HEADER VIRAL PROTEIN 20-SEP-17 6B2G TITLE P38A MUTANT OF HIV-1 CAPSID PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 133-363; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: NL4-3; SOURCE 5 GENE: GAG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS HIV-1 CAPSID PROTEIN, HEXAMER, P38A MUTANT, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.T.GRES,K.A.KIRBY,S.G.SARAFIANOS REVDAT 4 04-OCT-23 6B2G 1 JRNL REVDAT 3 11-DEC-19 6B2G 1 REMARK REVDAT 2 20-FEB-19 6B2G 1 REMARK REVDAT 1 26-SEP-18 6B2G 0 JRNL AUTH A.T.GRES,K.A.KIRBY,W.M.MCFADDEN,H.DU,D.LIU,C.XU,A.J.BRYER, JRNL AUTH 2 J.R.PERILLA,J.SHI,C.AIKEN,X.FU,P.ZHANG,A.C.FRANCIS, JRNL AUTH 3 G.B.MELIKYAN,S.G.SARAFIANOS JRNL TITL MULTIDISCIPLINARY STUDIES WITH MUTATED HIV-1 CAPSID PROTEINS JRNL TITL 2 REVEAL STRUCTURAL MECHANISMS OF LATTICE STABILIZATION. JRNL REF NAT COMMUN V. 14 5614 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37699872 JRNL DOI 10.1038/S41467-023-41197-7 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1-2575_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 10894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.790 REMARK 3 FREE R VALUE TEST SET COUNT : 631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6486 - 4.1148 1.00 2108 136 0.1944 0.2281 REMARK 3 2 4.1148 - 3.2663 1.00 2065 122 0.2475 0.2325 REMARK 3 3 3.2663 - 2.8535 1.00 2039 133 0.3084 0.3228 REMARK 3 4 2.8535 - 2.5926 1.00 2038 125 0.3403 0.3844 REMARK 3 5 2.5926 - 2.4068 0.99 2013 115 0.3567 0.3794 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1742 REMARK 3 ANGLE : 0.447 2371 REMARK 3 CHIRALITY : 0.037 267 REMARK 3 PLANARITY : 0.004 308 REMARK 3 DIHEDRAL : 12.060 1071 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5018 -11.9192 16.3806 REMARK 3 T TENSOR REMARK 3 T11: 1.2548 T22: 1.0202 REMARK 3 T33: 0.8150 T12: -0.2338 REMARK 3 T13: 0.0110 T23: 0.2594 REMARK 3 L TENSOR REMARK 3 L11: 4.7640 L22: 1.0158 REMARK 3 L33: 0.5915 L12: -2.2116 REMARK 3 L13: 1.7060 L23: -0.8600 REMARK 3 S TENSOR REMARK 3 S11: 2.8395 S12: -0.1953 S13: -1.6151 REMARK 3 S21: 0.9041 S22: 0.0949 S23: 0.1807 REMARK 3 S31: -0.9828 S32: 0.5331 S33: 0.4500 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7622 -16.8195 -3.4878 REMARK 3 T TENSOR REMARK 3 T11: 0.5529 T22: 0.7385 REMARK 3 T33: 1.1926 T12: -0.0093 REMARK 3 T13: 0.1166 T23: 0.3195 REMARK 3 L TENSOR REMARK 3 L11: 0.5651 L22: 2.0088 REMARK 3 L33: 1.0482 L12: 0.9552 REMARK 3 L13: 0.5432 L23: 1.0133 REMARK 3 S TENSOR REMARK 3 S11: -0.1331 S12: 0.6699 S13: 1.4228 REMARK 3 S21: 0.1428 S22: 0.2056 S23: -1.0292 REMARK 3 S31: -0.2265 S32: 0.0642 S33: -0.0067 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2112 -29.1844 3.7228 REMARK 3 T TENSOR REMARK 3 T11: 0.6054 T22: 0.5184 REMARK 3 T33: 0.6738 T12: -0.0633 REMARK 3 T13: 0.1721 T23: 0.0828 REMARK 3 L TENSOR REMARK 3 L11: 0.8517 L22: 3.9801 REMARK 3 L33: 3.1154 L12: -2.4612 REMARK 3 L13: 0.3385 L23: 0.0418 REMARK 3 S TENSOR REMARK 3 S11: -0.3054 S12: 0.2512 S13: -0.0682 REMARK 3 S21: 0.3133 S22: -0.1615 S23: -0.1404 REMARK 3 S31: 0.5395 S32: -0.0299 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5231 -33.7928 22.8462 REMARK 3 T TENSOR REMARK 3 T11: 1.3825 T22: 0.9081 REMARK 3 T33: 0.6685 T12: -0.1267 REMARK 3 T13: 0.1786 T23: 0.0600 REMARK 3 L TENSOR REMARK 3 L11: 0.2186 L22: 0.1361 REMARK 3 L33: 0.2909 L12: 0.0879 REMARK 3 L13: -0.4092 L23: -0.0395 REMARK 3 S TENSOR REMARK 3 S11: 0.0328 S12: 0.2596 S13: -0.4698 REMARK 3 S21: -1.0374 S22: -0.2128 S23: 0.3174 REMARK 3 S31: -0.3634 S32: -0.2348 S33: -0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8006 -24.4873 19.2592 REMARK 3 T TENSOR REMARK 3 T11: 1.3427 T22: 0.8977 REMARK 3 T33: 0.8595 T12: 0.0428 REMARK 3 T13: 0.2088 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: -0.0033 L22: 1.3144 REMARK 3 L33: 0.5703 L12: 0.3049 REMARK 3 L13: -0.2144 L23: -0.6216 REMARK 3 S TENSOR REMARK 3 S11: -0.3396 S12: -1.3704 S13: -0.5642 REMARK 3 S21: 0.9101 S22: 0.6847 S23: 0.1914 REMARK 3 S31: -0.2558 S32: -0.2267 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7819 -29.9220 1.9215 REMARK 3 T TENSOR REMARK 3 T11: 0.6018 T22: 0.7360 REMARK 3 T33: 0.7518 T12: -0.0502 REMARK 3 T13: 0.1175 T23: 0.1827 REMARK 3 L TENSOR REMARK 3 L11: 1.3281 L22: 1.4944 REMARK 3 L33: 0.9905 L12: -0.9727 REMARK 3 L13: -0.0517 L23: -0.9689 REMARK 3 S TENSOR REMARK 3 S11: 0.0509 S12: 0.2786 S13: -0.2877 REMARK 3 S21: 0.6556 S22: -0.4905 S23: -0.4936 REMARK 3 S31: 0.2132 S32: -0.2895 S33: 0.0003 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8512 -29.2600 -19.5870 REMARK 3 T TENSOR REMARK 3 T11: 0.9416 T22: 0.8680 REMARK 3 T33: 0.5871 T12: 0.1720 REMARK 3 T13: 0.0587 T23: 0.1676 REMARK 3 L TENSOR REMARK 3 L11: 0.0310 L22: 0.3379 REMARK 3 L33: 1.0426 L12: -0.1613 REMARK 3 L13: -0.3503 L23: 0.6486 REMARK 3 S TENSOR REMARK 3 S11: 0.2032 S12: 0.9955 S13: 0.3364 REMARK 3 S21: -0.9831 S22: 0.1823 S23: 0.2035 REMARK 3 S31: -0.0285 S32: 0.0243 S33: -0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0886 -24.4941 -13.0389 REMARK 3 T TENSOR REMARK 3 T11: 0.6636 T22: 0.7966 REMARK 3 T33: 0.8431 T12: 0.1871 REMARK 3 T13: 0.1459 T23: 0.4203 REMARK 3 L TENSOR REMARK 3 L11: 0.5881 L22: 0.5904 REMARK 3 L33: 0.3277 L12: 0.5938 REMARK 3 L13: 0.2667 L23: -0.0660 REMARK 3 S TENSOR REMARK 3 S11: 0.6190 S12: 1.4481 S13: 1.8968 REMARK 3 S21: -0.5870 S22: -0.1321 S23: 0.7434 REMARK 3 S31: 0.2469 S32: -0.4907 S33: -0.0827 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3605 -34.5085 -6.4965 REMARK 3 T TENSOR REMARK 3 T11: 0.6340 T22: 0.6324 REMARK 3 T33: 0.6520 T12: 0.1266 REMARK 3 T13: 0.0014 T23: 0.1399 REMARK 3 L TENSOR REMARK 3 L11: 0.3131 L22: 3.0209 REMARK 3 L33: 0.3457 L12: 0.6727 REMARK 3 L13: 0.0980 L23: -0.4451 REMARK 3 S TENSOR REMARK 3 S11: 0.2668 S12: 0.6799 S13: 0.8392 REMARK 3 S21: 0.8159 S22: 0.1391 S23: -0.1151 REMARK 3 S31: 0.9179 S32: -0.0765 S33: -0.0108 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7323 -25.4520 -14.6094 REMARK 3 T TENSOR REMARK 3 T11: 0.6625 T22: 1.4237 REMARK 3 T33: 0.8386 T12: 0.2630 REMARK 3 T13: 0.0664 T23: 0.0592 REMARK 3 L TENSOR REMARK 3 L11: 0.9600 L22: 1.2308 REMARK 3 L33: 0.9902 L12: -0.3399 REMARK 3 L13: -0.2165 L23: 0.0651 REMARK 3 S TENSOR REMARK 3 S11: -0.6136 S12: 0.8725 S13: -0.0032 REMARK 3 S21: -0.2441 S22: 0.1750 S23: -0.6278 REMARK 3 S31: 0.4857 S32: 1.8565 S33: -0.0052 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B2G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000230053. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS 0.5.31 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10898 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.407 REMARK 200 RESOLUTION RANGE LOW (A) : 46.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 1.03800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: 4XFX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, NAI, MIB, GLYCEROL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -421.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 5 REMARK 465 LEU A 6 REMARK 465 GLY A 222 REMARK 465 GLY A 223 REMARK 465 PRO A 224 REMARK 465 GLY A 225 REMARK 465 HIS A 226 REMARK 465 LYS A 227 REMARK 465 ALA A 228 REMARK 465 ARG A 229 REMARK 465 VAL A 230 REMARK 465 LEU A 231 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 7 CG CD OE1 NE2 REMARK 470 GLN A 9 CG CD OE1 NE2 REMARK 470 MET A 10 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 31 -121.00 58.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 312 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XFX RELATED DB: PDB REMARK 900 STRUCTURE OF THE NATIVE FULL-LENGTH HIV-1 CAPSID PROTEIN DBREF 6B2G A 1 231 UNP B6DRA0 B6DRA0_9HIV1 133 363 SEQADV 6B2G ALA A 38 UNP B6DRA0 PRO 170 ENGINEERED MUTATION SEQRES 1 A 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 A 231 ALA ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 A 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE ALA MET SEQRES 4 A 231 PHE SER ALA LEU SER GLU GLY ALA THR PRO GLN ASP LEU SEQRES 5 A 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 A 231 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 A 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 A 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 A 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 A 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 A 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 A 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 A 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 A 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 A 231 ASN TRP MET THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 A 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 A 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 A 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU HET IOD A 301 1 HET IOD A 302 1 HET IOD A 303 1 HET IOD A 304 1 HET IOD A 305 1 HET IOD A 306 1 HET IOD A 307 1 HET IOD A 308 1 HET CL A 309 1 HET CL A 310 1 HET CL A 311 1 HET CL A 312 1 HET CL A 313 1 HETNAM IOD IODIDE ION HETNAM CL CHLORIDE ION FORMUL 2 IOD 8(I 1-) FORMUL 10 CL 5(CL 1-) FORMUL 15 HOH *33(H2 O) HELIX 1 AA1 SER A 16 ALA A 31 1 16 HELIX 2 AA2 SER A 33 SER A 44 1 12 HELIX 3 AA3 THR A 48 THR A 58 1 11 HELIX 4 AA4 HIS A 62 HIS A 84 1 23 HELIX 5 AA5 ARG A 100 ALA A 105 1 6 HELIX 6 AA6 THR A 110 HIS A 120 1 11 HELIX 7 AA7 PRO A 125 SER A 146 1 22 HELIX 8 AA8 SER A 149 ILE A 153 5 5 HELIX 9 AA9 PRO A 160 GLU A 175 1 16 HELIX 10 AB1 SER A 178 ASN A 193 1 16 HELIX 11 AB2 ASN A 195 GLY A 206 1 12 HELIX 12 AB3 THR A 210 CYS A 218 1 9 SHEET 1 AA1 2 ILE A 2 VAL A 3 0 SHEET 2 AA1 2 VAL A 11 HIS A 12 -1 O VAL A 11 N VAL A 3 SSBOND 1 CYS A 198 CYS A 218 1555 1555 2.04 CISPEP 1 ASN A 121 PRO A 122 0 4.16 SITE 1 AC1 2 LYS A 158 GLU A 159 SITE 1 AC2 1 ARG A 18 SITE 1 AC3 1 MET A 144 SITE 1 AC4 1 ASN A 21 SITE 1 AC5 1 SER A 41 SITE 1 AC6 1 ARG A 162 SITE 1 AC7 2 PRO A 17 ARG A 18 SITE 1 AC8 2 HIS A 62 TYR A 145 SITE 1 AC9 1 ARG A 167 SITE 1 AD1 2 ARG A 173 HOH A 422 CRYST1 92.139 92.139 57.481 90.00 90.00 120.00 P 6 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010853 0.006266 0.000000 0.00000 SCALE2 0.000000 0.012532 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017397 0.00000