HEADER IMMUNE SYSTEM 15-SEP-17 6B0W TITLE CRYSTAL STRUCTURE OF THE ANTI-CIRCUMSPOROZOITE PROTEIN 1710 ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1710 ANTIBODY, LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 1710 ANTIBODY, HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS MALARIA, CIRCUMSPOROZOITE PROTEIN, ALPHA THROMBOSPONDIN TYPE-1 KEYWDS 2 REPEAT, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.W.SCALLY,R.MURUGAN,A.BOSCH,G.TRILLER,H.WARDEMANN,J.P.JULIEN REVDAT 4 04-OCT-23 6B0W 1 REMARK REVDAT 3 10-JAN-18 6B0W 1 JRNL REVDAT 2 06-DEC-17 6B0W 1 JRNL REVDAT 1 08-NOV-17 6B0W 0 JRNL AUTH S.W.SCALLY,R.MURUGAN,A.BOSCH,G.TRILLER,G.COSTA,B.MORDMULLER, JRNL AUTH 2 P.G.KREMSNER,B.K.L.SIM,S.L.HOFFMAN,E.A.LEVASHINA, JRNL AUTH 3 H.WARDEMANN,J.P.JULIEN JRNL TITL RARE PFCSP C-TERMINAL ANTIBODIES INDUCED BY LIVE SPOROZOITE JRNL TITL 2 VACCINATION ARE INEFFECTIVE AGAINST MALARIA INFECTION. JRNL REF J. EXP. MED. V. 215 63 2018 JRNL REFN ESSN 1540-9538 JRNL PMID 29167197 JRNL DOI 10.1084/JEM.20170869 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 40542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4372 - 5.6965 1.00 2718 146 0.1908 0.1969 REMARK 3 2 5.6965 - 4.5228 1.00 2707 139 0.1596 0.1884 REMARK 3 3 4.5228 - 3.9514 1.00 2697 142 0.1454 0.1863 REMARK 3 4 3.9514 - 3.5903 1.00 2716 140 0.1618 0.2261 REMARK 3 5 3.5903 - 3.3331 1.00 2693 145 0.1451 0.1685 REMARK 3 6 3.3331 - 3.1366 1.00 2717 143 0.1609 0.1705 REMARK 3 7 3.1366 - 2.9796 1.00 2732 147 0.1597 0.1922 REMARK 3 8 2.9796 - 2.8499 1.00 2689 138 0.1662 0.2025 REMARK 3 9 2.8499 - 2.7402 1.00 2691 140 0.1731 0.2266 REMARK 3 10 2.7402 - 2.6456 1.00 2710 145 0.1901 0.2474 REMARK 3 11 2.6456 - 2.5629 1.00 2693 134 0.1937 0.2433 REMARK 3 12 2.5629 - 2.4897 1.00 2741 143 0.1954 0.2319 REMARK 3 13 2.4897 - 2.4241 1.00 2720 143 0.2033 0.2327 REMARK 3 14 2.4241 - 2.3650 1.00 2688 135 0.2070 0.2688 REMARK 3 15 2.3650 - 2.3112 1.00 2705 142 0.2146 0.2464 REMARK 3 16 2.3112 - 2.2620 1.00 2694 139 0.2128 0.2743 REMARK 3 17 2.2620 - 2.2168 1.00 2726 139 0.2070 0.2281 REMARK 3 18 2.2168 - 2.1750 1.00 2710 138 0.2191 0.2565 REMARK 3 19 2.1750 - 2.1361 0.99 2695 143 0.2141 0.2307 REMARK 3 20 2.1361 - 2.0999 1.00 2689 139 0.2236 0.2897 REMARK 3 21 2.0999 - 2.0660 0.99 2716 141 0.2354 0.2691 REMARK 3 22 2.0660 - 2.0342 1.00 2709 141 0.2448 0.2925 REMARK 3 23 2.0342 - 2.0043 0.99 2695 142 0.2583 0.3087 REMARK 3 24 2.0043 - 1.9761 1.00 2688 144 0.2714 0.3077 REMARK 3 25 1.9761 - 1.9494 0.99 2723 141 0.2812 0.3355 REMARK 3 26 1.9494 - 1.9241 1.00 2663 133 0.2971 0.3280 REMARK 3 27 1.9241 - 1.9000 0.99 2710 134 0.3110 0.3082 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3382 REMARK 3 ANGLE : 0.787 4612 REMARK 3 CHIRALITY : 0.053 517 REMARK 3 PLANARITY : 0.005 585 REMARK 3 DIHEDRAL : 13.774 2013 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 2 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6879 -22.5867 9.3314 REMARK 3 T TENSOR REMARK 3 T11: 0.2118 T22: 0.1962 REMARK 3 T33: 0.1954 T12: 0.0363 REMARK 3 T13: 0.0400 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 3.5549 L22: 2.2626 REMARK 3 L33: 4.5753 L12: 0.7717 REMARK 3 L13: 0.0124 L23: 0.7612 REMARK 3 S TENSOR REMARK 3 S11: -0.0364 S12: -0.0771 S13: -0.2221 REMARK 3 S21: 0.2047 S22: 0.0468 S23: -0.0159 REMARK 3 S31: 0.1234 S32: 0.1563 S33: 0.0095 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 93 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5318 -12.4334 22.3562 REMARK 3 T TENSOR REMARK 3 T11: 0.2238 T22: 0.1412 REMARK 3 T33: 0.1525 T12: -0.0161 REMARK 3 T13: -0.0231 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.9192 L22: 0.6565 REMARK 3 L33: 0.6321 L12: -0.5672 REMARK 3 L13: -1.0599 L23: 0.5326 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: -0.0352 S13: -0.0392 REMARK 3 S21: -0.0059 S22: -0.0376 S23: -0.0100 REMARK 3 S31: -0.0659 S32: 0.0297 S33: 0.0034 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 173 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.5449 -11.5149 20.9300 REMARK 3 T TENSOR REMARK 3 T11: 0.2208 T22: 0.1904 REMARK 3 T33: 0.1225 T12: -0.0191 REMARK 3 T13: 0.0110 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 7.3868 L22: 5.6015 REMARK 3 L33: 3.4116 L12: -4.6026 REMARK 3 L13: 3.0131 L23: -2.8101 REMARK 3 S TENSOR REMARK 3 S11: 0.1261 S12: 0.0267 S13: -0.1940 REMARK 3 S21: -0.2712 S22: -0.1066 S23: 0.3634 REMARK 3 S31: 0.0450 S32: -0.2002 S33: 0.0174 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8760 -0.6601 3.3107 REMARK 3 T TENSOR REMARK 3 T11: 0.2886 T22: 0.1719 REMARK 3 T33: 0.2085 T12: 0.0326 REMARK 3 T13: 0.0262 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 4.9056 L22: 1.9232 REMARK 3 L33: 4.1113 L12: -0.4678 REMARK 3 L13: -2.4081 L23: 0.8524 REMARK 3 S TENSOR REMARK 3 S11: 0.1365 S12: 0.1440 S13: 0.4761 REMARK 3 S21: 0.0200 S22: 0.1015 S23: 0.0311 REMARK 3 S31: -0.4304 S32: -0.1291 S33: -0.2268 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 67 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3254 -1.5847 3.9436 REMARK 3 T TENSOR REMARK 3 T11: 0.2327 T22: 0.1897 REMARK 3 T33: 0.1708 T12: 0.0026 REMARK 3 T13: -0.0214 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 5.5505 L22: 4.6246 REMARK 3 L33: 4.2208 L12: -1.8260 REMARK 3 L13: -2.0545 L23: -0.7968 REMARK 3 S TENSOR REMARK 3 S11: 0.0839 S12: 0.0561 S13: 0.3467 REMARK 3 S21: -0.0039 S22: 0.1161 S23: 0.0872 REMARK 3 S31: -0.1501 S32: -0.0992 S33: -0.1968 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 112 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.3688 -1.0570 33.5600 REMARK 3 T TENSOR REMARK 3 T11: 0.3540 T22: 0.1546 REMARK 3 T33: 0.1871 T12: 0.0217 REMARK 3 T13: -0.0096 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 5.5537 L22: 3.8918 REMARK 3 L33: 5.6263 L12: -0.2186 REMARK 3 L13: -0.6405 L23: -0.0091 REMARK 3 S TENSOR REMARK 3 S11: 0.0689 S12: 0.0465 S13: 0.0172 REMARK 3 S21: -0.2888 S22: 0.0617 S23: -0.2799 REMARK 3 S31: 0.8116 S32: -0.1051 S33: -0.1936 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 158 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9643 -1.6210 37.5089 REMARK 3 T TENSOR REMARK 3 T11: 0.3222 T22: 0.1895 REMARK 3 T33: 0.1670 T12: 0.0054 REMARK 3 T13: -0.0219 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 3.9023 L22: 4.7263 REMARK 3 L33: 4.4773 L12: -0.2806 REMARK 3 L13: -1.0914 L23: 0.7053 REMARK 3 S TENSOR REMARK 3 S11: 0.0735 S12: -0.3820 S13: 0.0420 REMARK 3 S21: 0.4255 S22: 0.0912 S23: -0.0327 REMARK 3 S31: 0.3992 S32: -0.0046 S33: -0.1730 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B0W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000230109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XPREP REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40776 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.424 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4GSD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17 % (W/V) PEG 400, 15 % (V/V) REMARK 280 GLYCEROL, 8.5 % (V/V) ISOPROPANOL AND 85 MM HEPES PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.53150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.01350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.36200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.01350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.53150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.36200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER L 0 REMARK 465 ALA L 1 REMARK 465 CYS L 212 REMARK 465 SER L 213 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU L 211 CG CD OE1 OE2 REMARK 470 GLN H 5 CG CD OE1 NE2 REMARK 470 LYS H 131 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 92 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP L 51 -52.02 71.62 REMARK 500 SER L 94 -11.67 69.14 REMARK 500 ASP L 152 -115.05 53.42 REMARK 500 SER H 132 -145.16 -132.74 REMARK 500 ASP H 144 64.74 63.20 REMARK 500 SER H 156 19.29 59.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA H 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA H 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA H 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6B0S RELATED DB: PDB DBREF 6B0W L 0 213 PDB 6B0W 6B0W 0 213 DBREF 6B0W H 1 216 PDB 6B0W 6B0W 1 216 SEQRES 1 L 213 SER ALA TYR GLU LEU THR GLN PRO PRO SER VAL SER VAL SEQRES 2 L 213 SER PRO GLY GLN THR ALA SER ILE THR CYS SER GLY ASP SEQRES 3 L 213 LYS LEU GLY ASP LYS TYR ALA CYS TRP TYR GLN GLN LYS SEQRES 4 L 213 PRO GLY GLN SER PRO VAL VAL VAL ILE TYR GLN ASP THR SEQRES 5 L 213 LYS ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER SEQRES 6 L 213 ASN SER GLY ASN THR ALA THR LEU THR ILE SER GLY THR SEQRES 7 L 213 GLN ALA MET ASP GLU ALA ASP TYR TYR CYS GLN ALA TRP SEQRES 8 L 213 ASP SER SER THR VAL VAL PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 213 THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL THR SEQRES 10 L 213 LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN LYS SEQRES 11 L 213 ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO GLY SEQRES 12 L 213 ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO VAL SEQRES 13 L 213 LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SER SEQRES 14 L 213 ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU THR SEQRES 15 L 213 PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS GLN SEQRES 16 L 213 VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL ALA SEQRES 17 L 213 PRO THR GLU CYS SER SEQRES 1 H 226 GLU VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 226 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 226 PHE THR PHE SER SER TYR SER MET ASN TRP VAL ARG GLN SEQRES 4 H 226 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER SER ILE THR SEQRES 5 H 226 SER SER SER SER TYR ILE TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 226 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SER SEQRES 7 H 226 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 226 ALA VAL TYR TYR CYS ALA ARG ASP PRO GLY ILE ALA ALA SEQRES 9 H 226 ALA ASP ASN HIS TRP PHE ASP PRO TRP GLY GLN GLY THR SEQRES 10 H 226 LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER SEQRES 11 H 226 VAL PHE PRO LEU ALA PRO SER SER SER SER LYS SER GLY SEQRES 12 H 226 GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE SEQRES 13 H 226 PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU SEQRES 14 H 226 THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 226 SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SEQRES 16 H 226 SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL SEQRES 17 H 226 ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL SEQRES 18 H 226 GLU PRO LYS SER CYS HET IPA L 301 4 HET GOL L 302 6 HET GOL L 303 6 HET GOL L 304 6 HET GOL L 305 6 HET IPA H 301 4 HET IPA H 302 4 HET IPA H 303 4 HET IPA H 304 4 HET IPA H 305 4 HET GOL H 306 6 HET GOL H 307 6 HETNAM IPA ISOPROPYL ALCOHOL HETNAM GOL GLYCEROL HETSYN IPA 2-PROPANOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 IPA 6(C3 H8 O) FORMUL 4 GOL 6(C3 H8 O3) FORMUL 15 HOH *240(H2 O) HELIX 1 AA1 LYS L 27 LYS L 31 5 5 HELIX 2 AA2 GLN L 79 GLU L 83 5 5 HELIX 3 AA3 SER L 122 ALA L 128 1 7 HELIX 4 AA4 THR L 182 SER L 188 1 7 HELIX 5 AA5 THR H 28 TYR H 32 5 5 HELIX 6 AA6 ASP H 61 LYS H 64 5 4 HELIX 7 AA7 ASN H 73 LYS H 75 5 3 HELIX 8 AA8 ARG H 83 THR H 87 5 5 HELIX 9 AA9 SER H 156 ALA H 158 5 3 HELIX 10 AB1 SER H 187 THR H 191 5 5 HELIX 11 AB2 LYS H 201 ASN H 204 5 4 SHEET 1 AA1 5 SER L 9 VAL L 13 0 SHEET 2 AA1 5 THR L 102 VAL L 106 1 O THR L 105 N VAL L 11 SHEET 3 AA1 5 ALA L 84 ASP L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 AA1 5 CYS L 34 GLN L 38 -1 N GLN L 38 O ASP L 85 SHEET 5 AA1 5 VAL L 45 ILE L 48 -1 O ILE L 48 N TRP L 35 SHEET 1 AA2 4 SER L 9 VAL L 13 0 SHEET 2 AA2 4 THR L 102 VAL L 106 1 O THR L 105 N VAL L 11 SHEET 3 AA2 4 ALA L 84 ASP L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 AA2 4 THR L 95 PHE L 98 -1 O VAL L 97 N ALA L 90 SHEET 1 AA3 3 ALA L 19 SER L 24 0 SHEET 2 AA3 3 THR L 70 ILE L 75 -1 O ALA L 71 N CYS L 23 SHEET 3 AA3 3 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA4 4 SER L 115 PHE L 119 0 SHEET 2 AA4 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 AA4 4 TYR L 173 LEU L 181 -1 O LEU L 181 N ALA L 131 SHEET 4 AA4 4 VAL L 160 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 AA5 4 SER L 115 PHE L 119 0 SHEET 2 AA5 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 AA5 4 TYR L 173 LEU L 181 -1 O LEU L 181 N ALA L 131 SHEET 4 AA5 4 SER L 166 LYS L 167 -1 N SER L 166 O ALA L 174 SHEET 1 AA6 4 SER L 154 PRO L 155 0 SHEET 2 AA6 4 THR L 146 ALA L 151 -1 N ALA L 151 O SER L 154 SHEET 3 AA6 4 TYR L 192 HIS L 198 -1 O GLN L 195 N ALA L 148 SHEET 4 AA6 4 SER L 201 VAL L 207 -1 O VAL L 203 N VAL L 196 SHEET 1 AA7 4 GLN H 3 SER H 7 0 SHEET 2 AA7 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA7 4 SER H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA7 4 PHE H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 AA8 6 GLY H 10 VAL H 12 0 SHEET 2 AA8 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA8 6 ALA H 88 ASP H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA8 6 SER H 33 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA8 6 LEU H 45 ILE H 51 -1 O VAL H 48 N TRP H 36 SHEET 6 AA8 6 ILE H 57 TYR H 59 -1 O TYR H 58 N SER H 50 SHEET 1 AA9 4 SER H 120 SER H 127 0 SHEET 2 AA9 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA9 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA9 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AB1 4 SER H 120 SER H 127 0 SHEET 2 AB1 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AB1 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AB1 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AB2 3 THR H 151 TRP H 154 0 SHEET 2 AB2 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AB2 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 2 CYS L 135 CYS L 194 1555 1555 2.05 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 4 CYS H 140 CYS H 196 1555 1555 2.05 CISPEP 1 TYR L 141 PRO L 142 0 1.53 CISPEP 2 ASP H 101 PRO H 102 0 -3.75 CISPEP 3 PHE H 146 PRO H 147 0 -7.66 CISPEP 4 GLU H 148 PRO H 149 0 -1.89 SITE 1 AC1 3 LYS H 206 ASP L 152 GLU L 204 SITE 1 AC2 6 ARG H 210 GLU L 124 HIS L 198 GLU L 199 SITE 2 AC2 6 SER L 201 HOH L 405 SITE 1 AC3 4 GLN L 37 LYS L 39 PRO L 59 HOH L 401 SITE 1 AC4 6 GOL H 306 HOH H 410 TYR L 2 GLU L 3 SITE 2 AC4 6 GLY L 25 ASP L 26 SITE 1 AC5 6 VAL L 156 ALA L 158 LEU L 181 GLN L 185 SITE 2 AC5 6 TYR L 192 HOH L 404 SITE 1 AC6 4 SER H 120 VAL H 121 LYS H 209 PRO L 114 SITE 1 AC7 3 SER H 54 ASN H 155 ALA H 158 SITE 1 AC8 3 GLU H 148 VAL H 150 ALA H 168 SITE 1 AC9 6 ASP H 61 SER H 62 VAL H 63 LYS H 64 SITE 2 AC9 6 ARG H 66 ARG H 83 SITE 1 AD1 6 SER H 25 GLY H 26 PHE H 27 ASN H 76 SITE 2 AD1 6 GLY L 68 ASN L 69 SITE 1 AD2 5 TRP H 100E ASP H 101 GLU L 3 TYR L 49 SITE 2 AD2 5 GOL L 304 SITE 1 AD3 5 TYR H 59 LYS H 64 GLY H 65 PHE H 67 SITE 2 AD3 5 THR H 68 CRYST1 61.063 66.724 124.027 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016377 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014987 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008063 0.00000