HEADER VIRAL PROTEIN 07-SEP-17 6AXR TITLE STRUCTURE OF THE P122A MUTANT OF THE HIV-1 CAPSID PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 133-363; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: GAG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS HIV-1 CAPSID PROTEIN, HEXAMER, P122A MUTANT, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.T.GRES,K.A.KIRBY,S.G.SARAFIANOS REVDAT 7 04-OCT-23 6AXR 1 REMARK REVDAT 6 11-DEC-19 6AXR 1 REMARK REVDAT 5 20-FEB-19 6AXR 1 REMARK REVDAT 4 14-NOV-18 6AXR 1 JRNL REVDAT 3 31-OCT-18 6AXR 1 JRNL REVDAT 2 24-OCT-18 6AXR 1 JRNL REVDAT 1 12-SEP-18 6AXR 0 JRNL AUTH M.NOVIKOVA,L.J.ADAMS,J.FONTANA,A.T.GRES,M.BALASUBRAMANIAM, JRNL AUTH 2 D.C.WINKLER,S.B.KUDCHODKAR,F.SOHEILIAN,S.G.SARAFIANOS, JRNL AUTH 3 A.C.STEVEN,E.O.FREED JRNL TITL IDENTIFICATION OF A STRUCTURAL ELEMENT IN HIV-1 GAG REQUIRED JRNL TITL 2 FOR VIRUS PARTICLE ASSEMBLY AND MATURATION. JRNL REF MBIO V. 9 2018 JRNL REFN ESSN 2150-7511 JRNL PMID 30327442 JRNL DOI 10.1128/MBIO.01567-18 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1-2575_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12730 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.530 REMARK 3 FREE R VALUE TEST SET COUNT : 704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9170 - 3.9327 1.00 2439 164 0.1951 0.2296 REMARK 3 2 3.9327 - 3.1217 1.00 2421 120 0.2530 0.2908 REMARK 3 3 3.1217 - 2.7272 1.00 2400 120 0.3241 0.3582 REMARK 3 4 2.7272 - 2.4778 1.00 2360 167 0.3160 0.3322 REMARK 3 5 2.4778 - 2.3002 1.00 2406 133 0.3281 0.3467 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1719 REMARK 3 ANGLE : 0.508 2336 REMARK 3 CHIRALITY : 0.039 263 REMARK 3 PLANARITY : 0.004 303 REMARK 3 DIHEDRAL : 9.424 1051 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8018 -12.4878 14.5997 REMARK 3 T TENSOR REMARK 3 T11: 0.9225 T22: 0.8333 REMARK 3 T33: 1.0207 T12: 0.1703 REMARK 3 T13: -0.0341 T23: 0.0790 REMARK 3 L TENSOR REMARK 3 L11: -0.0237 L22: -0.1581 REMARK 3 L33: -0.0692 L12: 0.1185 REMARK 3 L13: 0.1707 L23: -0.0911 REMARK 3 S TENSOR REMARK 3 S11: 0.8209 S12: 0.0358 S13: -0.2045 REMARK 3 S21: 0.5191 S22: 1.1313 S23: 1.2549 REMARK 3 S31: -0.1367 S32: 0.2058 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6556 -17.0861 -3.6022 REMARK 3 T TENSOR REMARK 3 T11: 0.5124 T22: 0.5484 REMARK 3 T33: 0.9771 T12: 0.0042 REMARK 3 T13: -0.0308 T23: 0.1010 REMARK 3 L TENSOR REMARK 3 L11: 0.2859 L22: 0.3399 REMARK 3 L33: 0.9301 L12: 0.5816 REMARK 3 L13: 0.0273 L23: 0.2928 REMARK 3 S TENSOR REMARK 3 S11: -0.1380 S12: 0.1865 S13: 0.8236 REMARK 3 S21: -0.3293 S22: -0.2073 S23: -0.3378 REMARK 3 S31: -0.0992 S32: 0.2210 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2064 -21.0184 3.4166 REMARK 3 T TENSOR REMARK 3 T11: 0.5057 T22: 0.4477 REMARK 3 T33: 0.5430 T12: 0.0229 REMARK 3 T13: -0.0978 T23: 0.0412 REMARK 3 L TENSOR REMARK 3 L11: 0.1679 L22: 0.8304 REMARK 3 L33: 0.3381 L12: -0.4035 REMARK 3 L13: 0.2769 L23: -0.5221 REMARK 3 S TENSOR REMARK 3 S11: -0.3568 S12: 0.1370 S13: 0.4310 REMARK 3 S21: 0.1634 S22: 0.1464 S23: -0.0507 REMARK 3 S31: 0.1709 S32: 0.1916 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8236 -36.0462 3.9791 REMARK 3 T TENSOR REMARK 3 T11: 0.6759 T22: 0.3987 REMARK 3 T33: 0.5059 T12: 0.0487 REMARK 3 T13: 0.1631 T23: 0.0582 REMARK 3 L TENSOR REMARK 3 L11: 0.2352 L22: 0.2394 REMARK 3 L33: 0.4546 L12: -0.6113 REMARK 3 L13: -0.5210 L23: 0.1556 REMARK 3 S TENSOR REMARK 3 S11: -0.6301 S12: 0.2455 S13: 0.1889 REMARK 3 S21: -0.1579 S22: 0.0494 S23: -0.2777 REMARK 3 S31: 1.3958 S32: -0.2131 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7390 -34.1885 22.9608 REMARK 3 T TENSOR REMARK 3 T11: 0.8445 T22: 0.6523 REMARK 3 T33: 0.5709 T12: 0.0007 REMARK 3 T13: 0.0881 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: -0.2030 L22: 0.1825 REMARK 3 L33: 0.0601 L12: -0.0886 REMARK 3 L13: -0.2742 L23: -0.1577 REMARK 3 S TENSOR REMARK 3 S11: 0.1828 S12: -0.3806 S13: -0.0101 REMARK 3 S21: 0.0610 S22: -0.4299 S23: -0.0567 REMARK 3 S31: -0.0324 S32: 0.1474 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6324 -27.4925 10.3116 REMARK 3 T TENSOR REMARK 3 T11: 0.5026 T22: 0.4936 REMARK 3 T33: 0.4810 T12: 0.0545 REMARK 3 T13: -0.0810 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.5262 L22: 2.8932 REMARK 3 L33: 1.3553 L12: 0.6103 REMARK 3 L13: -0.1224 L23: -2.3798 REMARK 3 S TENSOR REMARK 3 S11: -0.2913 S12: 0.0123 S13: 0.2525 REMARK 3 S21: 0.6671 S22: -0.2541 S23: -0.4091 REMARK 3 S31: -0.3515 S32: 0.1043 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8761 -29.4359 -19.6125 REMARK 3 T TENSOR REMARK 3 T11: 0.8427 T22: 0.7795 REMARK 3 T33: 0.5891 T12: 0.0019 REMARK 3 T13: 0.0969 T23: 0.0739 REMARK 3 L TENSOR REMARK 3 L11: -0.0875 L22: -0.1618 REMARK 3 L33: 0.6026 L12: -0.2719 REMARK 3 L13: -0.1843 L23: 0.1152 REMARK 3 S TENSOR REMARK 3 S11: 0.0973 S12: 1.0333 S13: 0.2611 REMARK 3 S21: -0.2041 S22: 0.3207 S23: 0.1432 REMARK 3 S31: 0.2964 S32: -0.6780 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7736 -25.3484 -12.6665 REMARK 3 T TENSOR REMARK 3 T11: 0.6969 T22: 0.4580 REMARK 3 T33: 0.5062 T12: 0.0647 REMARK 3 T13: 0.0904 T23: 0.0978 REMARK 3 L TENSOR REMARK 3 L11: 0.3577 L22: 0.0657 REMARK 3 L33: 0.6314 L12: -0.1941 REMARK 3 L13: 0.2541 L23: 0.3145 REMARK 3 S TENSOR REMARK 3 S11: 0.0638 S12: 0.2007 S13: 0.2252 REMARK 3 S21: -0.4180 S22: -0.5269 S23: 0.1907 REMARK 3 S31: 0.2205 S32: -0.0354 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2801 -34.6658 -6.4998 REMARK 3 T TENSOR REMARK 3 T11: 0.8431 T22: 0.6832 REMARK 3 T33: 0.6882 T12: 0.2836 REMARK 3 T13: 0.1395 T23: 0.0961 REMARK 3 L TENSOR REMARK 3 L11: 0.1694 L22: 1.1148 REMARK 3 L33: 0.3693 L12: 0.9558 REMARK 3 L13: 0.2855 L23: 0.0423 REMARK 3 S TENSOR REMARK 3 S11: -0.3717 S12: 0.1059 S13: -0.1206 REMARK 3 S21: 0.2915 S22: 0.3738 S23: -0.4281 REMARK 3 S31: 0.3064 S32: -0.1963 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9302 -25.5467 -14.5583 REMARK 3 T TENSOR REMARK 3 T11: 0.7176 T22: 0.8799 REMARK 3 T33: 0.6292 T12: 0.2303 REMARK 3 T13: 0.0821 T23: 0.1297 REMARK 3 L TENSOR REMARK 3 L11: 0.6143 L22: 0.3725 REMARK 3 L33: 0.3362 L12: 0.2553 REMARK 3 L13: -0.7903 L23: -0.0465 REMARK 3 S TENSOR REMARK 3 S11: -0.5783 S12: 0.1791 S13: 0.1222 REMARK 3 S21: -0.5802 S22: -0.0351 S23: 0.2033 REMARK 3 S31: -0.0303 S32: 0.9225 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6AXR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000229971. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033203 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS 0.5.32 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12735 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.63300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: 4XFX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, NAI, SODIUM CACODYLATE, REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -424.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 5 REMARK 465 LEU A 6 REMARK 465 GLN A 7 REMARK 465 GLY A 8 REMARK 465 GLN A 9 REMARK 465 GLY A 222 REMARK 465 GLY A 223 REMARK 465 PRO A 224 REMARK 465 GLY A 225 REMARK 465 HIS A 226 REMARK 465 LYS A 227 REMARK 465 ALA A 228 REMARK 465 ARG A 229 REMARK 465 VAL A 230 REMARK 465 LEU A 231 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 10 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 31 -112.41 52.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 313 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XFX RELATED DB: PDB REMARK 900 STRUCTURE OF THE NATIVE FULL-LENGTH HIV-1 CAPSID PROTEIN DBREF 6AXR A 1 231 UNP B6DRA0 B6DRA0_9HIV1 133 363 SEQADV 6AXR ALA A 122 UNP B6DRA0 PRO 254 ENGINEERED MUTATION SEQRES 1 A 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 A 231 ALA ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 A 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 A 231 PHE SER ALA LEU SER GLU GLY ALA THR PRO GLN ASP LEU SEQRES 5 A 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 A 231 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 A 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 A 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 A 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 A 231 MET THR HIS ASN ALA PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 A 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 A 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 A 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 A 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 A 231 ASN TRP MET THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 A 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 A 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 A 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU HET IOD A 301 1 HET IOD A 302 1 HET IOD A 303 1 HET IOD A 304 1 HET IOD A 305 1 HET IOD A 306 1 HET IOD A 307 1 HET IOD A 308 1 HET CL A 309 1 HET CL A 310 1 HET CL A 311 1 HET CL A 312 1 HET CL A 313 1 HETNAM IOD IODIDE ION HETNAM CL CHLORIDE ION FORMUL 2 IOD 8(I 1-) FORMUL 10 CL 5(CL 1-) FORMUL 15 HOH *52(H2 O) HELIX 1 AA1 SER A 16 ALA A 31 1 16 HELIX 2 AA2 GLU A 35 SER A 44 1 10 HELIX 3 AA3 THR A 48 THR A 58 1 11 HELIX 4 AA4 HIS A 62 HIS A 84 1 23 HELIX 5 AA5 ARG A 100 ALA A 105 1 6 HELIX 6 AA6 THR A 110 HIS A 120 1 11 HELIX 7 AA7 PRO A 125 TYR A 145 1 21 HELIX 8 AA8 SER A 149 ILE A 153 5 5 HELIX 9 AA9 PRO A 160 GLN A 176 1 17 HELIX 10 AB1 SER A 178 ASN A 193 1 16 HELIX 11 AB2 ASN A 195 GLY A 206 1 12 HELIX 12 AB3 THR A 210 CYS A 218 1 9 SHEET 1 AA1 2 ILE A 2 VAL A 3 0 SHEET 2 AA1 2 VAL A 11 HIS A 12 -1 O VAL A 11 N VAL A 3 SITE 1 AC1 2 GLN A 95 LYS A 158 SITE 1 AC2 2 ARG A 162 GLN A 219 SITE 1 AC3 1 ARG A 18 SITE 1 AC4 1 ARG A 18 SITE 1 AC5 2 ASN A 57 ARG A 173 SITE 1 AC6 1 GLY A 60 SITE 1 AC7 3 ILE A 153 ARG A 167 HOH A 438 SITE 1 AC8 2 ALA A 31 PHE A 32 SITE 1 AC9 2 ASN A 21 MET A 39 CRYST1 92.728 92.728 57.791 90.00 90.00 120.00 P 6 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010784 0.006226 0.000000 0.00000 SCALE2 0.000000 0.012453 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017304 0.00000