HEADER METAL TRANSPORT 20-SEP-17 6B2X TITLE APO YIUA CRYSTAL FORM 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUTE-BINDING PERIPLASMIC PROTEIN OF IRON/SIDEROPHORE ABC COMPND 3 TRANSPORTER; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: YIUA, Y2875; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSITION METAL HOMEOSTASIS, YERSINIA PESTIS, CLUSTER A-2, KEYWDS 2 SUBSTRATE-BINDING PROTEIN, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR C.D.RADKA,L.J.DELUCAS,S.G.ALLER REVDAT 2 04-OCT-23 6B2X 1 LINK REVDAT 1 15-NOV-17 6B2X 0 JRNL AUTH C.D.RADKA,D.CHEN,L.J.DELUCAS,S.G.ALLER JRNL TITL THE CRYSTAL STRUCTURE OF THE YERSINIA PESTIS IRON CHAPERONE JRNL TITL 2 YIUA REVEALS A BASIC TRIAD BINDING MOTIF FOR THE CHELATED JRNL TITL 3 METAL. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 73 921 2017 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 29095164 JRNL DOI 10.1107/S2059798317015236 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 34079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.4722 - 5.2973 0.96 2422 152 0.1808 0.2186 REMARK 3 2 5.2973 - 4.2060 0.99 2364 147 0.1585 0.1883 REMARK 3 3 4.2060 - 3.6747 0.99 2299 143 0.1677 0.2243 REMARK 3 4 3.6747 - 3.3389 1.00 2346 146 0.1920 0.2455 REMARK 3 5 3.3389 - 3.0996 0.99 2286 143 0.2097 0.2313 REMARK 3 6 3.0996 - 2.9169 0.99 2287 143 0.2160 0.2621 REMARK 3 7 2.9169 - 2.7709 0.99 2313 143 0.2270 0.2859 REMARK 3 8 2.7709 - 2.6503 0.99 2266 142 0.2243 0.2915 REMARK 3 9 2.6503 - 2.5483 0.98 2265 141 0.2370 0.3553 REMARK 3 10 2.5483 - 2.4603 0.99 2281 143 0.2270 0.3167 REMARK 3 11 2.4603 - 2.3834 0.99 2238 138 0.2247 0.2710 REMARK 3 12 2.3834 - 2.3153 0.99 2323 146 0.2270 0.2745 REMARK 3 13 2.3153 - 2.2544 0.99 2209 137 0.2344 0.3244 REMARK 3 14 2.2544 - 2.1994 0.95 2181 135 0.2356 0.3104 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5258 REMARK 3 ANGLE : 0.992 7134 REMARK 3 CHIRALITY : 0.057 797 REMARK 3 PLANARITY : 0.008 926 REMARK 3 DIHEDRAL : 4.313 3775 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B2X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000230173. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2828 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 V715 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 V715 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34143 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.199 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.24800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.16 REMARK 200 STARTING MODEL: 4MO9 REMARK 200 REMARK 200 REMARK: LONG THIN BARS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 10 MM MES PH 5.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.25750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.78200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.36600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.78200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.25750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.36600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -37 REMARK 465 GLY A -36 REMARK 465 THR A -35 REMARK 465 GLY A -34 REMARK 465 LYS A -33 REMARK 465 GLY A -32 REMARK 465 PHE A -31 REMARK 465 GLY A -30 REMARK 465 VAL A -29 REMARK 465 LYS A -28 REMARK 465 CYS A -27 REMARK 465 VAL A -26 REMARK 465 SER A -25 REMARK 465 LEU A -24 REMARK 465 LYS A -23 REMARK 465 MET A -22 REMARK 465 ALA A -21 REMARK 465 LYS A -20 REMARK 465 GLY A -19 REMARK 465 LEU A -18 REMARK 465 THR A -17 REMARK 465 ILE A -16 REMARK 465 SER A -15 REMARK 465 LEU A -14 REMARK 465 LEU A -13 REMARK 465 PHE A -12 REMARK 465 GLY A -11 REMARK 465 TRP A -10 REMARK 465 ALA A -9 REMARK 465 LEU A -8 REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 SER A -3 REMARK 465 ALA A -2 REMARK 465 LEU A -1 REMARK 465 ALA A 0 REMARK 465 THR A 78 REMARK 465 ALA A 79 REMARK 465 ASP A 80 REMARK 465 HIS A 102 REMARK 465 GLY A 103 REMARK 465 PRO A 104 REMARK 465 GLY A 105 REMARK 465 LYS A 106 REMARK 465 GLY A 107 REMARK 465 SER A 189 REMARK 465 GLU A 190 REMARK 465 GLU A 191 REMARK 465 LYS A 347 REMARK 465 ARG A 348 REMARK 465 GLU A 349 REMARK 465 LEU A 350 REMARK 465 ASP A 351 REMARK 465 LEU A 352 REMARK 465 GLU A 353 REMARK 465 HIS A 354 REMARK 465 HIS A 355 REMARK 465 HIS A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 MET B -37 REMARK 465 GLY B -36 REMARK 465 THR B -35 REMARK 465 GLY B -34 REMARK 465 LYS B -33 REMARK 465 GLY B -32 REMARK 465 PHE B -31 REMARK 465 GLY B -30 REMARK 465 VAL B -29 REMARK 465 LYS B -28 REMARK 465 CYS B -27 REMARK 465 VAL B -26 REMARK 465 SER B -25 REMARK 465 LEU B -24 REMARK 465 LYS B -23 REMARK 465 MET B -22 REMARK 465 ALA B -21 REMARK 465 LYS B -20 REMARK 465 GLY B -19 REMARK 465 LEU B -18 REMARK 465 THR B -17 REMARK 465 ILE B -16 REMARK 465 SER B -15 REMARK 465 LEU B -14 REMARK 465 LEU B -13 REMARK 465 PHE B -12 REMARK 465 GLY B -11 REMARK 465 TRP B -10 REMARK 465 ALA B -9 REMARK 465 LEU B -8 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 SER B -3 REMARK 465 ALA B -2 REMARK 465 LEU B -1 REMARK 465 ALA B 0 REMARK 465 THR B 78 REMARK 465 ALA B 79 REMARK 465 ASP B 80 REMARK 465 SER B 81 REMARK 465 ILE B 82 REMARK 465 SER B 83 REMARK 465 PRO B 84 REMARK 465 GLY B 101 REMARK 465 HIS B 102 REMARK 465 GLY B 103 REMARK 465 PRO B 104 REMARK 465 GLY B 105 REMARK 465 LYS B 106 REMARK 465 GLY B 107 REMARK 465 SER B 108 REMARK 465 ARG B 348 REMARK 465 GLU B 349 REMARK 465 LEU B 350 REMARK 465 ASP B 351 REMARK 465 LEU B 352 REMARK 465 GLU B 353 REMARK 465 HIS B 354 REMARK 465 HIS B 355 REMARK 465 HIS B 356 REMARK 465 HIS B 357 REMARK 465 HIS B 358 REMARK 465 HIS B 359 REMARK 465 HIS B 360 REMARK 465 HIS B 361 REMARK 465 HIS B 362 REMARK 465 HIS B 363 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 47 O HOH A 501 1.23 REMARK 500 O HOH B 681 O HOH B 698 1.48 REMARK 500 NH1 ARG A 139 O HOH A 502 1.60 REMARK 500 O HOH A 618 O HOH A 654 1.64 REMARK 500 O HOH B 598 O HOH B 653 1.68 REMARK 500 O HOH A 650 O HOH A 651 1.75 REMARK 500 O HOH B 650 O HOH B 688 1.80 REMARK 500 O HOH B 656 O HOH B 681 1.82 REMARK 500 NZ LYS B 229 O HOH B 501 1.83 REMARK 500 O GLU A 85 O HOH A 503 1.84 REMARK 500 O HOH B 710 O HOH B 713 1.88 REMARK 500 OD2 ASP A 321 O HOH A 504 1.88 REMARK 500 NE2 GLN A 70 O HOH A 505 1.89 REMARK 500 OE2 GLU B 85 O HOH B 502 1.91 REMARK 500 O HOH A 620 O HOH A 636 1.93 REMARK 500 NH2 ARG A 274 O HOH A 506 1.95 REMARK 500 O ASN B 76 O HOH B 503 1.96 REMARK 500 O HOH A 521 O HOH A 613 1.97 REMARK 500 NE2 GLN A 269 O HOH A 507 1.99 REMARK 500 O HOH A 588 O HOH A 677 2.00 REMARK 500 OE1 GLU B 109 O HOH B 504 2.01 REMARK 500 OE1 GLU A 315 O HOH A 508 2.03 REMARK 500 O HOH A 647 O HOH A 650 2.04 REMARK 500 OE2 GLU A 148 O HOH A 509 2.05 REMARK 500 O HOH A 515 O HOH A 601 2.06 REMARK 500 O HOH A 539 O HOH A 604 2.06 REMARK 500 O ILE B 74 O HOH B 505 2.09 REMARK 500 OE2 GLU A 24 O HOH A 510 2.10 REMARK 500 OE1 GLU B 174 O HOH B 506 2.11 REMARK 500 O HOH A 664 O HOH A 669 2.13 REMARK 500 O HOH B 617 O HOH B 669 2.15 REMARK 500 OD1 ASP B 160 O HOH B 507 2.16 REMARK 500 O HOH B 642 O HOH B 691 2.16 REMARK 500 O LEU A 280 O HOH A 511 2.17 REMARK 500 OH TYR B 29 OD2 ASP B 54 2.17 REMARK 500 OD1 ASN B 212 O HOH B 508 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 631 O HOH A 661 1655 1.81 REMARK 500 O HOH B 655 O HOH B 667 3546 1.98 REMARK 500 O HOH B 662 O HOH B 689 1655 2.00 REMARK 500 O HOH A 688 O HOH B 680 3546 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 186 83.02 -60.64 REMARK 500 CYS A 193 71.82 85.12 REMARK 500 ASN A 200 -131.86 45.62 REMARK 500 ASN A 226 152.80 -47.53 REMARK 500 LEU A 227 -166.88 -62.77 REMARK 500 LEU A 231 30.32 -82.96 REMARK 500 ASP A 249 -36.70 64.45 REMARK 500 ASN A 297 57.38 -147.72 REMARK 500 ASN B 76 89.50 78.42 REMARK 500 LYS B 86 78.57 48.47 REMARK 500 ALA B 117 6.65 -65.46 REMARK 500 GLU B 191 82.62 61.78 REMARK 500 CYS B 193 56.43 81.70 REMARK 500 ASN B 200 -137.58 44.54 REMARK 500 HIS B 287 42.27 -74.59 REMARK 500 ASN B 297 62.67 -154.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 705 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B 706 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 707 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH B 708 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH B 709 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH B 710 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH B 711 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH B 712 DISTANCE = 7.57 ANGSTROMS REMARK 525 HOH B 713 DISTANCE = 7.59 ANGSTROMS REMARK 525 HOH B 714 DISTANCE = 8.30 ANGSTROMS REMARK 525 HOH B 715 DISTANCE = 8.44 ANGSTROMS REMARK 525 HOH B 716 DISTANCE = 9.48 ANGSTROMS REMARK 525 HOH B 717 DISTANCE = 9.75 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 61 OH REMARK 620 2 TYR A 300 OH 109.6 REMARK 620 3 HOH A 581 O 120.7 114.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 61 OH REMARK 620 2 TYR B 300 OH 106.8 REMARK 620 3 HOH B 516 O 123.2 111.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 402 DBREF 6B2X A -37 351 UNP Q8D027 Q8D027_YERPE 1 389 DBREF 6B2X B -37 351 UNP Q8D027 Q8D027_YERPE 1 389 SEQADV 6B2X LEU A 352 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X GLU A 353 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS A 354 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS A 355 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS A 356 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS A 357 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS A 358 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS A 359 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS A 360 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS A 361 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS A 362 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS A 363 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X LEU B 352 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X GLU B 353 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS B 354 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS B 355 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS B 356 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS B 357 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS B 358 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS B 359 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS B 360 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS B 361 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS B 362 UNP Q8D027 EXPRESSION TAG SEQADV 6B2X HIS B 363 UNP Q8D027 EXPRESSION TAG SEQRES 1 A 401 MET GLY THR GLY LYS GLY PHE GLY VAL LYS CYS VAL SER SEQRES 2 A 401 LEU LYS MET ALA LYS GLY LEU THR ILE SER LEU LEU PHE SEQRES 3 A 401 GLY TRP ALA LEU MET ALA GLY SER SER ALA LEU ALA ALA SEQRES 4 A 401 THR VAL THR ASP MET ALA GLY ARG THR VAL THR ILE PRO SEQRES 5 A 401 ALA LYS VAL GLU ARG ILE LEU LEU GLY GLU GLY ARG LEU SEQRES 6 A 401 PHE TYR ALA VAL SER LEU LEU GLU GLY ASN LYS PRO LEU SEQRES 7 A 401 ASP ARG ILE VAL GLY TRP GLN GLY ASP PHE ARG LYS LEU SEQRES 8 A 401 ASP PRO GLN THR TYR ALA ILE TYR LYS ALA LYS PHE PRO SEQRES 9 A 401 GLN ILE ASP GLN ILE PRO LEU ILE GLY ASN THR THR ALA SEQRES 10 A 401 ASP SER ILE SER PRO GLU LYS VAL LEU THR LEU ASN PRO SEQRES 11 A 401 ASP ILE ALA ILE PHE GLY LEU SER GLY HIS GLY PRO GLY SEQRES 12 A 401 LYS GLY SER GLU LEU VAL LYS GLN LEU GLU LYS ALA GLY SEQRES 13 A 401 VAL PRO VAL VAL PHE VAL ASP PHE ARG ASN SER PRO LEU SEQRES 14 A 401 LYS ASN THR LEU PRO SER MET ARG LEU LEU GLY LYS ALA SEQRES 15 A 401 LEU HIS ARG GLU GLN GLN ALA GLU ASN TYR ILE ASN PHE SEQRES 16 A 401 TYR GLN ASP ASN VAL ASP LYS VAL THR ASP ILE THR ASN SEQRES 17 A 401 LYS ILE PRO GLU ASP LYS LYS PRO SER VAL PHE ILE GLU SEQRES 18 A 401 LEU ARG ALA GLY ALA SER GLU GLU CYS CYS GLY THR ALA SEQRES 19 A 401 GLY LYS GLY ASN MET GLY ASP PHE ILE ASP GLN ALA GLY SEQRES 20 A 401 GLY ASN ASN ILE ALA LYS ASN LEU LEU PRO GLY SER LEU SEQRES 21 A 401 GLY THR VAL ASN LEU GLU LYS VAL LEU ALA ALA LYS PRO SEQRES 22 A 401 ASP ILE TYR ILE ALA SER GLY GLY LYS SER PRO GLY SER SEQRES 23 A 401 ASP ALA PRO GLY VAL VAL LEU GLY ALA GLN VAL THR PRO SEQRES 24 A 401 GLU GLN ALA GLN ALA SER LEU GLN LYS ILE LEU GLY ARG SEQRES 25 A 401 LYS GLY ILE ASN THR LEU SER ALA VAL ASN THR GLY HIS SEQRES 26 A 401 SER TYR ALA ILE TRP HIS ASN TYR TYR ASN SER PRO TYR SEQRES 27 A 401 ASN VAL LEU ALA ILE GLN SER PHE ALA LYS TRP PHE TYR SEQRES 28 A 401 PRO GLU GLN PHE ALA ASP LEU ASP PRO LYS LYS THR MET SEQRES 29 A 401 ASP SER LEU TYR SER GLN PHE LEU ALA VAL GLU PRO SER SEQRES 30 A 401 GLY THR TYR TRP ILE GLU ALA LYS ARG GLU LEU ASP LEU SEQRES 31 A 401 GLU HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 401 MET GLY THR GLY LYS GLY PHE GLY VAL LYS CYS VAL SER SEQRES 2 B 401 LEU LYS MET ALA LYS GLY LEU THR ILE SER LEU LEU PHE SEQRES 3 B 401 GLY TRP ALA LEU MET ALA GLY SER SER ALA LEU ALA ALA SEQRES 4 B 401 THR VAL THR ASP MET ALA GLY ARG THR VAL THR ILE PRO SEQRES 5 B 401 ALA LYS VAL GLU ARG ILE LEU LEU GLY GLU GLY ARG LEU SEQRES 6 B 401 PHE TYR ALA VAL SER LEU LEU GLU GLY ASN LYS PRO LEU SEQRES 7 B 401 ASP ARG ILE VAL GLY TRP GLN GLY ASP PHE ARG LYS LEU SEQRES 8 B 401 ASP PRO GLN THR TYR ALA ILE TYR LYS ALA LYS PHE PRO SEQRES 9 B 401 GLN ILE ASP GLN ILE PRO LEU ILE GLY ASN THR THR ALA SEQRES 10 B 401 ASP SER ILE SER PRO GLU LYS VAL LEU THR LEU ASN PRO SEQRES 11 B 401 ASP ILE ALA ILE PHE GLY LEU SER GLY HIS GLY PRO GLY SEQRES 12 B 401 LYS GLY SER GLU LEU VAL LYS GLN LEU GLU LYS ALA GLY SEQRES 13 B 401 VAL PRO VAL VAL PHE VAL ASP PHE ARG ASN SER PRO LEU SEQRES 14 B 401 LYS ASN THR LEU PRO SER MET ARG LEU LEU GLY LYS ALA SEQRES 15 B 401 LEU HIS ARG GLU GLN GLN ALA GLU ASN TYR ILE ASN PHE SEQRES 16 B 401 TYR GLN ASP ASN VAL ASP LYS VAL THR ASP ILE THR ASN SEQRES 17 B 401 LYS ILE PRO GLU ASP LYS LYS PRO SER VAL PHE ILE GLU SEQRES 18 B 401 LEU ARG ALA GLY ALA SER GLU GLU CYS CYS GLY THR ALA SEQRES 19 B 401 GLY LYS GLY ASN MET GLY ASP PHE ILE ASP GLN ALA GLY SEQRES 20 B 401 GLY ASN ASN ILE ALA LYS ASN LEU LEU PRO GLY SER LEU SEQRES 21 B 401 GLY THR VAL ASN LEU GLU LYS VAL LEU ALA ALA LYS PRO SEQRES 22 B 401 ASP ILE TYR ILE ALA SER GLY GLY LYS SER PRO GLY SER SEQRES 23 B 401 ASP ALA PRO GLY VAL VAL LEU GLY ALA GLN VAL THR PRO SEQRES 24 B 401 GLU GLN ALA GLN ALA SER LEU GLN LYS ILE LEU GLY ARG SEQRES 25 B 401 LYS GLY ILE ASN THR LEU SER ALA VAL ASN THR GLY HIS SEQRES 26 B 401 SER TYR ALA ILE TRP HIS ASN TYR TYR ASN SER PRO TYR SEQRES 27 B 401 ASN VAL LEU ALA ILE GLN SER PHE ALA LYS TRP PHE TYR SEQRES 28 B 401 PRO GLU GLN PHE ALA ASP LEU ASP PRO LYS LYS THR MET SEQRES 29 B 401 ASP SER LEU TYR SER GLN PHE LEU ALA VAL GLU PRO SER SEQRES 30 B 401 GLY THR TYR TRP ILE GLU ALA LYS ARG GLU LEU ASP LEU SEQRES 31 B 401 GLU HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS HET CL A 401 1 HET NA A 402 1 HET CL B 401 1 HET NA B 402 1 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 3 CL 2(CL 1-) FORMUL 4 NA 2(NA 1+) FORMUL 7 HOH *408(H2 O) HELIX 1 AA1 GLU A 24 ARG A 26 5 3 HELIX 2 AA2 LEU A 27 GLU A 35 1 9 HELIX 3 AA3 GLY A 48 ASP A 54 1 7 HELIX 4 AA4 ASP A 54 PHE A 65 1 12 HELIX 5 AA5 PRO A 66 ILE A 71 5 6 HELIX 6 AA6 LYS A 86 ASN A 91 5 6 HELIX 7 AA7 GLU A 109 ALA A 117 1 9 HELIX 8 AA8 SER A 129 LEU A 145 1 17 HELIX 9 AA9 ARG A 147 ASN A 170 1 24 HELIX 10 AB1 ASN A 200 ALA A 208 1 9 HELIX 11 AB2 LEU A 227 ALA A 233 5 7 HELIX 12 AB3 THR A 260 LEU A 272 1 13 HELIX 13 AB4 GLY A 276 THR A 279 5 4 HELIX 14 AB5 LEU A 280 THR A 285 1 6 HELIX 15 AB6 ASN A 294 TYR A 300 5 7 HELIX 16 AB7 ASN A 301 TYR A 313 1 13 HELIX 17 AB8 PRO A 314 ALA A 318 5 5 HELIX 18 AB9 ASP A 321 LEU A 334 1 14 HELIX 19 AC1 GLU B 24 ARG B 26 5 3 HELIX 20 AC2 LEU B 27 LEU B 33 1 7 HELIX 21 AC3 GLY B 48 ASP B 54 1 7 HELIX 22 AC4 ASP B 54 PHE B 65 1 12 HELIX 23 AC5 PRO B 66 ILE B 71 5 6 HELIX 24 AC6 LYS B 86 ASN B 91 1 6 HELIX 25 AC7 LEU B 110 ALA B 117 1 8 HELIX 26 AC8 SER B 129 LEU B 145 1 17 HELIX 27 AC9 ARG B 147 ASN B 170 1 24 HELIX 28 AD1 ASN B 200 ALA B 208 1 9 HELIX 29 AD2 ASN B 226 LYS B 234 1 9 HELIX 30 AD3 THR B 260 GLY B 273 1 14 HELIX 31 AD4 GLY B 276 THR B 279 5 4 HELIX 32 AD5 LEU B 280 THR B 285 1 6 HELIX 33 AD6 ASN B 294 TYR B 300 5 7 HELIX 34 AD7 ASN B 301 TYR B 313 1 13 HELIX 35 AD8 ASP B 321 LEU B 334 1 14 SHEET 1 AA1 2 THR A 2 THR A 4 0 SHEET 2 AA1 2 THR A 10 THR A 12 -1 O VAL A 11 N VAL A 3 SHEET 1 AA2 5 LEU A 73 ILE A 74 0 SHEET 2 AA2 5 ILE A 43 GLN A 47 1 N TRP A 46 O ILE A 74 SHEET 3 AA2 5 ILE A 20 LEU A 22 1 N LEU A 22 O GLN A 47 SHEET 4 AA2 5 ILE A 94 GLY A 98 1 O ILE A 96 N LEU A 21 SHEET 5 AA2 5 VAL A 121 VAL A 124 1 O VAL A 124 N PHE A 97 SHEET 1 AA3 5 ASN A 211 ASN A 212 0 SHEET 2 AA3 5 SER A 179 GLU A 183 1 N VAL A 180 O ASN A 211 SHEET 3 AA3 5 ILE A 237 GLY A 242 1 O ILE A 239 N GLU A 183 SHEET 4 AA3 5 SER A 288 TRP A 292 1 O ILE A 291 N ALA A 240 SHEET 5 AA3 5 TRP A 343 GLU A 345 -1 O ILE A 344 N ALA A 290 SHEET 1 AA4 2 GLY A 194 ALA A 196 0 SHEET 2 AA4 2 LEU A 222 THR A 224 -1 O GLY A 223 N THR A 195 SHEET 1 AA5 2 THR B 2 THR B 4 0 SHEET 2 AA5 2 THR B 10 THR B 12 -1 O VAL B 11 N VAL B 3 SHEET 1 AA6 4 ILE B 43 TRP B 46 0 SHEET 2 AA6 4 ILE B 20 LEU B 22 1 N LEU B 22 O GLY B 45 SHEET 3 AA6 4 ILE B 94 GLY B 98 1 O ILE B 94 N LEU B 21 SHEET 4 AA6 4 VAL B 121 VAL B 124 1 O VAL B 122 N ALA B 95 SHEET 1 AA7 5 ASN B 211 ASN B 212 0 SHEET 2 AA7 5 SER B 179 GLU B 183 1 N VAL B 180 O ASN B 211 SHEET 3 AA7 5 ILE B 237 GLY B 242 1 O ILE B 239 N GLU B 183 SHEET 4 AA7 5 SER B 288 TRP B 292 1 O ILE B 291 N ALA B 240 SHEET 5 AA7 5 TRP B 343 GLU B 345 -1 O ILE B 344 N ALA B 290 SHEET 1 AA8 2 GLY B 194 ALA B 196 0 SHEET 2 AA8 2 LEU B 222 THR B 224 -1 O GLY B 223 N THR B 195 SSBOND 1 CYS A 192 CYS A 193 1555 1555 2.05 SSBOND 2 CYS B 192 CYS B 193 1555 1555 2.05 LINK OH TYR A 61 NA NA A 402 1555 1555 2.67 LINK OH TYR A 300 NA NA A 402 1555 1555 2.77 LINK NA NA A 402 O HOH A 581 1555 1555 3.07 LINK OH TYR B 61 NA NA B 402 1555 1555 2.88 LINK OH TYR B 300 NA NA B 402 1555 1555 2.88 LINK NA NA B 402 O HOH B 516 1555 1555 3.02 SITE 1 AC1 2 TYR A 296 HOH A 607 SITE 1 AC2 3 TYR A 61 TYR A 300 HOH A 581 SITE 1 AC3 5 ARG B 26 ARG B 185 HIS B 293 TYR B 296 SITE 2 AC3 5 HOH B 580 SITE 1 AC4 3 TYR B 61 TYR B 300 HOH B 516 CRYST1 40.515 94.732 171.564 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024682 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010556 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005829 0.00000