HEADER ISOMERASE/ISOMERASE INHIBITOR 19-SEP-17 6B2C
TITLE MACROPHAGE MIGRATION INHIBITORY FACTOR IN COMPLEX WITH A
TITLE 2 NAPHTHYRIDINONE INHIBITOR (4B)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MACROPHAGE MIGRATION INHIBITORY FACTOR;
COMPND 3 CHAIN: A, B, C;
COMPND 4 SYNONYM: MIF,GLYCOSYLATION-INHIBITING FACTOR,GIF,L-DOPACHROME
COMPND 5 ISOMERASE,L-DOPACHROME TAUTOMERASE,PHENYLPYRUVATE TAUTOMERASE;
COMPND 6 EC: 5.3.2.1,5.3.3.12;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: MIF, GLIF, MMIF;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_CELL: BL21;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11B
KEYWDS CD74 BINDING, TAUTOMERASE, INHIBITOR, COMPLEX, ISOMERASE-ISOMERASE
KEYWDS 2 INHIBITOR COMPLEX, ISOMERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR S.G.KRIMMER,M.J.ROBERTSON,W.L.JORGENSEN
REVDAT 4 04-OCT-23 6B2C 1 REMARK
REVDAT 3 01-JAN-20 6B2C 1 REMARK
REVDAT 2 17-JAN-18 6B2C 1 REMARK
REVDAT 1 03-JAN-18 6B2C 0
JRNL AUTH T.K.DAWSON,P.DZIEDZIC,M.J.ROBERTSON,J.A.CISNEROS,
JRNL AUTH 2 S.G.KRIMMER,A.S.NEWTON,J.TIRADO-RIVES,W.L.JORGENSEN
JRNL TITL ADDING A HYDROGEN BOND MAY NOT HELP: NAPHTHYRIDINONE VS
JRNL TITL 2 QUINOLINE INHIBITORS OF MACROPHAGE MIGRATION INHIBITORY
JRNL TITL 3 FACTOR.
JRNL REF ACS MED CHEM LETT V. 8 1287 2017
JRNL REFN ISSN 1948-5875
JRNL PMID 29259749
JRNL DOI 10.1021/ACSMEDCHEMLETT.7B00384
REMARK 2
REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.11.1_2575
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.92
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1
REMARK 3 NUMBER OF REFLECTIONS : 38915
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.193
REMARK 3 R VALUE (WORKING SET) : 0.191
REMARK 3 FREE R VALUE : 0.222
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1946
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 65.9582 - 4.8184 0.98 2784 147 0.1868 0.1987
REMARK 3 2 4.8184 - 3.8246 0.97 2675 141 0.1597 0.1706
REMARK 3 3 3.8246 - 3.3412 0.99 2670 140 0.1835 0.2192
REMARK 3 4 3.3412 - 3.0357 0.99 2663 141 0.2140 0.2446
REMARK 3 5 3.0357 - 2.8181 0.99 2674 140 0.2115 0.2660
REMARK 3 6 2.8181 - 2.6519 0.99 2654 140 0.2034 0.2454
REMARK 3 7 2.6519 - 2.5191 1.00 2665 140 0.2035 0.2754
REMARK 3 8 2.5191 - 2.4095 0.99 2661 140 0.1844 0.1971
REMARK 3 9 2.4095 - 2.3167 1.00 2649 140 0.1784 0.2333
REMARK 3 10 2.3167 - 2.2368 1.00 2663 140 0.2079 0.2355
REMARK 3 11 2.2368 - 2.1668 1.00 2652 139 0.2031 0.2740
REMARK 3 12 2.1668 - 2.1049 1.00 2675 141 0.2158 0.2406
REMARK 3 13 2.1049 - 2.0495 1.00 2634 139 0.2251 0.2692
REMARK 3 14 2.0495 - 1.9995 0.84 2250 118 0.2618 0.3112
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.080
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.008 2677
REMARK 3 ANGLE : 0.762 3660
REMARK 3 CHIRALITY : 0.063 405
REMARK 3 PLANARITY : 0.006 482
REMARK 3 DIHEDRAL : 13.907 1582
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 18
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: (CHAIN A AND RESID 1:26)
REMARK 3 ORIGIN FOR THE GROUP (A): -22.9323 38.3627 8.0573
REMARK 3 T TENSOR
REMARK 3 T11: 0.2087 T22: 0.4001
REMARK 3 T33: 0.3012 T12: -0.2567
REMARK 3 T13: 0.0379 T23: -0.0176
REMARK 3 L TENSOR
REMARK 3 L11: 1.4535 L22: 0.7299
REMARK 3 L33: 0.3921 L12: -0.5932
REMARK 3 L13: 0.6416 L23: -0.5301
REMARK 3 S TENSOR
REMARK 3 S11: -0.2321 S12: -0.1736 S13: -0.0467
REMARK 3 S21: 0.1292 S22: 0.1685 S23: -0.0661
REMARK 3 S31: -0.2003 S32: 0.0329 S33: -0.2437
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: (CHAIN A AND RESID 27:36)
REMARK 3 ORIGIN FOR THE GROUP (A): -36.2068 45.7153 13.4887
REMARK 3 T TENSOR
REMARK 3 T11: 0.3778 T22: 0.4931
REMARK 3 T33: 0.4235 T12: -0.0671
REMARK 3 T13: -0.0284 T23: -0.1312
REMARK 3 L TENSOR
REMARK 3 L11: 0.1995 L22: 0.4113
REMARK 3 L33: 0.2094 L12: -0.1751
REMARK 3 L13: 0.0227 L23: 0.1289
REMARK 3 S TENSOR
REMARK 3 S11: -0.1253 S12: -0.9699 S13: 0.1351
REMARK 3 S21: 0.5764 S22: -0.4086 S23: 0.6836
REMARK 3 S31: 0.4289 S32: -0.4373 S33: -0.0080
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: (CHAIN A AND RESID 37:54)
REMARK 3 ORIGIN FOR THE GROUP (A): -19.8017 35.2803 -1.4011
REMARK 3 T TENSOR
REMARK 3 T11: 0.3327 T22: 0.3529
REMARK 3 T33: 0.3711 T12: -0.1630
REMARK 3 T13: 0.0680 T23: -0.0295
REMARK 3 L TENSOR
REMARK 3 L11: 0.4597 L22: 1.0174
REMARK 3 L33: 0.6970 L12: 0.1571
REMARK 3 L13: 0.0332 L23: 0.3720
REMARK 3 S TENSOR
REMARK 3 S11: -0.0914 S12: -0.2416 S13: -0.2873
REMARK 3 S21: -0.0783 S22: 0.0788 S23: -0.1498
REMARK 3 S31: -0.0196 S32: 0.3831 S33: 0.0092
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: (CHAIN A AND RESID 55:85)
REMARK 3 ORIGIN FOR THE GROUP (A): -27.8585 47.3963 1.6953
REMARK 3 T TENSOR
REMARK 3 T11: 0.3727 T22: 0.3342
REMARK 3 T33: 0.3501 T12: -0.1505
REMARK 3 T13: -0.0186 T23: -0.0303
REMARK 3 L TENSOR
REMARK 3 L11: 0.3535 L22: 0.2309
REMARK 3 L33: 0.4033 L12: 0.0542
REMARK 3 L13: 0.2997 L23: -0.2692
REMARK 3 S TENSOR
REMARK 3 S11: -0.1154 S12: -0.0157 S13: 0.0762
REMARK 3 S21: -0.2671 S22: 0.0025 S23: 0.1032
REMARK 3 S31: -0.5120 S32: 0.0082 S33: -0.0159
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: (CHAIN A AND RESID 86:96)
REMARK 3 ORIGIN FOR THE GROUP (A): -17.4590 44.4041 -0.6615
REMARK 3 T TENSOR
REMARK 3 T11: 0.4149 T22: 0.3597
REMARK 3 T33: 0.3296 T12: -0.2179
REMARK 3 T13: 0.0589 T23: 0.0063
REMARK 3 L TENSOR
REMARK 3 L11: 0.2385 L22: 0.1802
REMARK 3 L33: 0.4266 L12: -0.1836
REMARK 3 L13: 0.0993 L23: -0.2105
REMARK 3 S TENSOR
REMARK 3 S11: -0.2546 S12: 0.1790 S13: 0.2084
REMARK 3 S21: -0.2507 S22: 0.0807 S23: -0.2357
REMARK 3 S31: -0.4604 S32: 0.2103 S33: -0.0154
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: (CHAIN A AND RESID 97:114)
REMARK 3 ORIGIN FOR THE GROUP (A): -43.4670 38.2643 2.9211
REMARK 3 T TENSOR
REMARK 3 T11: 0.3517 T22: 0.4034
REMARK 3 T33: 0.4424 T12: -0.1377
REMARK 3 T13: -0.0192 T23: -0.0531
REMARK 3 L TENSOR
REMARK 3 L11: 0.3226 L22: 0.2239
REMARK 3 L33: 1.2336 L12: -0.0870
REMARK 3 L13: -0.0591 L23: 0.2612
REMARK 3 S TENSOR
REMARK 3 S11: -0.1443 S12: -0.2319 S13: 0.1648
REMARK 3 S21: -0.1247 S22: -0.1015 S23: 0.1186
REMARK 3 S31: -0.2193 S32: -0.5959 S33: -0.0402
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: (CHAIN B AND RESID 1:15)
REMARK 3 ORIGIN FOR THE GROUP (A): -22.4247 25.7898 -10.4922
REMARK 3 T TENSOR
REMARK 3 T11: 0.3750 T22: 0.3214
REMARK 3 T33: 0.3660 T12: -0.1032
REMARK 3 T13: 0.0580 T23: -0.0461
REMARK 3 L TENSOR
REMARK 3 L11: 0.7304 L22: 0.0362
REMARK 3 L33: 0.5308 L12: 0.0231
REMARK 3 L13: 0.4150 L23: 0.1068
REMARK 3 S TENSOR
REMARK 3 S11: -0.0627 S12: 0.1653 S13: -0.0761
REMARK 3 S21: -0.1280 S22: 0.2421 S23: -0.3748
REMARK 3 S31: -0.2261 S32: 0.3323 S33: 0.0000
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: (CHAIN B AND RESID 16:40)
REMARK 3 ORIGIN FOR THE GROUP (A): -18.7265 35.7870 -17.2061
REMARK 3 T TENSOR
REMARK 3 T11: 0.6159 T22: 0.5516
REMARK 3 T33: 0.3927 T12: -0.3297
REMARK 3 T13: 0.1802 T23: -0.0444
REMARK 3 L TENSOR
REMARK 3 L11: 0.6319 L22: 0.5352
REMARK 3 L33: 0.3917 L12: 0.5548
REMARK 3 L13: 0.0330 L23: 0.1870
REMARK 3 S TENSOR
REMARK 3 S11: -0.3291 S12: 0.5645 S13: -0.4380
REMARK 3 S21: -0.3499 S22: 0.0889 S23: -0.4252
REMARK 3 S31: -0.1374 S32: 0.7161 S33: 0.0381
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: (CHAIN B AND RESID 41:54)
REMARK 3 ORIGIN FOR THE GROUP (A): -29.0160 18.4574 -7.1920
REMARK 3 T TENSOR
REMARK 3 T11: 0.4595 T22: 0.2397
REMARK 3 T33: 0.4014 T12: -0.0824
REMARK 3 T13: -0.0009 T23: -0.0099
REMARK 3 L TENSOR
REMARK 3 L11: 0.9115 L22: 0.2716
REMARK 3 L33: 1.0601 L12: 0.4969
REMARK 3 L13: -0.6843 L23: -0.4181
REMARK 3 S TENSOR
REMARK 3 S11: 0.1906 S12: -0.2202 S13: -0.9295
REMARK 3 S21: -0.3425 S22: -0.2575 S23: -0.4699
REMARK 3 S31: 0.6330 S32: 0.1323 S33: -0.0491
REMARK 3 TLS GROUP : 10
REMARK 3 SELECTION: (CHAIN B AND RESID 55:94)
REMARK 3 ORIGIN FOR THE GROUP (A): -29.4732 28.5194 -18.9287
REMARK 3 T TENSOR
REMARK 3 T11: 0.5289 T22: 0.3732
REMARK 3 T33: 0.2955 T12: -0.1586
REMARK 3 T13: 0.0736 T23: -0.0531
REMARK 3 L TENSOR
REMARK 3 L11: 0.9400 L22: 0.2956
REMARK 3 L33: 0.6132 L12: 0.0802
REMARK 3 L13: 0.7857 L23: 0.1224
REMARK 3 S TENSOR
REMARK 3 S11: -0.1095 S12: 0.3225 S13: -0.2789
REMARK 3 S21: -0.2821 S22: 0.2207 S23: 0.1901
REMARK 3 S31: -0.2453 S32: 0.3847 S33: 0.0063
REMARK 3 TLS GROUP : 11
REMARK 3 SELECTION: (CHAIN B AND RESID 95:114)
REMARK 3 ORIGIN FOR THE GROUP (A): -30.3881 44.2406 -9.9703
REMARK 3 T TENSOR
REMARK 3 T11: 0.5402 T22: 0.2632
REMARK 3 T33: 0.2618 T12: -0.2510
REMARK 3 T13: -0.0549 T23: 0.0227
REMARK 3 L TENSOR
REMARK 3 L11: 0.8398 L22: 0.0003
REMARK 3 L33: 0.5535 L12: 0.0538
REMARK 3 L13: -0.3027 L23: -0.0072
REMARK 3 S TENSOR
REMARK 3 S11: -0.4609 S12: -0.0782 S13: -0.0079
REMARK 3 S21: -0.3941 S22: 0.1863 S23: 0.2164
REMARK 3 S31: -0.1893 S32: 0.1170 S33: -0.2091
REMARK 3 TLS GROUP : 12
REMARK 3 SELECTION: (CHAIN C AND RESID 1:26)
REMARK 3 ORIGIN FOR THE GROUP (A): -36.7531 18.9238 2.0585
REMARK 3 T TENSOR
REMARK 3 T11: 0.4609 T22: 0.2737
REMARK 3 T33: 0.2704 T12: -0.1809
REMARK 3 T13: -0.0298 T23: 0.0238
REMARK 3 L TENSOR
REMARK 3 L11: 0.7185 L22: 0.4638
REMARK 3 L33: 0.1182 L12: -0.1578
REMARK 3 L13: -0.3044 L23: 0.1026
REMARK 3 S TENSOR
REMARK 3 S11: 0.1524 S12: 0.1521 S13: -0.1560
REMARK 3 S21: -0.0191 S22: -0.0179 S23: -0.0668
REMARK 3 S31: 0.1722 S32: 0.0402 S33: 0.0027
REMARK 3 TLS GROUP : 13
REMARK 3 SELECTION: (CHAIN C AND RESID 27:40)
REMARK 3 ORIGIN FOR THE GROUP (A): -43.8025 19.4386 -8.8902
REMARK 3 T TENSOR
REMARK 3 T11: 0.4874 T22: 0.3280
REMARK 3 T33: 0.3405 T12: -0.1709
REMARK 3 T13: -0.0469 T23: -0.0321
REMARK 3 L TENSOR
REMARK 3 L11: 0.8224 L22: 0.8353
REMARK 3 L33: 1.0322 L12: -0.5270
REMARK 3 L13: 0.4041 L23: -0.8884
REMARK 3 S TENSOR
REMARK 3 S11: 0.0761 S12: 0.2276 S13: -0.0576
REMARK 3 S21: -0.5482 S22: -0.0784 S23: 0.0644
REMARK 3 S31: 0.3582 S32: 0.2403 S33: 0.0456
REMARK 3 TLS GROUP : 14
REMARK 3 SELECTION: (CHAIN C AND RESID 41:54)
REMARK 3 ORIGIN FOR THE GROUP (A): -29.6277 28.9960 10.6825
REMARK 3 T TENSOR
REMARK 3 T11: 0.3483 T22: 0.4025
REMARK 3 T33: 0.3370 T12: -0.1528
REMARK 3 T13: -0.0330 T23: 0.0416
REMARK 3 L TENSOR
REMARK 3 L11: 0.2977 L22: 0.1647
REMARK 3 L33: 0.0031 L12: -0.1690
REMARK 3 L13: 0.0596 L23: -0.0217
REMARK 3 S TENSOR
REMARK 3 S11: 0.1886 S12: -0.4446 S13: -0.0885
REMARK 3 S21: 0.1166 S22: -0.0265 S23: -0.1702
REMARK 3 S31: 0.3349 S32: -0.1371 S33: 0.0003
REMARK 3 TLS GROUP : 15
REMARK 3 SELECTION: (CHAIN C AND RESID 55:84)
REMARK 3 ORIGIN FOR THE GROUP (A): -45.2108 27.8802 1.1908
REMARK 3 T TENSOR
REMARK 3 T11: 0.3343 T22: 0.3423
REMARK 3 T33: 0.3190 T12: -0.3207
REMARK 3 T13: 0.0043 T23: -0.0341
REMARK 3 L TENSOR
REMARK 3 L11: 0.4169 L22: 1.2171
REMARK 3 L33: 0.2677 L12: 0.0427
REMARK 3 L13: -0.2741 L23: 0.2352
REMARK 3 S TENSOR
REMARK 3 S11: 0.2334 S12: -0.1221 S13: 0.2341
REMARK 3 S21: -0.0053 S22: -0.4274 S23: 0.2753
REMARK 3 S31: -0.1854 S32: -0.4058 S33: -0.0138
REMARK 3 TLS GROUP : 16
REMARK 3 SELECTION: (CHAIN C AND RESID 85:93)
REMARK 3 ORIGIN FOR THE GROUP (A): -39.9375 22.9230 12.9657
REMARK 3 T TENSOR
REMARK 3 T11: 0.4900 T22: 0.4237
REMARK 3 T33: 0.3081 T12: -0.2465
REMARK 3 T13: 0.0993 T23: -0.0171
REMARK 3 L TENSOR
REMARK 3 L11: 0.2985 L22: 1.0779
REMARK 3 L33: 0.0754 L12: -0.3327
REMARK 3 L13: 0.1331 L23: -0.2532
REMARK 3 S TENSOR
REMARK 3 S11: 0.0373 S12: -0.4536 S13: -0.0974
REMARK 3 S21: 0.8078 S22: -0.2572 S23: 0.3397
REMARK 3 S31: 0.4931 S32: -0.3906 S33: -0.0647
REMARK 3 TLS GROUP : 17
REMARK 3 SELECTION: (CHAIN C AND RESID 94:104)
REMARK 3 ORIGIN FOR THE GROUP (A): -42.1108 33.5485 -4.6231
REMARK 3 T TENSOR
REMARK 3 T11: 0.4038 T22: 0.3112
REMARK 3 T33: 0.3593 T12: -0.0965
REMARK 3 T13: -0.0432 T23: -0.0146
REMARK 3 L TENSOR
REMARK 3 L11: 0.2112 L22: 0.2047
REMARK 3 L33: 0.1356 L12: -0.1176
REMARK 3 L13: -0.1207 L23: 0.1606
REMARK 3 S TENSOR
REMARK 3 S11: 0.1410 S12: -0.0951 S13: 0.1745
REMARK 3 S21: -0.2030 S22: 0.0386 S23: 0.1660
REMARK 3 S31: -0.4235 S32: -0.3168 S33: 0.0007
REMARK 3 TLS GROUP : 18
REMARK 3 SELECTION: (CHAIN C AND RESID 105:114)
REMARK 3 ORIGIN FOR THE GROUP (A): -37.9870 27.3508 -21.0284
REMARK 3 T TENSOR
REMARK 3 T11: 0.6425 T22: 0.3699
REMARK 3 T33: 0.3502 T12: -0.0770
REMARK 3 T13: -0.0372 T23: -0.0250
REMARK 3 L TENSOR
REMARK 3 L11: 0.2684 L22: 0.0487
REMARK 3 L33: 0.0689 L12: 0.1163
REMARK 3 L13: 0.0725 L23: 0.0459
REMARK 3 S TENSOR
REMARK 3 S11: -0.0438 S12: 0.4148 S13: 0.2669
REMARK 3 S21: -1.2767 S22: 0.4231 S23: 0.0130
REMARK 3 S31: -0.4108 S32: 0.2919 S33: 0.0076
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6B2C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-17.
REMARK 100 THE DEPOSITION ID IS D_1000230151.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 10-AUG-17
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 24-ID-C
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XDS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38918
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000
REMARK 200 RESOLUTION RANGE LOW (A) : 200.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1
REMARK 200 DATA REDUNDANCY : 4.000
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.07700
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.0000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12
REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1
REMARK 200 DATA REDUNDANCY IN SHELL : 3.90
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : 0.42200
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 3U18
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 68.49
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.99
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M AMMONIUM SULFATE, 0.1 M TRIS-HCL
REMARK 280 PH 7.5, 3% ISOPROPANOL, 2% DMSO, VAPOR DIFFUSION, SITTING DROP,
REMARK 280 TEMPERATURE 293.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+2/3
REMARK 290 6555 -X,-X+Y,-Z+1/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.20800
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.41600
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 70.41600
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.20800
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 6790 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 13290 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 32 NZ
REMARK 470 SER A 53 OG
REMARK 470 LYS A 66 NZ
REMARK 470 ARG A 88 CZ NH1 NH2
REMARK 470 ARG B 11 CG CD NE CZ NH1 NH2
REMARK 470 GLN B 24 CD OE1 NE2
REMARK 470 GLN B 28 CG CD OE1 NE2
REMARK 470 GLN B 35 CG CD OE1 NE2
REMARK 470 LYS B 66 CE NZ
REMARK 470 LYS B 77 CE NZ
REMARK 470 GLU B 85 CG CD OE1 OE2
REMARK 470 ARG B 88 CD NE CZ NH1 NH2
REMARK 470 ARG C 11 CD NE CZ NH1 NH2
REMARK 470 LYS C 32 NZ
REMARK 470 LYS C 66 CE NZ
REMARK 470 LYS C 77 CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 TRP A 108 132.04 -170.53
REMARK 500 PHE C 113 4.22 -66.22
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 C9Y B 201
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue C9Y B 201
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 6B1C RELATED DB: PDB
REMARK 900 RELATED ID: 6B1K RELATED DB: PDB
DBREF 6B2C A 1 114 UNP P14174 MIF_HUMAN 2 115
DBREF 6B2C B 1 114 UNP P14174 MIF_HUMAN 2 115
DBREF 6B2C C 1 114 UNP P14174 MIF_HUMAN 2 115
SEQRES 1 A 114 PRO MET PHE ILE VAL ASN THR ASN VAL PRO ARG ALA SER
SEQRES 2 A 114 VAL PRO ASP GLY PHE LEU SER GLU LEU THR GLN GLN LEU
SEQRES 3 A 114 ALA GLN ALA THR GLY LYS PRO PRO GLN TYR ILE ALA VAL
SEQRES 4 A 114 HIS VAL VAL PRO ASP GLN LEU MET ALA PHE GLY GLY SER
SEQRES 5 A 114 SER GLU PRO CYS ALA LEU CYS SER LEU HIS SER ILE GLY
SEQRES 6 A 114 LYS ILE GLY GLY ALA GLN ASN ARG SER TYR SER LYS LEU
SEQRES 7 A 114 LEU CYS GLY LEU LEU ALA GLU ARG LEU ARG ILE SER PRO
SEQRES 8 A 114 ASP ARG VAL TYR ILE ASN TYR TYR ASP MET ASN ALA ALA
SEQRES 9 A 114 ASN VAL GLY TRP ASN ASN SER THR PHE ALA
SEQRES 1 B 114 PRO MET PHE ILE VAL ASN THR ASN VAL PRO ARG ALA SER
SEQRES 2 B 114 VAL PRO ASP GLY PHE LEU SER GLU LEU THR GLN GLN LEU
SEQRES 3 B 114 ALA GLN ALA THR GLY LYS PRO PRO GLN TYR ILE ALA VAL
SEQRES 4 B 114 HIS VAL VAL PRO ASP GLN LEU MET ALA PHE GLY GLY SER
SEQRES 5 B 114 SER GLU PRO CYS ALA LEU CYS SER LEU HIS SER ILE GLY
SEQRES 6 B 114 LYS ILE GLY GLY ALA GLN ASN ARG SER TYR SER LYS LEU
SEQRES 7 B 114 LEU CYS GLY LEU LEU ALA GLU ARG LEU ARG ILE SER PRO
SEQRES 8 B 114 ASP ARG VAL TYR ILE ASN TYR TYR ASP MET ASN ALA ALA
SEQRES 9 B 114 ASN VAL GLY TRP ASN ASN SER THR PHE ALA
SEQRES 1 C 114 PRO MET PHE ILE VAL ASN THR ASN VAL PRO ARG ALA SER
SEQRES 2 C 114 VAL PRO ASP GLY PHE LEU SER GLU LEU THR GLN GLN LEU
SEQRES 3 C 114 ALA GLN ALA THR GLY LYS PRO PRO GLN TYR ILE ALA VAL
SEQRES 4 C 114 HIS VAL VAL PRO ASP GLN LEU MET ALA PHE GLY GLY SER
SEQRES 5 C 114 SER GLU PRO CYS ALA LEU CYS SER LEU HIS SER ILE GLY
SEQRES 6 C 114 LYS ILE GLY GLY ALA GLN ASN ARG SER TYR SER LYS LEU
SEQRES 7 C 114 LEU CYS GLY LEU LEU ALA GLU ARG LEU ARG ILE SER PRO
SEQRES 8 C 114 ASP ARG VAL TYR ILE ASN TYR TYR ASP MET ASN ALA ALA
SEQRES 9 C 114 ASN VAL GLY TRP ASN ASN SER THR PHE ALA
HET SO4 A 201 5
HET C9Y B 201 26
HETNAM SO4 SULFATE ION
HETNAM C9Y {2-[1-(3-FLUORO-4-HYDROXYPHENYL)-1H-1,2,3-TRIAZOL-4-
HETNAM 2 C9Y YL]-8-OXO-1,7-NAPHTHYRIDIN-7(8H)-YL}ACETIC ACID
FORMUL 4 SO4 O4 S 2-
FORMUL 5 C9Y C18 H12 F N5 O4
FORMUL 6 HOH *143(H2 O)
HELIX 1 AA1 PRO A 10 VAL A 14 5 5
HELIX 2 AA2 GLY A 17 GLY A 31 1 15
HELIX 3 AA3 PRO A 33 TYR A 36 5 4
HELIX 4 AA4 GLY A 68 ARG A 88 1 21
HELIX 5 AA5 SER A 90 ASP A 92 5 3
HELIX 6 AA6 ASN A 102 ALA A 104 5 3
HELIX 7 AA7 PRO B 10 VAL B 14 5 5
HELIX 8 AA8 GLY B 17 GLY B 31 1 15
HELIX 9 AA9 PRO B 33 TYR B 36 5 4
HELIX 10 AB1 GLY B 68 ARG B 88 1 21
HELIX 11 AB2 SER B 90 ASP B 92 5 3
HELIX 12 AB3 ASN B 102 ALA B 104 5 3
HELIX 13 AB4 PRO C 10 VAL C 14 5 5
HELIX 14 AB5 GLY C 17 GLY C 31 1 15
HELIX 15 AB6 PRO C 33 TYR C 36 5 4
HELIX 16 AB7 GLY C 68 ARG C 88 1 21
HELIX 17 AB8 SER C 90 ASP C 92 5 3
HELIX 18 AB9 ASN C 102 ALA C 104 5 3
SHEET 1 AA1 7 SER B 111 THR B 112 0
SHEET 2 AA1 7 VAL B 106 TRP B 108 -1 N TRP B 108 O SER B 111
SHEET 3 AA1 7 VAL A 94 ASP A 100 -1 N ILE A 96 O GLY B 107
SHEET 4 AA1 7 ALA A 57 SER A 63 1 N LEU A 61 O TYR A 99
SHEET 5 AA1 7 MET A 2 THR A 7 -1 N ASN A 6 O LEU A 58
SHEET 6 AA1 7 ALA A 38 VAL A 42 1 O VAL A 42 N VAL A 5
SHEET 7 AA1 7 LEU C 46 PHE C 49 -1 O ALA C 48 N VAL A 39
SHEET 1 AA2 7 LEU A 46 PHE A 49 0
SHEET 2 AA2 7 ALA B 38 VAL B 42 -1 O VAL B 39 N ALA A 48
SHEET 3 AA2 7 MET B 2 THR B 7 1 N VAL B 5 O VAL B 42
SHEET 4 AA2 7 ALA B 57 SER B 63 -1 O HIS B 62 N MET B 2
SHEET 5 AA2 7 VAL B 94 ASP B 100 1 O TYR B 95 N CYS B 59
SHEET 6 AA2 7 VAL C 106 TRP C 108 -1 O GLY C 107 N ILE B 96
SHEET 7 AA2 7 SER C 111 THR C 112 -1 O SER C 111 N TRP C 108
SHEET 1 AA3 7 SER A 111 THR A 112 0
SHEET 2 AA3 7 VAL A 106 TRP A 108 -1 N TRP A 108 O SER A 111
SHEET 3 AA3 7 VAL C 94 ASP C 100 -1 O ILE C 96 N GLY A 107
SHEET 4 AA3 7 ALA C 57 SER C 63 1 N CYS C 59 O ASN C 97
SHEET 5 AA3 7 MET C 2 THR C 7 -1 N ASN C 6 O LEU C 58
SHEET 6 AA3 7 ALA C 38 VAL C 42 1 O VAL C 42 N VAL C 5
SHEET 7 AA3 7 LEU B 46 PHE B 49 -1 N ALA B 48 O VAL C 39
SITE 1 AC1 4 GLY A 68 GLY A 69 ALA A 70 GLN A 71
SITE 1 AC2 11 TYR A 95 ASN A 97 PRO B 1 MET B 2
SITE 2 AC2 11 LYS B 32 TYR B 36 HIS B 62 SER B 63
SITE 3 AC2 11 ILE B 64 MET B 101 VAL B 106
CRYST1 97.425 97.425 105.624 90.00 90.00 120.00 P 31 2 1 18
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010264 0.005926 0.000000 0.00000
SCALE2 0.000000 0.011852 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009468 0.00000