HEADER SIGNALING PROTEIN 15-SEP-17 6B0Y TITLE CRYSTAL STRUCTURE OF SMALL MOLECULE ARS-917 COVALENTLY BOUND TO K-RAS TITLE 2 G12C COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-169; COMPND 5 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: GTPASE DOMAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PJEXPRESS411 KEYWDS SMALL GTPASE DOMAIN, COVALENT INHIBITOR BOUND, SWITCH II POCKET, GDP KEYWDS 2 BOUND, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.HANSEN,U.PETERS,A.BABBAR,Y.CHEN,J.FENG,M.R.JANES,L.-S.LI,P.REN, AUTHOR 2 Y.LIU,P.P.ZARRINKAR REVDAT 5 30-OCT-24 6B0Y 1 REMARK REVDAT 4 04-OCT-23 6B0Y 1 LINK REVDAT 3 07-NOV-18 6B0Y 1 JRNL REVDAT 2 30-MAY-18 6B0Y 1 JRNL REVDAT 1 16-MAY-18 6B0Y 0 JRNL AUTH R.HANSEN,U.PETERS,A.BABBAR,Y.CHEN,J.FENG,M.R.JANES,L.S.LI, JRNL AUTH 2 P.REN,Y.LIU,P.P.ZARRINKAR JRNL TITL THE REACTIVITY-DRIVEN BIOCHEMICAL MECHANISM OF COVALENT JRNL TITL 2 KRASG12CINHIBITORS. JRNL REF NAT. STRUCT. MOL. BIOL. V. 25 454 2018 JRNL REFN ESSN 1545-9985 JRNL PMID 29760531 JRNL DOI 10.1038/S41594-018-0061-5 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 49052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2501 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3531 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 179 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2642 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 134 REMARK 3 SOLVENT ATOMS : 329 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : -0.24000 REMARK 3 B13 (A**2) : 0.05000 REMARK 3 B23 (A**2) : 0.72000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.831 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2946 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2750 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4010 ; 2.207 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6334 ; 2.175 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 363 ; 5.999 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;37.079 ;24.191 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 507 ;14.682 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;15.341 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 444 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3327 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 670 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 168 REMARK 3 RESIDUE RANGE : A 200 A 220 REMARK 3 ORIGIN FOR THE GROUP (A): -18.399 9.086 7.136 REMARK 3 T TENSOR REMARK 3 T11: 0.0101 T22: 0.0270 REMARK 3 T33: 0.0019 T12: 0.0049 REMARK 3 T13: 0.0013 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.6198 L22: 0.2126 REMARK 3 L33: 0.4766 L12: 0.0848 REMARK 3 L13: 0.1864 L23: -0.0546 REMARK 3 S TENSOR REMARK 3 S11: -0.0382 S12: 0.0529 S13: 0.0028 REMARK 3 S21: 0.0153 S22: 0.0136 S23: -0.0083 REMARK 3 S31: 0.0003 S32: 0.0037 S33: 0.0246 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 168 REMARK 3 RESIDUE RANGE : B 200 B 220 REMARK 3 ORIGIN FOR THE GROUP (A): -2.343 -3.071 35.467 REMARK 3 T TENSOR REMARK 3 T11: 0.0032 T22: 0.0444 REMARK 3 T33: 0.0054 T12: 0.0018 REMARK 3 T13: 0.0001 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.2225 L22: 0.3494 REMARK 3 L33: 0.4169 L12: 0.0396 REMARK 3 L13: -0.0809 L23: -0.1374 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: -0.0197 S13: 0.0034 REMARK 3 S21: -0.0001 S22: -0.0040 S23: -0.0089 REMARK 3 S31: 0.0156 S32: -0.0099 S33: 0.0296 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6B0Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000229895. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51554 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 37.943 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 1.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.28100 REMARK 200 R SYM FOR SHELL (I) : 0.28100 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 5F2E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG 4000, 0.2 M CACL2, 0.1 M TRIS REMARK 280 PH=8.5, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 LYS A 169 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 LYS B 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ASP A 30 CG OD1 OD2 REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 THR A 35 OG1 CG2 REMARK 470 MET A 67 CG SD CE REMARK 470 ASP A 108 CG OD1 OD2 REMARK 470 ASP A 126 CG OD1 OD2 REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 470 GLU B 31 CG CD OE1 OE2 REMARK 470 MET B 67 CG SD CE REMARK 470 GLN B 150 CG CD OE1 NE2 REMARK 470 GLU B 168 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 68 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 69 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 97 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 TYR A 137 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 153 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 TYR A 157 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ASP B 33 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 TYR B 64 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 135 CG - CD - NE ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG B 135 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ASP B 153 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 117.80 -34.75 REMARK 500 ALA A 59 -114.08 -165.00 REMARK 500 ALA B 59 -119.74 -159.99 REMARK 500 SER B 122 73.57 -116.51 REMARK 500 ARG B 149 -2.14 77.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 205 O1B 91.0 REMARK 620 3 HOH A 321 O 81.0 91.4 REMARK 620 4 HOH A 331 O 95.0 170.5 96.8 REMARK 620 5 HOH A 339 O 89.3 86.4 170.0 86.3 REMARK 620 6 HOH A 359 O 175.6 87.1 95.1 87.4 94.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 63 OE1 REMARK 620 2 GLU A 63 OE2 52.1 REMARK 620 3 GLY A 138 O 50.7 9.8 REMARK 620 4 HOH A 323 O 55.2 12.3 4.9 REMARK 620 5 HOH A 334 O 47.9 14.3 4.9 7.7 REMARK 620 6 HOH A 432 O 50.4 17.7 7.9 7.9 4.4 REMARK 620 7 HOH A 434 O 54.2 17.0 7.7 5.2 6.8 4.0 REMARK 620 8 HOH A 442 O 53.6 14.4 5.3 3.1 5.7 4.9 2.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 GDP B 206 O3B 90.8 REMARK 620 3 HOH B 319 O 78.8 91.3 REMARK 620 4 HOH B 348 O 93.6 84.8 171.4 REMARK 620 5 HOH B 349 O 172.9 85.8 95.1 92.2 REMARK 620 6 HOH B 356 O 93.0 169.8 98.7 85.5 91.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 63 OE1 REMARK 620 2 GLU B 63 OE2 51.8 REMARK 620 3 GLY B 138 O 51.3 12.0 REMARK 620 4 HOH B 309 O 51.6 19.7 7.7 REMARK 620 5 HOH B 309 O 54.0 19.5 7.7 2.5 REMARK 620 6 HOH B 320 O 56.1 14.6 5.1 7.9 6.2 REMARK 620 7 HOH B 388 O 49.3 17.3 5.7 3.2 5.0 7.9 REMARK 620 8 HOH B 441 O 54.6 16.8 5.4 4.7 3.1 3.2 5.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8ZG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 8ZG B 204 and CYS B REMARK 800 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 8ZG B 204 and CYS B REMARK 800 12 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6B0V RELATED DB: PDB REMARK 900 SAME PROTEIN WITH RELATED COMPOUND BOUND DBREF 6B0Y A 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 6B0Y B 1 169 UNP P01116 RASK_HUMAN 1 169 SEQADV 6B0Y GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 6B0Y CYS A 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 6B0Y SER A 51 UNP P01116 CYS 51 ENGINEERED MUTATION SEQADV 6B0Y LEU A 80 UNP P01116 CYS 80 ENGINEERED MUTATION SEQADV 6B0Y SER A 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQADV 6B0Y GLY B 0 UNP P01116 EXPRESSION TAG SEQADV 6B0Y CYS B 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 6B0Y SER B 51 UNP P01116 CYS 51 ENGINEERED MUTATION SEQADV 6B0Y LEU B 80 UNP P01116 CYS 80 ENGINEERED MUTATION SEQADV 6B0Y SER B 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQRES 1 A 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 2 A 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 170 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 A 170 LYS SEQRES 1 B 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 2 B 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 B 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 B 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER SEQRES 5 B 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 B 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 B 170 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 B 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 B 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 B 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 B 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 B 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 B 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 B 170 LYS HET CA A 201 1 HET CA A 202 1 HET 8ZG A 203 28 HET GOL A 204 6 HET GDP A 205 28 HET GOL B 201 6 HET CA B 202 1 HET CA B 203 1 HET 8ZG B 204 28 HET GOL B 205 6 HET GDP B 206 28 HETNAM CA CALCIUM ION HETNAM 8ZG 1-{4-[6-CHLORO-7-(2-FLUOROPHENYL)QUINAZOLIN-4- HETNAM 2 8ZG YL]PIPERAZIN-1-YL}PROPAN-1-ONE HETNAM GOL GLYCEROL HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CA 4(CA 2+) FORMUL 5 8ZG 2(C21 H20 CL F N4 O) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 7 GDP 2(C10 H15 N5 O11 P2) FORMUL 14 HOH *329(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 GLY A 75 1 11 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 GLU A 168 1 18 HELIX 7 AA7 GLY B 15 ASN B 26 1 12 HELIX 8 AA8 SER B 65 THR B 74 1 10 HELIX 9 AA9 ASN B 86 LYS B 104 1 19 HELIX 10 AB1 ASP B 126 GLY B 138 1 13 HELIX 11 AB2 GLY B 151 GLU B 168 1 18 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O ILE A 55 N TYR A 40 SHEET 3 AA1 6 THR A 2 VAL A 9 1 N THR A 2 O LEU A 52 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O VAL A 114 N LEU A 80 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 ASP B 38 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O ASP B 57 N ASP B 38 SHEET 3 AA2 6 GLU B 3 VAL B 9 1 N LEU B 6 O LEU B 56 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O LEU B 79 N VAL B 9 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O VAL B 114 N LEU B 80 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 LINK SG ACYS A 12 C28 8ZG A 203 1555 1555 1.67 LINK SG BCYS A 12 C28 8ZG A 203 1555 1555 1.63 LINK SG ACYS B 12 C28 8ZG B 204 1555 1555 1.68 LINK SG BCYS B 12 C28 8ZG B 204 1555 1555 1.64 LINK OG SER A 17 CA CA A 201 1555 1555 2.35 LINK OE1 GLU A 63 CA CA A 202 1555 1655 2.56 LINK OE2 GLU A 63 CA CA A 202 1555 1655 2.54 LINK O GLY A 138 CA CA A 202 1555 1555 2.30 LINK CA CA A 201 O1B GDP A 205 1555 1555 2.34 LINK CA CA A 201 O HOH A 321 1555 1555 2.28 LINK CA CA A 201 O HOH A 331 1555 1555 2.35 LINK CA CA A 201 O HOH A 339 1555 1555 2.30 LINK CA CA A 201 O HOH A 359 1555 1555 2.37 LINK CA CA A 202 O HOH A 323 1555 1555 2.47 LINK CA CA A 202 O HOH A 334 1555 1555 2.66 LINK CA CA A 202 O HOH A 432 1555 1455 2.55 LINK CA CA A 202 O HOH A 434 1555 1455 2.61 LINK CA CA A 202 O HOH A 442 1555 1555 2.45 LINK OG SER B 17 CA CA B 202 1555 1555 2.31 LINK OE1 GLU B 63 CA CA B 203 1555 1455 2.57 LINK OE2 GLU B 63 CA CA B 203 1555 1455 2.47 LINK O GLY B 138 CA CA B 203 1555 1555 2.35 LINK CA CA B 202 O3B GDP B 206 1555 1555 2.29 LINK CA CA B 202 O HOH B 319 1555 1555 2.41 LINK CA CA B 202 O HOH B 348 1555 1555 2.42 LINK CA CA B 202 O HOH B 349 1555 1555 2.35 LINK CA CA B 202 O HOH B 356 1555 1555 2.32 LINK CA CA B 203 O AHOH B 309 1555 1555 2.49 LINK CA CA B 203 O BHOH B 309 1555 1555 2.17 LINK CA CA B 203 O HOH B 320 1555 1555 2.45 LINK CA CA B 203 O HOH B 388 1555 1555 2.54 LINK CA CA B 203 O HOH B 441 1555 1555 2.47 SITE 1 AC1 6 SER A 17 GDP A 205 HOH A 321 HOH A 331 SITE 2 AC1 6 HOH A 339 HOH A 359 SITE 1 AC2 7 GLU A 63 GLY A 138 HOH A 323 HOH A 334 SITE 2 AC2 7 HOH A 432 HOH A 434 HOH A 442 SITE 1 AC3 13 VAL A 9 GLY A 10 CYS A 12 LYS A 16 SITE 2 AC3 13 PRO A 34 ALA A 59 GLY A 60 GLU A 62 SITE 3 AC3 13 ARG A 68 MET A 72 HIS A 95 TYR A 96 SITE 4 AC3 13 GLN A 99 SITE 1 AC4 6 ILE A 21 GLN A 25 HIS A 27 TYR A 40 SITE 2 AC4 6 HOH A 302 GLN B 25 SITE 1 AC5 26 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC5 26 SER A 17 ALA A 18 PHE A 28 VAL A 29 SITE 3 AC5 26 ASP A 30 ASN A 116 LYS A 117 ASP A 119 SITE 4 AC5 26 LEU A 120 SER A 145 ALA A 146 LYS A 147 SITE 5 AC5 26 CA A 201 HOH A 339 HOH A 342 HOH A 346 SITE 6 AC5 26 HOH A 359 HOH A 373 HOH A 386 HOH A 390 SITE 7 AC5 26 HOH A 399 HOH A 401 SITE 1 AC6 8 HIS A 94 HIS A 95 GLN A 99 GLU B 62 SITE 2 AC6 8 GLU B 63 HIS B 95 8ZG B 204 HOH B 385 SITE 1 AC7 6 SER B 17 GDP B 206 HOH B 319 HOH B 348 SITE 2 AC7 6 HOH B 349 HOH B 356 SITE 1 AC8 6 GLU B 63 GLY B 138 HOH B 309 HOH B 320 SITE 2 AC8 6 HOH B 388 HOH B 441 SITE 1 AC9 7 GLN A 25 ILE B 21 GLN B 25 HIS B 27 SITE 2 AC9 7 TYR B 32 TYR B 40 HOH B 324 SITE 1 AD1 27 GLY B 13 VAL B 14 GLY B 15 LYS B 16 SITE 2 AD1 27 SER B 17 ALA B 18 PHE B 28 VAL B 29 SITE 3 AD1 27 ASP B 30 GLU B 31 ASN B 116 LYS B 117 SITE 4 AD1 27 ASP B 119 LEU B 120 SER B 145 ALA B 146 SITE 5 AD1 27 LYS B 147 CA B 202 HOH B 317 HOH B 318 SITE 6 AD1 27 HOH B 326 HOH B 347 HOH B 348 HOH B 349 SITE 7 AD1 27 HOH B 379 HOH B 411 HOH B 415 SITE 1 AD2 18 VAL B 9 GLY B 10 ALA B 11 GLY B 13 SITE 2 AD2 18 VAL B 14 LYS B 16 PRO B 34 ALA B 59 SITE 3 AD2 18 GLY B 60 GLU B 62 ARG B 68 MET B 72 SITE 4 AD2 18 HIS B 95 TYR B 96 GLN B 99 GOL B 201 SITE 5 AD2 18 HOH B 402 HOH B 458 SITE 1 AD3 18 VAL B 9 GLY B 10 ALA B 11 GLY B 13 SITE 2 AD3 18 VAL B 14 LYS B 16 PRO B 34 ALA B 59 SITE 3 AD3 18 GLY B 60 GLU B 62 ARG B 68 MET B 72 SITE 4 AD3 18 HIS B 95 TYR B 96 GLN B 99 GOL B 201 SITE 5 AD3 18 HOH B 402 HOH B 458 CRYST1 33.430 39.660 61.850 77.45 81.71 77.12 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029913 -0.006840 -0.003103 0.00000 SCALE2 0.000000 0.025865 -0.005058 0.00000 SCALE3 0.000000 0.000000 0.016648 0.00000