HEADER ISOMERASE/ISOMERASE INHIBITOR 18-SEP-17 6B1K TITLE MACROPHAGE MIGRATION INHIBITORY FACTOR IN COMPLEX WITH A TITLE 2 NAPHTHYRIDINONE INHIBITOR (3A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE MIGRATION INHIBITORY FACTOR; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: MIF,GLYCOSYLATION-INHIBITING FACTOR,GIF,L-DOPACHROME COMPND 5 ISOMERASE,L-DOPACHROME TAUTOMERASE,PHENYLPYRUVATE TAUTOMERASE; COMPND 6 EC: 5.3.2.1,5.3.3.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MIF, GLIF, MMIF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11B KEYWDS CD74 BINDING, TAUTOMERASE, INHIBITOR, COMPLEX, ISOMERASE-ISOMERASE KEYWDS 2 INHIBITOR COMPLEX, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.G.KRIMMER,M.J.ROBERTSON,W.L.JORGENSEN REVDAT 4 04-OCT-23 6B1K 1 REMARK REVDAT 3 01-JAN-20 6B1K 1 REMARK REVDAT 2 17-JAN-18 6B1K 1 REMARK REVDAT 1 03-JAN-18 6B1K 0 JRNL AUTH T.K.DAWSON,P.DZIEDZIC,M.J.ROBERTSON,J.A.CISNEROS, JRNL AUTH 2 S.G.KRIMMER,A.S.NEWTON,J.TIRADO-RIVES,W.L.JORGENSEN JRNL TITL ADDING A HYDROGEN BOND MAY NOT HELP: NAPHTHYRIDINONE VS JRNL TITL 2 QUINOLINE INHIBITORS OF MACROPHAGE MIGRATION INHIBITORY JRNL TITL 3 FACTOR. JRNL REF ACS MED CHEM LETT V. 8 1287 2017 JRNL REFN ISSN 1948-5875 JRNL PMID 29259749 JRNL DOI 10.1021/ACSMEDCHEMLETT.7B00384 REMARK 2 REMARK 2 RESOLUTION. 1.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 117992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.154 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 82.8710 - 3.6327 1.00 4009 212 0.1577 0.1726 REMARK 3 2 3.6327 - 2.8833 1.00 3859 203 0.1475 0.1683 REMARK 3 3 2.8833 - 2.5188 1.00 3809 200 0.1463 0.1719 REMARK 3 4 2.5188 - 2.2885 1.00 3789 200 0.1341 0.1504 REMARK 3 5 2.2885 - 2.1245 1.00 3775 198 0.1254 0.1470 REMARK 3 6 2.1245 - 1.9992 1.00 3779 199 0.1176 0.1324 REMARK 3 7 1.9992 - 1.8991 1.00 3749 197 0.1179 0.1226 REMARK 3 8 1.8991 - 1.8164 1.00 3776 199 0.1115 0.1399 REMARK 3 9 1.8164 - 1.7465 1.00 3729 196 0.1129 0.1220 REMARK 3 10 1.7465 - 1.6862 1.00 3746 198 0.1135 0.1229 REMARK 3 11 1.6862 - 1.6335 1.00 3740 196 0.1072 0.1316 REMARK 3 12 1.6335 - 1.5868 1.00 3745 198 0.1038 0.1263 REMARK 3 13 1.5868 - 1.5450 1.00 3724 195 0.1069 0.1337 REMARK 3 14 1.5450 - 1.5073 1.00 3746 198 0.1032 0.1361 REMARK 3 15 1.5073 - 1.4730 1.00 3704 195 0.1044 0.1409 REMARK 3 16 1.4730 - 1.4417 1.00 3736 196 0.1099 0.1319 REMARK 3 17 1.4417 - 1.4128 1.00 3705 195 0.1128 0.1319 REMARK 3 18 1.4128 - 1.3862 1.00 3726 196 0.1146 0.1417 REMARK 3 19 1.3862 - 1.3614 1.00 3715 196 0.1199 0.1649 REMARK 3 20 1.3614 - 1.3383 1.00 3728 196 0.1208 0.1388 REMARK 3 21 1.3383 - 1.3167 1.00 3721 196 0.1222 0.1428 REMARK 3 22 1.3167 - 1.2965 1.00 3697 195 0.1306 0.1521 REMARK 3 23 1.2965 - 1.2774 1.00 3720 195 0.1309 0.1598 REMARK 3 24 1.2774 - 1.2594 1.00 3716 196 0.1354 0.1658 REMARK 3 25 1.2594 - 1.2424 1.00 3710 195 0.1459 0.1841 REMARK 3 26 1.2424 - 1.2263 1.00 3711 195 0.1522 0.1723 REMARK 3 27 1.2263 - 1.2109 1.00 3708 196 0.1707 0.1727 REMARK 3 28 1.2109 - 1.1963 1.00 3716 195 0.1974 0.2257 REMARK 3 29 1.1963 - 1.1824 1.00 3674 194 0.2331 0.2484 REMARK 3 30 1.1824 - 1.1691 0.92 3430 180 0.2947 0.2919 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3051 REMARK 3 ANGLE : 0.957 4225 REMARK 3 CHIRALITY : 0.083 455 REMARK 3 PLANARITY : 0.007 652 REMARK 3 DIHEDRAL : 23.558 1154 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000230108. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979180 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 118139 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.170 REMARK 200 RESOLUTION RANGE LOW (A) : 200.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.72700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3U18 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M AMMONIUM SULFATE, 0.1 M TRIS-HCL REMARK 280 PH 7.5, 3% ISOPROPANOL, 1.4% DMSO, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 58.45200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 58.45200 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.09400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.45200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.54700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.45200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 76.64100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.45200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.64100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.45200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.54700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 58.45200 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 58.45200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.09400 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 58.45200 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 58.45200 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 51.09400 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 58.45200 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 76.64100 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 58.45200 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 25.54700 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.45200 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 25.54700 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 58.45200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 76.64100 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 58.45200 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 58.45200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.09400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 354 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 388 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 11 CD NE CZ NH1 NH2 REMARK 470 GLN A 24 CD OE1 NE2 REMARK 470 GLN A 28 OE1 NE2 REMARK 470 GLU A 54 CD OE1 OE2 REMARK 470 LYS A 77 CE NZ REMARK 470 ARG A 88 NE CZ NH1 NH2 REMARK 470 ARG B 11 CD NE CZ NH1 NH2 REMARK 470 GLU B 54 OE1 OE2 REMARK 470 LYS B 77 CE NZ REMARK 470 LYS C 66 NZ REMARK 470 LYS C 77 NZ REMARK 470 ARG C 88 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 93 CZ ARG B 93 NH1 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 111 -155.58 -150.65 REMARK 500 SER B 111 -149.48 -150.90 REMARK 500 TRP C 108 130.05 -170.43 REMARK 500 SER C 111 -157.03 -151.23 REMARK 500 THR C 112 -152.79 -122.87 REMARK 500 THR C 112 -153.67 -122.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C9G A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C9G B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C9G C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6B1C RELATED DB: PDB REMARK 900 RELATED ID: 6B2C RELATED DB: PDB DBREF 6B1K A 1 114 UNP P14174 MIF_HUMAN 2 115 DBREF 6B1K B 1 114 UNP P14174 MIF_HUMAN 2 115 DBREF 6B1K C 1 114 UNP P14174 MIF_HUMAN 2 115 SEQRES 1 A 114 PRO MET PHE ILE VAL ASN THR ASN VAL PRO ARG ALA SER SEQRES 2 A 114 VAL PRO ASP GLY PHE LEU SER GLU LEU THR GLN GLN LEU SEQRES 3 A 114 ALA GLN ALA THR GLY LYS PRO PRO GLN TYR ILE ALA VAL SEQRES 4 A 114 HIS VAL VAL PRO ASP GLN LEU MET ALA PHE GLY GLY SER SEQRES 5 A 114 SER GLU PRO CYS ALA LEU CYS SER LEU HIS SER ILE GLY SEQRES 6 A 114 LYS ILE GLY GLY ALA GLN ASN ARG SER TYR SER LYS LEU SEQRES 7 A 114 LEU CYS GLY LEU LEU ALA GLU ARG LEU ARG ILE SER PRO SEQRES 8 A 114 ASP ARG VAL TYR ILE ASN TYR TYR ASP MET ASN ALA ALA SEQRES 9 A 114 ASN VAL GLY TRP ASN ASN SER THR PHE ALA SEQRES 1 B 114 PRO MET PHE ILE VAL ASN THR ASN VAL PRO ARG ALA SER SEQRES 2 B 114 VAL PRO ASP GLY PHE LEU SER GLU LEU THR GLN GLN LEU SEQRES 3 B 114 ALA GLN ALA THR GLY LYS PRO PRO GLN TYR ILE ALA VAL SEQRES 4 B 114 HIS VAL VAL PRO ASP GLN LEU MET ALA PHE GLY GLY SER SEQRES 5 B 114 SER GLU PRO CYS ALA LEU CYS SER LEU HIS SER ILE GLY SEQRES 6 B 114 LYS ILE GLY GLY ALA GLN ASN ARG SER TYR SER LYS LEU SEQRES 7 B 114 LEU CYS GLY LEU LEU ALA GLU ARG LEU ARG ILE SER PRO SEQRES 8 B 114 ASP ARG VAL TYR ILE ASN TYR TYR ASP MET ASN ALA ALA SEQRES 9 B 114 ASN VAL GLY TRP ASN ASN SER THR PHE ALA SEQRES 1 C 114 PRO MET PHE ILE VAL ASN THR ASN VAL PRO ARG ALA SER SEQRES 2 C 114 VAL PRO ASP GLY PHE LEU SER GLU LEU THR GLN GLN LEU SEQRES 3 C 114 ALA GLN ALA THR GLY LYS PRO PRO GLN TYR ILE ALA VAL SEQRES 4 C 114 HIS VAL VAL PRO ASP GLN LEU MET ALA PHE GLY GLY SER SEQRES 5 C 114 SER GLU PRO CYS ALA LEU CYS SER LEU HIS SER ILE GLY SEQRES 6 C 114 LYS ILE GLY GLY ALA GLN ASN ARG SER TYR SER LYS LEU SEQRES 7 C 114 LEU CYS GLY LEU LEU ALA GLU ARG LEU ARG ILE SER PRO SEQRES 8 C 114 ASP ARG VAL TYR ILE ASN TYR TYR ASP MET ASN ALA ALA SEQRES 9 C 114 ASN VAL GLY TRP ASN ASN SER THR PHE ALA HET C9G A 201 24 HET SO4 A 202 5 HET GOL A 203 6 HET C9G B 201 24 HET SO4 B 202 5 HET C9G C 201 24 HET SO4 C 202 5 HET SO4 C 203 5 HETNAM C9G 2-[1-(4-HYDROXYPHENYL)-1H-1,2,3-TRIAZOL-4-YL]-7-METHYL- HETNAM 2 C9G 1,7-NAPHTHYRIDIN-8(7H)-ONE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 C9G 3(C17 H13 N5 O2) FORMUL 5 SO4 4(O4 S 2-) FORMUL 6 GOL C3 H8 O3 FORMUL 12 HOH *333(H2 O) HELIX 1 AA1 PRO A 10 VAL A 14 5 5 HELIX 2 AA2 GLY A 17 GLY A 31 1 15 HELIX 3 AA3 PRO A 33 TYR A 36 5 4 HELIX 4 AA4 GLY A 68 ARG A 88 1 21 HELIX 5 AA5 SER A 90 ASP A 92 5 3 HELIX 6 AA6 ASN A 102 ALA A 104 5 3 HELIX 7 AA7 PRO B 10 VAL B 14 5 5 HELIX 8 AA8 GLY B 17 GLY B 31 1 15 HELIX 9 AA9 PRO B 33 TYR B 36 5 4 HELIX 10 AB1 GLY B 68 ARG B 88 1 21 HELIX 11 AB2 SER B 90 ASP B 92 5 3 HELIX 12 AB3 ASN B 102 ALA B 104 5 3 HELIX 13 AB4 PRO C 10 VAL C 14 5 5 HELIX 14 AB5 GLY C 17 GLY C 31 1 15 HELIX 15 AB6 PRO C 33 TYR C 36 5 4 HELIX 16 AB7 GLY C 68 ARG C 88 1 21 HELIX 17 AB8 SER C 90 ASP C 92 5 3 HELIX 18 AB9 ASN C 102 ALA C 104 5 3 SHEET 1 AA1 7 SER B 111 THR B 112 0 SHEET 2 AA1 7 VAL B 106 TRP B 108 -1 N TRP B 108 O SER B 111 SHEET 3 AA1 7 VAL A 94 ASP A 100 -1 N ILE A 96 O GLY B 107 SHEET 4 AA1 7 ALA A 57 SER A 63 1 N CYS A 59 O ASN A 97 SHEET 5 AA1 7 MET A 2 THR A 7 -1 N ASN A 6 O LEU A 58 SHEET 6 AA1 7 ALA A 38 VAL A 42 1 O VAL A 42 N VAL A 5 SHEET 7 AA1 7 LEU C 46 PHE C 49 -1 O LEU C 46 N VAL A 41 SHEET 1 AA2 6 LEU A 46 PHE A 49 0 SHEET 2 AA2 6 ALA B 38 VAL B 42 -1 O VAL B 39 N ALA A 48 SHEET 3 AA2 6 MET B 2 THR B 7 1 N VAL B 5 O VAL B 42 SHEET 4 AA2 6 ALA B 57 SER B 63 -1 O LEU B 58 N ASN B 6 SHEET 5 AA2 6 VAL B 94 ASP B 100 1 O TYR B 95 N CYS B 59 SHEET 6 AA2 6 VAL C 106 TRP C 108 -1 O GLY C 107 N ILE B 96 SHEET 1 AA3 7 SER A 111 THR A 112 0 SHEET 2 AA3 7 VAL A 106 TRP A 108 -1 N TRP A 108 O SER A 111 SHEET 3 AA3 7 VAL C 94 ASP C 100 -1 O ILE C 96 N GLY A 107 SHEET 4 AA3 7 ALA C 57 SER C 63 1 N CYS C 59 O ASN C 97 SHEET 5 AA3 7 MET C 2 THR C 7 -1 N ASN C 6 O LEU C 58 SHEET 6 AA3 7 ALA C 38 VAL C 42 1 O VAL C 42 N THR C 7 SHEET 7 AA3 7 LEU B 46 PHE B 49 -1 N ALA B 48 O VAL C 39 SITE 1 AC1 11 PRO A 1 MET A 2 LYS A 32 TYR A 36 SITE 2 AC1 11 HIS A 62 ILE A 64 VAL A 106 PHE A 113 SITE 3 AC1 11 PHE B 113 TYR C 95 ASN C 97 SITE 1 AC2 6 GLY A 68 GLY A 69 ALA A 70 GLN A 71 SITE 2 AC2 6 HOH A 308 HOH A 352 SITE 1 AC3 7 PHE A 49 ASP A 92 ASN A 109 HOH A 312 SITE 2 AC3 7 HOH A 321 HOH A 323 GLN B 35 SITE 1 AC4 11 TYR A 95 ASN A 97 ALA A 114 PRO B 1 SITE 2 AC4 11 MET B 2 LYS B 32 TYR B 36 HIS B 62 SITE 3 AC4 11 ILE B 64 VAL B 106 HOH B 355 SITE 1 AC5 7 LYS B 66 GLY B 68 GLY B 69 HOH B 309 SITE 2 AC5 7 HOH B 322 HOH B 350 HOH B 378 SITE 1 AC6 12 TYR B 95 ASN B 97 PRO C 1 MET C 2 SITE 2 AC6 12 LYS C 32 PRO C 33 TYR C 36 HIS C 62 SITE 3 AC6 12 SER C 63 ILE C 64 VAL C 106 PHE C 113 SITE 1 AC7 4 GLY C 68 GLY C 69 ALA C 70 GLN C 71 SITE 1 AC8 6 ARG B 86 ASP C 16 GLY C 17 PHE C 18 SITE 2 AC8 6 LEU C 19 SER C 20 CRYST1 116.904 116.904 102.188 90.00 90.00 90.00 I 41 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008554 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008554 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009786 0.00000