARK 500 3 VAL A 48 -69.55 -150.58 REMARK 500 3 ASP A 49 146.16 -177.39 REMARK 500 4 ALA A 41 38.95 -175.10 REMARK 500 4 GLN A 47 110.13 64.45 REMARK 500 5 GLN A 47 48.10 -158.94 REMARK 500 6 ALA A 41 -42.83 -174.74 REMARK 500 6 PRO A 43 60.23 -69.74 REMARK 500 6 SER A 46 -79.08 -115.52 REMARK 500 6 GLN A 47 121.69 176.05 REMARK 500 6 VAL A 48 -72.08 -150.61 REMARK 500 6 ASP A 49 142.02 178.97 REMARK 500 7 LEU A 42 73.87 -116.30 REMARK 500 7 PRO A 43 69.61 -69.77 REMARK 500 7 ALA A 44 -39.84 -134.36 REMARK 500 7 GLN A 47 111.57 -175.34 REMARK 500 7 VAL A 48 -69.52 -150.57 REMARK 500 7 ASP A 49 146.43 -177.09 REMARK 500 8 ALA A 41 -34.72 -177.36 REMARK 500 8 PRO A 43 61.96 -69.76 REMARK 500 8 GLN A 47 -163.14 -70.81 REMARK 500 9 ALA A 41 -34.71 -178.87 REMARK 500 9 PRO A 43 60.47 -69.83 REMARK 500 9 ALA A 44 -165.82 -101.11 REMARK 500 9 SER A 46 29.33 -155.64 REMARK 500 9 VAL A 48 -40.94 -139.62 REMARK 500 10 ALA A 41 49.82 -76.45 REMARK 500 10 PRO A 43 69.98 -69.68 REMARK 500 10 VAL A 48 -69.60 -150.24 REMARK 500 10 ASP A 49 145.46 -174.84 REMARK 500 11 PRO A 43 60.70 -69.76 REMARK 500 11 ALA A 44 -166.32 -110.48 REMARK 500 11 SER A 46 -76.37 -122.43 REMARK 500 11 GLN A 47 64.36 179.04 REMARK 500 11 ASP A 49 91.02 -178.44 REMARK 500 12 SER A 46 -74.48 -51.93 REMARK 500 12 GLN A 47 113.81 -161.66 REMARK 500 12 VAL A 48 -41.14 -140.48 REMARK 500 12 ASP A 49 90.23 -163.07 REMARK 500 13 PRO A 43 60.56 -69.80 REMARK 500 13 ALA A 44 -165.83 -101.92 REMARK 500 REMARK 500 THIS ENTRY HAS 87 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30340 RELATED DB: BMRB REMARK 900 STRUCTURES OF REV1 UBM2 DOMAIN COMPLEX WITH UBIQUITIN AND WITH THE REMARK 900 FIRST SMALL-MOLECULE THAT INHIBITS THE REV1 UBM2-UBIQUITIN REMARK 900 INTERACTION DBREF 6AXD A 30 72 UNP Q9UBZ9 REV1_HUMAN 998 1040 SEQADV 6AXD MET A 1 UNP Q9UBZ9 INITIATING METHIONINE SEQADV 6AXD GLY A 2 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD SER A 3 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD SER A 4 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD HIS A 5 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD HIS A 6 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD HIS A 7 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD HIS A 8 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD HIS A 9 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD HIS A 10 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD HIS A 11 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD HIS A 12 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD LEU A 13 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD ASN A 14 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD GLY A 15 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD SER A 16 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD SER A 17 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD LEU A 18 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD VAL A 19 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD PRO A 20 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD ARG A 21 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD GLY A 22 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD SER A 23 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD ILE A 24 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD LYS A 25 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD SER A 26 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD SER A 27 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD GLY A 28 UNP Q9UBZ9 EXPRESSION TAG SEQADV 6AXD LEU A 29 UNP Q9UBZ9 EXPRESSION TAG SEQRES 1 A 72 MET GLY SER SER HIS HIS HIS HIS HIS HIS HIS HIS LEU SEQRES 2 A 72 ASN GLY SER SER LEU VAL PRO ARG GLY SER ILE LYS SER SEQRES 3 A 72 SER GLY LEU GLU SER ASN SER ASP ALA GLY ILE ASN LEU SEQRES 4 A 72 ILE ALA LEU PRO ALA PHE SER GLN VAL ASP PRO GLU VAL SEQRES 5 A 72 PHE ALA ALA LEU PRO ALA GLU LEU GLN ARG GLU LEU LYS SEQRES 6 A 72 ALA ALA TYR ASP GLN ARG GLN HELIX 1 AA1 LEU A 42 SER A 46 5 5 HELIX 2 AA2 ASP A 49 LEU A 56 1 8 HELIX 3 AA3 PRO A 57 ARG A 71 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1