HEADER LIGASE 19-SEP-17 6B1Z TITLE CRYSTAL STRUCTURE OF GLUTAMATE-TRNA SYNTHETASE FROM ELIZABETHKINGIA TITLE 2 ANOPHELIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLUTAMYL-TRNA SYNTHETASE,GLURS; COMPND 5 EC: 6.1.1.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ELIZABETHKINGIA ANOPHELIS; SOURCE 3 ORGANISM_TAXID: 1117645; SOURCE 4 GENE: GLTX, AYC66_05715; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: ELANA.01348.A.B1 KEYWDS SSGCID, ELIZABETHKINGIA ANOPHELIS, GLUTAMATE--TRNA LIGASE, LIGASE, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 04-OCT-23 6B1Z 1 LINK REVDAT 2 04-APR-18 6B1Z 1 REMARK REVDAT 1 04-OCT-17 6B1Z 0 JRNL AUTH D.M.DRANOW,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF GLUTAMATE-TRNA SYNTHETASE FROM JRNL TITL 2 ELIZABETHKINGIA ANOPHELIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 81099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.390 REMARK 3 FREE R VALUE TEST SET COUNT : 1941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4586 - 3.8552 1.00 6141 152 0.1615 0.1910 REMARK 3 2 3.8552 - 3.0602 0.99 5883 144 0.1676 0.1913 REMARK 3 3 3.0602 - 2.6735 0.99 5824 143 0.1830 0.2332 REMARK 3 4 2.6735 - 2.4291 0.99 5775 142 0.1820 0.2190 REMARK 3 5 2.4291 - 2.2550 0.99 5744 141 0.1828 0.2203 REMARK 3 6 2.2550 - 2.1220 0.99 5751 142 0.1866 0.2072 REMARK 3 7 2.1220 - 2.0157 0.99 5708 140 0.1813 0.2146 REMARK 3 8 2.0157 - 1.9280 0.99 5700 142 0.1845 0.2054 REMARK 3 9 1.9280 - 1.8538 0.98 5627 139 0.1899 0.2602 REMARK 3 10 1.8538 - 1.7898 0.97 5577 134 0.2009 0.2140 REMARK 3 11 1.7898 - 1.7338 0.96 5472 137 0.2005 0.2397 REMARK 3 12 1.7338 - 1.6843 0.94 5387 132 0.1954 0.2280 REMARK 3 13 1.6843 - 1.6399 0.93 5328 128 0.1975 0.2439 REMARK 3 14 1.6399 - 1.5999 0.91 5241 125 0.2109 0.2613 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4071 REMARK 3 ANGLE : 0.763 5495 REMARK 3 CHIRALITY : 0.051 594 REMARK 3 PLANARITY : 0.005 719 REMARK 3 DIHEDRAL : 10.551 2455 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.1062 34.5488 117.9989 REMARK 3 T TENSOR REMARK 3 T11: 0.1277 T22: 0.1436 REMARK 3 T33: 0.1238 T12: 0.0105 REMARK 3 T13: -0.0058 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.8734 L22: 3.7332 REMARK 3 L33: 2.6705 L12: -1.2730 REMARK 3 L13: -0.7472 L23: -0.5470 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: 0.0740 S13: -0.1240 REMARK 3 S21: 0.1264 S22: 0.0026 S23: 0.2327 REMARK 3 S31: -0.0597 S32: -0.2491 S33: 0.0032 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0531 49.5570 102.5877 REMARK 3 T TENSOR REMARK 3 T11: 0.1163 T22: 0.1493 REMARK 3 T33: 0.1706 T12: 0.0016 REMARK 3 T13: 0.0311 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.9953 L22: 0.8688 REMARK 3 L33: 1.4046 L12: -0.1295 REMARK 3 L13: 0.3227 L23: -0.4852 REMARK 3 S TENSOR REMARK 3 S11: -0.0862 S12: 0.0146 S13: 0.0045 REMARK 3 S21: 0.0711 S22: 0.1013 S23: 0.1420 REMARK 3 S31: -0.0463 S32: -0.2469 S33: -0.0035 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 424 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.3632 20.4011 115.1423 REMARK 3 T TENSOR REMARK 3 T11: 0.1436 T22: 0.1797 REMARK 3 T33: 0.1376 T12: -0.0126 REMARK 3 T13: -0.0131 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.1399 L22: 2.8667 REMARK 3 L33: 0.7035 L12: -0.5414 REMARK 3 L13: 0.1786 L23: -1.1706 REMARK 3 S TENSOR REMARK 3 S11: 0.0459 S12: -0.0035 S13: -0.0058 REMARK 3 S21: -0.1625 S22: -0.0354 S23: 0.0352 REMARK 3 S31: 0.1048 S32: 0.0035 S33: 0.0078 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 425 THROUGH 501 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.5409 -17.7340 125.7549 REMARK 3 T TENSOR REMARK 3 T11: 0.6327 T22: 0.4282 REMARK 3 T33: 0.6209 T12: 0.1419 REMARK 3 T13: 0.1551 T23: 0.2423 REMARK 3 L TENSOR REMARK 3 L11: 0.9688 L22: 2.1416 REMARK 3 L33: 1.5865 L12: -1.3607 REMARK 3 L13: 0.4076 L23: -0.1086 REMARK 3 S TENSOR REMARK 3 S11: -0.4168 S12: -0.5098 S13: -0.7715 REMARK 3 S21: 0.2584 S22: -0.1704 S23: -0.5786 REMARK 3 S31: 1.0079 S32: 0.5526 S33: 0.0032 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000230153. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83273 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 44.441 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.052 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.12 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MR-ROSETTA REMARK 200 STARTING MODEL: 2JA2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ELANA.01348.A.B1.PW38250 AT 18.25 REMARK 280 MG/ML WAS MIXED 1:1 WITH JCSG+ (A5): 0.2 M MAGNESIUM FORMATE, 20% REMARK 280 (W/V) PEG-3350, CRYOPROTECTED WITH 20% ETHYLENE GLYCOL. TRAY: REMARK 280 292004A5, PUCK: QRH6-5., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.58500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.29500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.89000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.29500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.58500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.89000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 TRP A 419 REMARK 465 SER A 420 REMARK 465 PRO A 421 REMARK 465 GLU A 422 REMARK 465 THR A 423 REMARK 465 LEU A 502 REMARK 465 LYS A 503 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 GLN A 116 CG CD OE1 NE2 REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 LYS A 262 CG CD CE NZ REMARK 470 ARG A 263 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 267 CG CD CE NZ REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 GLU A 373 CG CD OE1 OE2 REMARK 470 GLU A 388 CG CD OE1 OE2 REMARK 470 ARG A 389 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 412 CG CD OE1 OE2 REMARK 470 LYS A 413 CG CD CE NZ REMARK 470 SER A 415 OG REMARK 470 LYS A 416 CG CD CE NZ REMARK 470 LYS A 417 CG CD CE NZ REMARK 470 VAL A 425 CG1 CG2 REMARK 470 LEU A 426 CG CD1 CD2 REMARK 470 MET A 427 CG SD CE REMARK 470 GLU A 429 CG CD OE1 OE2 REMARK 470 LEU A 430 CG CD1 CD2 REMARK 470 THR A 431 OG1 CG2 REMARK 470 GLU A 432 CG CD OE1 OE2 REMARK 470 ILE A 434 CG1 CG2 CD1 REMARK 470 LEU A 437 CG CD1 CD2 REMARK 470 ASP A 438 CG OD1 OD2 REMARK 470 LYS A 440 CG CD CE NZ REMARK 470 GLU A 442 CG CD OE1 OE2 REMARK 470 ILE A 443 CG1 CG2 CD1 REMARK 470 GLU A 446 CG CD OE1 OE2 REMARK 470 HIS A 450 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 453 CG CD OE1 OE2 REMARK 470 LYS A 455 CG CD CE NZ REMARK 470 VAL A 462 CG1 CG2 REMARK 470 LYS A 488 CG CD CE NZ REMARK 470 GLU A 500 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 348 O HOH A 701 2.16 REMARK 500 O HOH A 990 O HOH A 1152 2.17 REMARK 500 O HOH A 1152 O HOH A 1199 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 138 -163.28 -104.51 REMARK 500 SER A 436 71.30 -67.86 REMARK 500 ASP A 438 99.71 -61.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 624 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 176 O REMARK 620 2 HOH A 702 O 86.3 REMARK 620 3 HOH A 814 O 175.2 90.2 REMARK 620 4 HOH A 816 O 81.7 68.7 94.1 REMARK 620 5 HOH A 831 O 91.7 161.0 90.5 92.3 REMARK 620 6 HOH A 916 O 99.9 101.2 83.9 169.7 97.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 616 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 617 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 618 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 619 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 620 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 621 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 622 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 623 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 624 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-ELANA.01348.A RELATED DB: TARGETTRACK DBREF1 6B1Z A 1 503 UNP A0A1T3FQP0_9FLAO DBREF2 6B1Z A A0A1T3FQP0 1 503 SEQADV 6B1Z MET A -7 UNP A0A1T3FQP INITIATING METHIONINE SEQADV 6B1Z ALA A -6 UNP A0A1T3FQP EXPRESSION TAG SEQADV 6B1Z HIS A -5 UNP A0A1T3FQP EXPRESSION TAG SEQADV 6B1Z HIS A -4 UNP A0A1T3FQP EXPRESSION TAG SEQADV 6B1Z HIS A -3 UNP A0A1T3FQP EXPRESSION TAG SEQADV 6B1Z HIS A -2 UNP A0A1T3FQP EXPRESSION TAG SEQADV 6B1Z HIS A -1 UNP A0A1T3FQP EXPRESSION TAG SEQADV 6B1Z HIS A 0 UNP A0A1T3FQP EXPRESSION TAG SEQRES 1 A 511 MET ALA HIS HIS HIS HIS HIS HIS MET GLU LYS VAL ARG SEQRES 2 A 511 VAL ARG PHE ALA PRO SER PRO THR GLY PRO LEU HIS LEU SEQRES 3 A 511 GLY GLY VAL ARG THR ALA LEU TYR ASP TYR LEU PHE ALA SEQRES 4 A 511 LYS HIS ASN GLY GLY ASP PHE ILE LEU ARG ILE GLU ASP SEQRES 5 A 511 THR ASP THR GLN ARG TYR VAL PRO GLY SER GLU GLU TYR SEQRES 6 A 511 ILE MET GLU ALA LEU GLU TRP ILE GLY MET VAL PRO ASP SEQRES 7 A 511 GLU SER PRO LYS HIS GLY GLY PRO TYR ALA PRO TYR ARG SEQRES 8 A 511 GLN SER GLU ARG ARG ASP ILE TYR ASP ARG TYR THR GLU SEQRES 9 A 511 GLN ILE LEU LYS THR ASP TYR ALA TYR LEU ALA PHE ASP SEQRES 10 A 511 THR PRO GLU GLU LEU ASP GLN ILE ARG ALA GLU PHE GLU SEQRES 11 A 511 ALA ARG GLY ASP VAL PHE ALA TYR ASN TYR GLU THR ARG SEQRES 12 A 511 ASN ARG LEU ARG ASN SER ILE SER LEU PRO GLU GLU GLU SEQRES 13 A 511 VAL LYS LYS LEU LEU GLU GLU LYS THR PRO TYR VAL ILE SEQRES 14 A 511 ARG PHE LYS MET PRO LEU ASP ARG ILE ILE ASN LEU ASN SEQRES 15 A 511 ASP ILE ILE ARG GLY LYS PHE SER VAL ASN THR ASN THR SEQRES 16 A 511 LEU ASP ASP LYS VAL LEU VAL LYS ASN ASP GLY MET PRO SEQRES 17 A 511 THR TYR HIS PHE ALA ASN ILE ILE ASP ASP HIS GLU MET SEQRES 18 A 511 LYS ILE THR HIS VAL ILE ARG GLY GLU GLU TRP LEU PRO SEQRES 19 A 511 SER MET ALA LEU HIS VAL LEU LEU TYR GLU ALA MET GLY SEQRES 20 A 511 TRP ASP ALA PRO GLU PHE ALA HIS LEU SER LEU ILE LEU SEQRES 21 A 511 LYS PRO GLU GLY LYS GLY LYS LEU SER LYS ARG ASP GLY SEQRES 22 A 511 ASP LYS PHE GLY PHE PRO VAL PHE PRO LEU ASN PHE THR SEQRES 23 A 511 ASP PRO ALA THR GLY ASN THR SER ALA GLY TYR ARG GLU SEQRES 24 A 511 GLU GLY TYR LEU PRO GLU ALA PHE ILE ASN MET VAL ALA SEQRES 25 A 511 MET LEU GLY TRP SER PRO ALA ASP ASN LYS GLU ILE VAL SEQRES 26 A 511 SER MET ASP GLU MET ILE LYS GLU PHE ASP LEU ASN LYS SEQRES 27 A 511 VAL HIS LYS ALA GLY ALA ARG PHE SER ALA GLU LYS ALA SEQRES 28 A 511 LYS TRP PHE ASN GLN GLN TYR LEU GLN LEU MET SER ASN SEQRES 29 A 511 GLU ALA ILE LEU PRO GLU PHE LYS LYS VAL LEU ALA GLU SEQRES 30 A 511 ASN ASN VAL GLU VAL SER ASP GLU LYS ALA LEU LYS ILE SEQRES 31 A 511 ILE GLY LEU MET LYS GLU ARG ALA THR PHE VAL LYS ASP SEQRES 32 A 511 ILE TYR ASN ASP GLY LYS PHE PHE PHE HIS ALA PRO GLU SEQRES 33 A 511 SER PHE ASP GLU LYS ALA SER LYS LYS ALA TRP SER PRO SEQRES 34 A 511 GLU THR ALA VAL LEU MET GLN GLU LEU THR GLU ALA ILE SEQRES 35 A 511 SER SER LEU ASP PHE LYS ALA GLU ILE ILE LYS GLU SER SEQRES 36 A 511 ILE HIS HIS LEU ALA GLU ALA LYS GLY LEU GLY MET GLY SEQRES 37 A 511 LYS VAL MET MET PRO LEU ARG LEU SER LEU VAL GLY GLU SEQRES 38 A 511 LEU LYS GLY PRO ASP VAL PRO ASP LEU MET GLU MET ILE SEQRES 39 A 511 GLY LYS GLU GLU THR ILE SER ARG ILE ASN LYS ALA ILE SEQRES 40 A 511 GLU THR LEU LYS HET FMT A 601 3 HET FMT A 602 3 HET FMT A 603 3 HET FMT A 604 3 HET FMT A 605 3 HET FMT A 606 3 HET FMT A 607 3 HET FMT A 608 3 HET FMT A 609 3 HET FMT A 610 3 HET FMT A 611 3 HET FMT A 612 3 HET FMT A 613 3 HET FMT A 614 3 HET FMT A 615 3 HET FMT A 616 3 HET EDO A 617 4 HET EDO A 618 4 HET EDO A 619 4 HET EDO A 620 4 HET EDO A 621 4 HET EDO A 622 4 HET EDO A 623 4 HET MG A 624 1 HETNAM FMT FORMIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 FMT 16(C H2 O2) FORMUL 18 EDO 7(C2 H6 O2) FORMUL 25 MG MG 2+ FORMUL 26 HOH *576(H2 O) HELIX 1 AA1 HIS A 17 ASN A 34 1 18 HELIX 2 AA2 ASP A 46 TYR A 50 5 5 HELIX 3 AA3 GLY A 53 GLY A 66 1 14 HELIX 4 AA4 ARG A 83 GLU A 86 5 4 HELIX 5 AA5 ARG A 87 LEU A 99 1 13 HELIX 6 AA6 THR A 110 ARG A 124 1 15 HELIX 7 AA7 THR A 134 LEU A 138 5 5 HELIX 8 AA8 PRO A 145 GLU A 155 1 11 HELIX 9 AA9 ASN A 186 LEU A 188 5 3 HELIX 10 AB1 THR A 201 MET A 213 1 13 HELIX 11 AB2 GLU A 223 PRO A 226 5 4 HELIX 12 AB3 SER A 227 GLY A 239 1 13 HELIX 13 AB4 SER A 261 GLY A 269 1 9 HELIX 14 AB5 LEU A 295 MET A 305 1 11 HELIX 15 AB6 SER A 318 PHE A 326 1 9 HELIX 16 AB7 ASP A 327 VAL A 331 5 5 HELIX 17 AB8 SER A 339 MET A 354 1 16 HELIX 18 AB9 SER A 355 ASN A 370 1 16 HELIX 19 AC1 SER A 375 LYS A 387 1 13 HELIX 20 AC2 PHE A 392 ASP A 399 1 8 HELIX 21 AC3 GLY A 400 PHE A 404 5 5 HELIX 22 AC4 ASP A 411 ALA A 418 1 8 HELIX 23 AC5 VAL A 425 SER A 435 1 11 HELIX 24 AC6 LYS A 440 LYS A 455 1 16 HELIX 25 AC7 GLY A 458 GLY A 472 1 15 HELIX 26 AC8 ASP A 478 GLU A 500 1 23 SHEET 1 AA1 2 ARG A 5 PHE A 8 0 SHEET 2 AA1 2 ASP A 37 LEU A 40 1 O ILE A 39 N PHE A 8 SHEET 1 AA2 3 ALA A 104 ALA A 107 0 SHEET 2 AA2 3 VAL A 160 PHE A 163 -1 O VAL A 160 N ALA A 107 SHEET 3 AA2 3 VAL A 192 VAL A 194 -1 O LEU A 193 N ILE A 161 SHEET 1 AA3 2 ILE A 170 ASP A 175 0 SHEET 2 AA3 2 GLY A 179 ASN A 184 -1 O PHE A 181 N LEU A 173 SHEET 1 AA4 2 HIS A 217 GLY A 221 0 SHEET 2 AA4 2 GLU A 244 LEU A 248 1 O GLU A 244 N VAL A 218 SHEET 1 AA5 2 PHE A 277 THR A 278 0 SHEET 2 AA5 2 THR A 285 SER A 286 -1 O SER A 286 N PHE A 277 LINK O ILE A 176 MG MG A 624 1555 1555 1.94 LINK MG MG A 624 O HOH A 702 1555 1655 2.31 LINK MG MG A 624 O HOH A 814 1555 1655 2.30 LINK MG MG A 624 O HOH A 816 1555 1555 2.18 LINK MG MG A 624 O HOH A 831 1555 1555 2.06 LINK MG MG A 624 O HOH A 916 1555 1555 2.05 CISPEP 1 ALA A 80 PRO A 81 0 4.62 SITE 1 AC1 5 ARG A 88 ASP A 89 SER A 375 ASP A 376 SITE 2 AC1 5 HOH A 874 SITE 1 AC2 4 ARG A 7 ARG A 220 HOH A 787 HOH A 838 SITE 1 AC3 6 SER A 339 ALA A 340 GLU A 341 HOH A 783 SITE 2 AC3 6 HOH A 966 HOH A1077 SITE 1 AC4 4 HOH A 726 HOH A 822 HOH A 999 HOH A1155 SITE 1 AC5 3 GLU A 222 PRO A 226 HOH A 706 SITE 1 AC6 2 GLN A 116 HOH A 915 SITE 1 AC7 2 HOH A1020 HOH A1073 SITE 1 AC8 4 PHE A 8 HOH A 739 HOH A 836 HOH A1045 SITE 1 AC9 4 HIS A 33 ASN A 34 GLY A 35 FMT A 616 SITE 1 AD1 4 HOH A 723 HOH A 782 HOH A 859 HOH A 956 SITE 1 AD2 5 ARG A 178 GLU A 222 SER A 249 LYS A 333 SITE 2 AD2 5 HOH A1063 SITE 1 AD3 3 ILE A 215 ASP A 241 HOH A 885 SITE 1 AD4 4 GLU A 43 TYR A 202 ASN A 206 TRP A 224 SITE 1 AD5 4 LYS A 445 ASP A 478 ASP A 481 HOH A 871 SITE 1 AD6 3 LYS A 378 PHE A 403 MET A 485 SITE 1 AD7 2 LYS A 32 FMT A 609 SITE 1 AD8 6 LEU A 248 SER A 249 GLY A 307 HIS A 332 SITE 2 AD8 6 ALA A 334 HOH A 809 SITE 1 AD9 2 ASP A 89 SER A 375 SITE 1 AE1 6 HIS A 332 LYS A 333 ALA A 334 HOH A 749 SITE 2 AE1 6 HOH A 772 HOH A1036 SITE 1 AE2 2 TYR A 202 GLU A 223 SITE 1 AE3 8 ASN A 206 ILE A 207 ASP A 210 ARG A 220 SITE 2 AE3 8 HIS A 231 TYR A 235 PHE A 245 HOH A 838 SITE 1 AE4 5 GLY A 239 TRP A 240 ASP A 241 HOH A 762 SITE 2 AE4 5 HOH A 822 SITE 1 AE5 7 ASP A 168 ASN A 184 ASN A 186 ASP A 399 SITE 2 AE5 7 HOH A 780 HOH A 828 HOH A 980 SITE 1 AE6 7 GLU A 112 ILE A 176 HOH A 702 HOH A 814 SITE 2 AE6 7 HOH A 816 HOH A 831 HOH A 916 CRYST1 47.170 99.780 132.590 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021200 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007542 0.00000