HEADER SIGNALING PROTEIN 15-SEP-17 6B0Y
TITLE CRYSTAL STRUCTURE OF SMALL MOLECULE ARS-917 COVALENTLY BOUND TO K-RAS
TITLE 2 G12C
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: GTPASE KRAS;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: UNP RESIDUES 1-169;
COMPND 5 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS;
COMPND 6 ENGINEERED: YES;
COMPND 7 MUTATION: YES;
COMPND 8 OTHER_DETAILS: GTPASE DOMAIN
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: KRAS, KRAS2, RASK2;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PJEXPRESS411
KEYWDS SMALL GTPASE DOMAIN, COVALENT INHIBITOR BOUND, SWITCH II POCKET, GDP
KEYWDS 2 BOUND, SIGNALING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR R.HANSEN,U.PETERS,A.BABBAR,Y.CHEN,J.FENG,M.R.JANES,L.-S.LI,P.REN,
AUTHOR 2 Y.LIU,P.P.ZARRINKAR
REVDAT 5 30-OCT-24 6B0Y 1 REMARK
REVDAT 4 04-OCT-23 6B0Y 1 LINK
REVDAT 3 07-NOV-18 6B0Y 1 JRNL
REVDAT 2 30-MAY-18 6B0Y 1 JRNL
REVDAT 1 16-MAY-18 6B0Y 0
JRNL AUTH R.HANSEN,U.PETERS,A.BABBAR,Y.CHEN,J.FENG,M.R.JANES,L.S.LI,
JRNL AUTH 2 P.REN,Y.LIU,P.P.ZARRINKAR
JRNL TITL THE REACTIVITY-DRIVEN BIOCHEMICAL MECHANISM OF COVALENT
JRNL TITL 2 KRASG12CINHIBITORS.
JRNL REF NAT. STRUCT. MOL. BIOL. V. 25 454 2018
JRNL REFN ESSN 1545-9985
JRNL PMID 29760531
JRNL DOI 10.1038/S41594-018-0061-5
REMARK 2
REMARK 2 RESOLUTION. 1.43 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0073
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.94
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7
REMARK 3 NUMBER OF REFLECTIONS : 49052
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.176
REMARK 3 R VALUE (WORKING SET) : 0.174
REMARK 3 FREE R VALUE : 0.207
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900
REMARK 3 FREE R VALUE TEST SET COUNT : 2501
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47
REMARK 3 REFLECTION IN BIN (WORKING SET) : 3531
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.38
REMARK 3 BIN R VALUE (WORKING SET) : 0.2350
REMARK 3 BIN FREE R VALUE SET COUNT : 179
REMARK 3 BIN FREE R VALUE : 0.2500
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2642
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 134
REMARK 3 SOLVENT ATOMS : 329
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.55
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.21000
REMARK 3 B22 (A**2) : 0.37000
REMARK 3 B33 (A**2) : -0.03000
REMARK 3 B12 (A**2) : -0.24000
REMARK 3 B13 (A**2) : 0.05000
REMARK 3 B23 (A**2) : 0.72000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.078
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.831
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2946 ; 0.021 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 2750 ; 0.001 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4010 ; 2.207 ; 2.011
REMARK 3 BOND ANGLES OTHERS (DEGREES): 6334 ; 2.175 ; 3.001
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 363 ; 5.999 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;37.079 ;24.191
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 507 ;14.682 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;15.341 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 444 ; 0.135 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3327 ; 0.014 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 670 ; 0.003 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 2
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 1 A 168
REMARK 3 RESIDUE RANGE : A 200 A 220
REMARK 3 ORIGIN FOR THE GROUP (A): -18.399 9.086 7.136
REMARK 3 T TENSOR
REMARK 3 T11: 0.0101 T22: 0.0270
REMARK 3 T33: 0.0019 T12: 0.0049
REMARK 3 T13: 0.0013 T23: 0.0008
REMARK 3 L TENSOR
REMARK 3 L11: 0.6198 L22: 0.2126
REMARK 3 L33: 0.4766 L12: 0.0848
REMARK 3 L13: 0.1864 L23: -0.0546
REMARK 3 S TENSOR
REMARK 3 S11: -0.0382 S12: 0.0529 S13: 0.0028
REMARK 3 S21: 0.0153 S22: 0.0136 S23: -0.0083
REMARK 3 S31: 0.0003 S32: 0.0037 S33: 0.0246
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 2
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 2 B 168
REMARK 3 RESIDUE RANGE : B 200 B 220
REMARK 3 ORIGIN FOR THE GROUP (A): -2.343 -3.071 35.467
REMARK 3 T TENSOR
REMARK 3 T11: 0.0032 T22: 0.0444
REMARK 3 T33: 0.0054 T12: 0.0018
REMARK 3 T13: 0.0001 T23: 0.0093
REMARK 3 L TENSOR
REMARK 3 L11: 0.2225 L22: 0.3494
REMARK 3 L33: 0.4169 L12: 0.0396
REMARK 3 L13: -0.0809 L23: -0.1374
REMARK 3 S TENSOR
REMARK 3 S11: -0.0256 S12: -0.0197 S13: 0.0034
REMARK 3 S21: -0.0001 S22: -0.0040 S23: -0.0089
REMARK 3 S31: 0.0156 S32: -0.0099 S33: 0.0296
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS U VALUES : WITH TLS ADDED
REMARK 4
REMARK 4 6B0Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-17.
REMARK 100 THE DEPOSITION ID IS D_1000229895.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 10-FEB-14
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 17-ID
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000
REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM
REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51554
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430
REMARK 200 RESOLUTION RANGE LOW (A) : 37.943
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7
REMARK 200 DATA REDUNDANCY : 1.600
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.07600
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51
REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9
REMARK 200 DATA REDUNDANCY IN SHELL : 1.60
REMARK 200 R MERGE FOR SHELL (I) : 0.28100
REMARK 200 R SYM FOR SHELL (I) : 0.28100
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER 2.5.6
REMARK 200 STARTING MODEL: 5F2E
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 38.68
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG 4000, 0.2 M CACL2, 0.1 M TRIS
REMARK 280 PH=8.5, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 0
REMARK 465 LYS A 169
REMARK 465 GLY B 0
REMARK 465 MET B 1
REMARK 465 LYS B 169
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 MET A 1 CG SD CE
REMARK 470 ASP A 30 CG OD1 OD2
REMARK 470 GLU A 31 CG CD OE1 OE2
REMARK 470 THR A 35 OG1 CG2
REMARK 470 MET A 67 CG SD CE
REMARK 470 ASP A 108 CG OD1 OD2
REMARK 470 ASP A 126 CG OD1 OD2
REMARK 470 GLU A 168 CG CD OE1 OE2
REMARK 470 GLU B 31 CG CD OE1 OE2
REMARK 470 MET B 67 CG SD CE
REMARK 470 GLN B 150 CG CD OE1 NE2
REMARK 470 GLU B 168 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES
REMARK 500 ARG A 68 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES
REMARK 500 ASP A 69 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES
REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES
REMARK 500 ARG A 97 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES
REMARK 500 TYR A 137 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES
REMARK 500 ASP A 153 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES
REMARK 500 TYR A 157 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES
REMARK 500 ASP B 33 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES
REMARK 500 TYR B 64 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES
REMARK 500 ARG B 135 CG - CD - NE ANGL. DEV. = 14.1 DEGREES
REMARK 500 ARG B 135 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES
REMARK 500 ASP B 153 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 33 117.80 -34.75
REMARK 500 ALA A 59 -114.08 -165.00
REMARK 500 ALA B 59 -119.74 -159.99
REMARK 500 SER B 122 73.57 -116.51
REMARK 500 ARG B 149 -2.14 77.74
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 201 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 SER A 17 OG
REMARK 620 2 GDP A 205 O1B 91.0
REMARK 620 3 HOH A 321 O 81.0 91.4
REMARK 620 4 HOH A 331 O 95.0 170.5 96.8
REMARK 620 5 HOH A 339 O 89.3 86.4 170.0 86.3
REMARK 620 6 HOH A 359 O 175.6 87.1 95.1 87.4 94.5
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 202 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU A 63 OE1
REMARK 620 2 GLU A 63 OE2 52.1
REMARK 620 3 GLY A 138 O 50.7 9.8
REMARK 620 4 HOH A 323 O 55.2 12.3 4.9
REMARK 620 5 HOH A 334 O 47.9 14.3 4.9 7.7
REMARK 620 6 HOH A 432 O 50.4 17.7 7.9 7.9 4.4
REMARK 620 7 HOH A 434 O 54.2 17.0 7.7 5.2 6.8 4.0
REMARK 620 8 HOH A 442 O 53.6 14.4 5.3 3.1 5.7 4.9 2.5
REMARK 620 N 1 2 3 4 5 6 7
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA B 202 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 SER B 17 OG
REMARK 620 2 GDP B 206 O3B 90.8
REMARK 620 3 HOH B 319 O 78.8 91.3
REMARK 620 4 HOH B 348 O 93.6 84.8 171.4
REMARK 620 5 HOH B 349 O 172.9 85.8 95.1 92.2
REMARK 620 6 HOH B 356 O 93.0 169.8 98.7 85.5 91.5
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA B 203 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU B 63 OE1
REMARK 620 2 GLU B 63 OE2 51.8
REMARK 620 3 GLY B 138 O 51.3 12.0
REMARK 620 4 HOH B 309 O 51.6 19.7 7.7
REMARK 620 5 HOH B 309 O 54.0 19.5 7.7 2.5
REMARK 620 6 HOH B 320 O 56.1 14.6 5.1 7.9 6.2
REMARK 620 7 HOH B 388 O 49.3 17.3 5.7 3.2 5.0 7.9
REMARK 620 8 HOH B 441 O 54.6 16.8 5.4 4.7 3.1 3.2 5.4
REMARK 620 N 1 2 3 4 5 6 7
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 8ZG A 203
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 204
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 205
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 203
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 205
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 206
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 8ZG B 204 and CYS B
REMARK 800 12
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 8ZG B 204 and CYS B
REMARK 800 12
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 6B0V RELATED DB: PDB
REMARK 900 SAME PROTEIN WITH RELATED COMPOUND BOUND
DBREF 6B0Y A 1 169 UNP P01116 RASK_HUMAN 1 169
DBREF 6B0Y B 1 169 UNP P01116 RASK_HUMAN 1 169
SEQADV 6B0Y GLY A 0 UNP P01116 EXPRESSION TAG
SEQADV 6B0Y CYS A 12 UNP P01116 GLY 12 ENGINEERED MUTATION
SEQADV 6B0Y SER A 51 UNP P01116 CYS 51 ENGINEERED MUTATION
SEQADV 6B0Y LEU A 80 UNP P01116 CYS 80 ENGINEERED MUTATION
SEQADV 6B0Y SER A 118 UNP P01116 CYS 118 ENGINEERED MUTATION
SEQADV 6B0Y GLY B 0 UNP P01116 EXPRESSION TAG
SEQADV 6B0Y CYS B 12 UNP P01116 GLY 12 ENGINEERED MUTATION
SEQADV 6B0Y SER B 51 UNP P01116 CYS 51 ENGINEERED MUTATION
SEQADV 6B0Y LEU B 80 UNP P01116 CYS 80 ENGINEERED MUTATION
SEQADV 6B0Y SER B 118 UNP P01116 CYS 118 ENGINEERED MUTATION
SEQRES 1 A 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS
SEQRES 2 A 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN
SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP
SEQRES 4 A 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER
SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR
SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY
SEQRES 7 A 170 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE
SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL
SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN
SEQRES 10 A 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN
SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE
SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA
SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU
SEQRES 14 A 170 LYS
SEQRES 1 B 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS
SEQRES 2 B 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN
SEQRES 3 B 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP
SEQRES 4 B 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER
SEQRES 5 B 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR
SEQRES 6 B 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY
SEQRES 7 B 170 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE
SEQRES 8 B 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL
SEQRES 9 B 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN
SEQRES 10 B 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN
SEQRES 11 B 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE
SEQRES 12 B 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA
SEQRES 13 B 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU
SEQRES 14 B 170 LYS
HET CA A 201 1
HET CA A 202 1
HET 8ZG A 203 28
HET GOL A 204 6
HET GDP A 205 28
HET GOL B 201 6
HET CA B 202 1
HET CA B 203 1
HET 8ZG B 204 28
HET GOL B 205 6
HET GDP B 206 28
HETNAM CA CALCIUM ION
HETNAM 8ZG 1-{4-[6-CHLORO-7-(2-FLUOROPHENYL)QUINAZOLIN-4-
HETNAM 2 8ZG YL]PIPERAZIN-1-YL}PROPAN-1-ONE
HETNAM GOL GLYCEROL
HETNAM GDP GUANOSINE-5'-DIPHOSPHATE
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 3 CA 4(CA 2+)
FORMUL 5 8ZG 2(C21 H20 CL F N4 O)
FORMUL 6 GOL 3(C3 H8 O3)
FORMUL 7 GDP 2(C10 H15 N5 O11 P2)
FORMUL 14 HOH *329(H2 O)
HELIX 1 AA1 GLY A 15 ASN A 26 1 12
HELIX 2 AA2 SER A 65 GLY A 75 1 11
HELIX 3 AA3 ASN A 86 ASP A 92 1 7
HELIX 4 AA4 ASP A 92 ASP A 105 1 14
HELIX 5 AA5 ASP A 126 GLY A 138 1 13
HELIX 6 AA6 GLY A 151 GLU A 168 1 18
HELIX 7 AA7 GLY B 15 ASN B 26 1 12
HELIX 8 AA8 SER B 65 THR B 74 1 10
HELIX 9 AA9 ASN B 86 LYS B 104 1 19
HELIX 10 AB1 ASP B 126 GLY B 138 1 13
HELIX 11 AB2 GLY B 151 GLU B 168 1 18
SHEET 1 AA1 6 ASP A 38 ILE A 46 0
SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O ILE A 55 N TYR A 40
SHEET 3 AA1 6 THR A 2 VAL A 9 1 N THR A 2 O LEU A 52
SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9
SHEET 5 AA1 6 MET A 111 ASN A 116 1 O VAL A 114 N LEU A 80
SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113
SHEET 1 AA2 6 ASP B 38 ILE B 46 0
SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O ASP B 57 N ASP B 38
SHEET 3 AA2 6 GLU B 3 VAL B 9 1 N LEU B 6 O LEU B 56
SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O LEU B 79 N VAL B 9
SHEET 5 AA2 6 MET B 111 ASN B 116 1 O VAL B 114 N LEU B 80
SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113
LINK SG ACYS A 12 C28 8ZG A 203 1555 1555 1.67
LINK SG BCYS A 12 C28 8ZG A 203 1555 1555 1.63
LINK SG ACYS B 12 C28 8ZG B 204 1555 1555 1.68
LINK SG BCYS B 12 C28 8ZG B 204 1555 1555 1.64
LINK OG SER A 17 CA CA A 201 1555 1555 2.35
LINK OE1 GLU A 63 CA CA A 202 1555 1655 2.56
LINK OE2 GLU A 63 CA CA A 202 1555 1655 2.54
LINK O GLY A 138 CA CA A 202 1555 1555 2.30
LINK CA CA A 201 O1B GDP A 205 1555 1555 2.34
LINK CA CA A 201 O HOH A 321 1555 1555 2.28
LINK CA CA A 201 O HOH A 331 1555 1555 2.35
LINK CA CA A 201 O HOH A 339 1555 1555 2.30
LINK CA CA A 201 O HOH A 359 1555 1555 2.37
LINK CA CA A 202 O HOH A 323 1555 1555 2.47
LINK CA CA A 202 O HOH A 334 1555 1555 2.66
LINK CA CA A 202 O HOH A 432 1555 1455 2.55
LINK CA CA A 202 O HOH A 434 1555 1455 2.61
LINK CA CA A 202 O HOH A 442 1555 1555 2.45
LINK OG SER B 17 CA CA B 202 1555 1555 2.31
LINK OE1 GLU B 63 CA CA B 203 1555 1455 2.57
LINK OE2 GLU B 63 CA CA B 203 1555 1455 2.47
LINK O GLY B 138 CA CA B 203 1555 1555 2.35
LINK CA CA B 202 O3B GDP B 206 1555 1555 2.29
LINK CA CA B 202 O HOH B 319 1555 1555 2.41
LINK CA CA B 202 O HOH B 348 1555 1555 2.42
LINK CA CA B 202 O HOH B 349 1555 1555 2.35
LINK CA CA B 202 O HOH B 356 1555 1555 2.32
LINK CA CA B 203 O AHOH B 309 1555 1555 2.49
LINK CA CA B 203 O BHOH B 309 1555 1555 2.17
LINK CA CA B 203 O HOH B 320 1555 1555 2.45
LINK CA CA B 203 O HOH B 388 1555 1555 2.54
LINK CA CA B 203 O HOH B 441 1555 1555 2.47
SITE 1 AC1 6 SER A 17 GDP A 205 HOH A 321 HOH A 331
SITE 2 AC1 6 HOH A 339 HOH A 359
SITE 1 AC2 7 GLU A 63 GLY A 138 HOH A 323 HOH A 334
SITE 2 AC2 7 HOH A 432 HOH A 434 HOH A 442
SITE 1 AC3 13 VAL A 9 GLY A 10 CYS A 12 LYS A 16
SITE 2 AC3 13 PRO A 34 ALA A 59 GLY A 60 GLU A 62
SITE 3 AC3 13 ARG A 68 MET A 72 HIS A 95 TYR A 96
SITE 4 AC3 13 GLN A 99
SITE 1 AC4 6 ILE A 21 GLN A 25 HIS A 27 TYR A 40
SITE 2 AC4 6 HOH A 302 GLN B 25
SITE 1 AC5 26 GLY A 13 VAL A 14 GLY A 15 LYS A 16
SITE 2 AC5 26 SER A 17 ALA A 18 PHE A 28 VAL A 29
SITE 3 AC5 26 ASP A 30 ASN A 116 LYS A 117 ASP A 119
SITE 4 AC5 26 LEU A 120 SER A 145 ALA A 146 LYS A 147
SITE 5 AC5 26 CA A 201 HOH A 339 HOH A 342 HOH A 346
SITE 6 AC5 26 HOH A 359 HOH A 373 HOH A 386 HOH A 390
SITE 7 AC5 26 HOH A 399 HOH A 401
SITE 1 AC6 8 HIS A 94 HIS A 95 GLN A 99 GLU B 62
SITE 2 AC6 8 GLU B 63 HIS B 95 8ZG B 204 HOH B 385
SITE 1 AC7 6 SER B 17 GDP B 206 HOH B 319 HOH B 348
SITE 2 AC7 6 HOH B 349 HOH B 356
SITE 1 AC8 6 GLU B 63 GLY B 138 HOH B 309 HOH B 320
SITE 2 AC8 6 HOH B 388 HOH B 441
SITE 1 AC9 7 GLN A 25 ILE B 21 GLN B 25 HIS B 27
SITE 2 AC9 7 TYR B 32 TYR B 40 HOH B 324
SITE 1 AD1 27 GLY B 13 VAL B 14 GLY B 15 LYS B 16
SITE 2 AD1 27 SER B 17 ALA B 18 PHE B 28 VAL B 29
SITE 3 AD1 27 ASP B 30 GLU B 31 ASN B 116 LYS B 117
SITE 4 AD1 27 ASP B 119 LEU B 120 SER B 145 ALA B 146
SITE 5 AD1 27 LYS B 147 CA B 202 HOH B 317 HOH B 318
SITE 6 AD1 27 HOH B 326 HOH B 347 HOH B 348 HOH B 349
SITE 7 AD1 27 HOH B 379 HOH B 411 HOH B 415
SITE 1 AD2 18 VAL B 9 GLY B 10 ALA B 11 GLY B 13
SITE 2 AD2 18 VAL B 14 LYS B 16 PRO B 34 ALA B 59
SITE 3 AD2 18 GLY B 60 GLU B 62 ARG B 68 MET B 72
SITE 4 AD2 18 HIS B 95 TYR B 96 GLN B 99 GOL B 201
SITE 5 AD2 18 HOH B 402 HOH B 458
SITE 1 AD3 18 VAL B 9 GLY B 10 ALA B 11 GLY B 13
SITE 2 AD3 18 VAL B 14 LYS B 16 PRO B 34 ALA B 59
SITE 3 AD3 18 GLY B 60 GLU B 62 ARG B 68 MET B 72
SITE 4 AD3 18 HIS B 95 TYR B 96 GLN B 99 GOL B 201
SITE 5 AD3 18 HOH B 402 HOH B 458
CRYST1 33.430 39.660 61.850 77.45 81.71 77.12 P 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.029913 -0.006840 -0.003103 0.00000
SCALE2 0.000000 0.025865 -0.005058 0.00000
SCALE3 0.000000 0.000000 0.016648 0.00000