HEADER TRANSFERASE/INHIBITOR 25-SEP-17 6B3V TITLE PANK3 COMPLEX WITH COMPOUND PZ-2891 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANTOTHENATE KINASE 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 12-370; COMPND 5 SYNONYM: HPANK3,PANTOTHENIC ACID KINASE 3; COMPND 6 EC: 2.7.1.33; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PANK3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PANK, INHIBITOR, COMPLEX, TRANSFERASE, PANTOTHENATE KINASE, KEYWDS 2 TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.W.WHITE,M.YUN REVDAT 3 04-OCT-23 6B3V 1 LINK REVDAT 2 28-NOV-18 6B3V 1 JRNL REVDAT 1 29-AUG-18 6B3V 0 JRNL AUTH L.K.SHARMA,C.SUBRAMANIAN,M.K.YUN,M.W.FRANK,S.W.WHITE, JRNL AUTH 2 C.O.ROCK,R.E.LEE,S.JACKOWSKI JRNL TITL A THERAPEUTIC APPROACH TO PANTOTHENATE KINASE ASSOCIATED JRNL TITL 2 NEURODEGENERATION. JRNL REF NAT COMMUN V. 9 4399 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30352999 JRNL DOI 10.1038/S41467-018-06703-2 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 51447 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.760 REMARK 3 FREE R VALUE TEST SET COUNT : 1932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.3707 - 3.8561 0.98 3635 144 0.1690 0.1713 REMARK 3 2 3.8561 - 3.0615 1.00 3609 143 0.1684 0.1615 REMARK 3 3 3.0615 - 2.6747 1.00 3563 131 0.1802 0.1997 REMARK 3 4 2.6747 - 2.4302 1.00 3572 140 0.1804 0.2135 REMARK 3 5 2.4302 - 2.2561 1.00 3516 141 0.1787 0.2400 REMARK 3 6 2.2561 - 2.1231 1.00 3560 139 0.1771 0.2030 REMARK 3 7 2.1231 - 2.0168 1.00 3516 140 0.1703 0.1854 REMARK 3 8 2.0168 - 1.9290 1.00 3530 137 0.1702 0.2007 REMARK 3 9 1.9290 - 1.8548 1.00 3501 137 0.1846 0.2104 REMARK 3 10 1.8548 - 1.7908 1.00 3525 137 0.1942 0.2364 REMARK 3 11 1.7908 - 1.7348 1.00 3524 135 0.2101 0.2799 REMARK 3 12 1.7348 - 1.6852 1.00 3512 136 0.2144 0.2433 REMARK 3 13 1.6852 - 1.6408 1.00 3514 138 0.2313 0.2437 REMARK 3 14 1.6408 - 1.6008 0.98 3438 134 0.2527 0.2819 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2849 REMARK 3 ANGLE : 0.977 3849 REMARK 3 CHIRALITY : 0.068 427 REMARK 3 PLANARITY : 0.005 485 REMARK 3 DIHEDRAL : 17.445 1655 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 11:369 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1368 -7.9160 5.2916 REMARK 3 T TENSOR REMARK 3 T11: 0.1768 T22: 0.1521 REMARK 3 T33: 0.1311 T12: 0.0025 REMARK 3 T13: -0.0051 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.7205 L22: 1.8154 REMARK 3 L33: 1.4795 L12: 0.2285 REMARK 3 L13: -0.2340 L23: -0.8950 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: -0.0800 S13: -0.0721 REMARK 3 S21: 0.3032 S22: -0.0450 S23: 0.0175 REMARK 3 S31: -0.1237 S32: -0.0462 S33: 0.0304 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 505:505 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.8272 -10.3037 -12.1264 REMARK 3 T TENSOR REMARK 3 T11: 0.2519 T22: 0.2626 REMARK 3 T33: 0.2583 T12: -0.0173 REMARK 3 T13: -0.0272 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 5.4242 L22: 3.2968 REMARK 3 L33: 3.4583 L12: -3.3396 REMARK 3 L13: 1.9293 L23: 0.6668 REMARK 3 S TENSOR REMARK 3 S11: 0.0931 S12: 0.1038 S13: 0.0553 REMARK 3 S21: -0.6444 S22: -0.1683 S23: 0.0837 REMARK 3 S31: 0.4371 S32: 0.2782 S33: 0.0676 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 501:501 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.9261 -10.8934 1.7481 REMARK 3 T TENSOR REMARK 3 T11: 0.1849 T22: 0.1818 REMARK 3 T33: 0.2009 T12: -0.0053 REMARK 3 T13: -0.0025 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 4.2580 L22: 7.9309 REMARK 3 L33: 3.4000 L12: 2.6477 REMARK 3 L13: -0.7516 L23: 0.2620 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: -0.0272 S13: -0.0871 REMARK 3 S21: 0.1375 S22: -0.0184 S23: -0.2139 REMARK 3 S31: -0.0401 S32: 0.1719 S33: 0.0164 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1000230236. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51488 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 32.364 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.72800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3SMS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, AMMONIUM ACETATE, CITRATE, REMARK 280 PH 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.03900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.07800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.07800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.03900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -23.03900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 SER A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 LEU A 6 REMARK 465 VAL A 7 REMARK 465 PRO A 8 REMARK 465 ARG A 9 REMARK 465 GLY A 10 REMARK 465 LYS A 102 REMARK 465 ASN A 103 REMARK 465 PHE A 104 REMARK 465 SER A 105 REMARK 465 THR A 106 REMARK 465 LEU A 107 REMARK 465 GLN A 108 REMARK 465 SER A 370 REMARK 465 ASP A 371 REMARK 465 ASP A 372 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 11 OG REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 GLN A 39 CG CD OE1 NE2 REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 ASP A 101 CG OD1 OD2 REMARK 470 HIS A 132 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 ASP A 203 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 130 -4.18 60.30 REMARK 500 SER A 153 166.48 73.51 REMARK 500 THR A 209 -170.42 -171.90 REMARK 500 VAL A 326 37.04 39.41 REMARK 500 GLU A 354 -105.33 55.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A 501 O3G REMARK 620 2 ANP A 501 O2B 88.4 REMARK 620 3 HOH A 632 O 92.9 178.1 REMARK 620 4 HOH A 646 O 175.6 88.5 90.4 REMARK 620 5 HOH A 653 O 96.7 93.5 84.9 86.6 REMARK 620 6 HOH A 663 O 87.7 94.0 87.5 89.3 171.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7DQ A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TL3 RELATED DB: PDB DBREF 6B3V A 12 370 UNP Q9H999 PANK3_HUMAN 12 370 SEQADV 6B3V MET A -7 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V GLY A -6 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V SER A -5 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V SER A -4 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V HIS A -3 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V HIS A -2 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V HIS A -1 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V HIS A 0 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V HIS A 1 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V HIS A 2 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V SER A 3 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V SER A 4 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V GLY A 5 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V LEU A 6 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V VAL A 7 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V PRO A 8 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V ARG A 9 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V GLY A 10 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V SER A 11 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V ASP A 371 UNP Q9H999 EXPRESSION TAG SEQADV 6B3V ASP A 372 UNP Q9H999 EXPRESSION TAG SEQRES 1 A 380 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 380 LEU VAL PRO ARG GLY SER PRO TRP PHE GLY MET ASP ILE SEQRES 3 A 380 GLY GLY THR LEU VAL LYS LEU SER TYR PHE GLU PRO ILE SEQRES 4 A 380 ASP ILE THR ALA GLU GLU GLU GLN GLU GLU VAL GLU SER SEQRES 5 A 380 LEU LYS SER ILE ARG LYS TYR LEU THR SER ASN VAL ALA SEQRES 6 A 380 TYR GLY SER THR GLY ILE ARG ASP VAL HIS LEU GLU LEU SEQRES 7 A 380 LYS ASP LEU THR LEU PHE GLY ARG ARG GLY ASN LEU HIS SEQRES 8 A 380 PHE ILE ARG PHE PRO THR GLN ASP LEU PRO THR PHE ILE SEQRES 9 A 380 GLN MET GLY ARG ASP LYS ASN PHE SER THR LEU GLN THR SEQRES 10 A 380 VAL LEU CYS ALA THR GLY GLY GLY ALA TYR LYS PHE GLU SEQRES 11 A 380 LYS ASP PHE ARG THR ILE GLY ASN LEU HIS LEU HIS LYS SEQRES 12 A 380 LEU ASP GLU LEU ASP CYS LEU VAL LYS GLY LEU LEU TYR SEQRES 13 A 380 ILE ASP SER VAL SER PHE ASN GLY GLN ALA GLU CYS TYR SEQRES 14 A 380 TYR PHE ALA ASN ALA SER GLU PRO GLU ARG CYS GLN LYS SEQRES 15 A 380 MET PRO PHE ASN LEU ASP ASP PRO TYR PRO LEU LEU VAL SEQRES 16 A 380 VAL ASN ILE GLY SER GLY VAL SER ILE LEU ALA VAL HIS SEQRES 17 A 380 SER LYS ASP ASN TYR LYS ARG VAL THR GLY THR SER LEU SEQRES 18 A 380 GLY GLY GLY THR PHE LEU GLY LEU CYS SER LEU LEU THR SEQRES 19 A 380 GLY CYS GLU SER PHE GLU GLU ALA LEU GLU MET ALA SER SEQRES 20 A 380 LYS GLY ASP SER THR GLN ALA ASP LYS LEU VAL ARG ASP SEQRES 21 A 380 ILE TYR GLY GLY ASP TYR GLU ARG PHE GLY LEU PRO GLY SEQRES 22 A 380 TRP ALA VAL ALA SER SER PHE GLY ASN MET ILE TYR LYS SEQRES 23 A 380 GLU LYS ARG GLU SER VAL SER LYS GLU ASP LEU ALA ARG SEQRES 24 A 380 ALA THR LEU VAL THR ILE THR ASN ASN ILE GLY SER VAL SEQRES 25 A 380 ALA ARG MET CYS ALA VAL ASN GLU LYS ILE ASN ARG VAL SEQRES 26 A 380 VAL PHE VAL GLY ASN PHE LEU ARG VAL ASN THR LEU SER SEQRES 27 A 380 MET LYS LEU LEU ALA TYR ALA LEU ASP TYR TRP SER LYS SEQRES 28 A 380 GLY GLN LEU LYS ALA LEU PHE LEU GLU HIS GLU GLY TYR SEQRES 29 A 380 PHE GLY ALA VAL GLY ALA LEU LEU GLY LEU PRO ASN PHE SEQRES 30 A 380 SER ASP ASP HET ANP A 501 31 HET MG A 502 1 HET EDO A 503 4 HET EDO A 504 4 HET 7DQ A 505 26 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM 7DQ 6-(4-{[4-(PROPAN-2-YL)PHENYL]ACETYL}PIPERAZIN-1-YL) HETNAM 2 7DQ PYRIDAZINE-3-CARBONITRILE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 MG MG 2+ FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 7DQ C20 H23 N5 O FORMUL 7 HOH *148(H2 O) HELIX 1 AA1 THR A 34 GLU A 41 1 8 HELIX 2 AA2 VAL A 42 ASN A 55 1 14 HELIX 3 AA3 VAL A 66 GLU A 69 5 4 HELIX 4 AA4 ASP A 91 ASP A 101 1 11 HELIX 5 AA5 GLY A 115 PHE A 121 1 7 HELIX 6 AA6 PHE A 121 ARG A 126 1 6 HELIX 7 AA7 ASP A 137 SER A 153 1 17 HELIX 8 AA8 GLY A 214 GLY A 227 1 14 HELIX 9 AA9 SER A 230 GLY A 241 1 12 HELIX 10 AB1 ASP A 242 ALA A 246 5 5 HELIX 11 AB2 VAL A 250 GLY A 255 1 6 HELIX 12 AB3 TYR A 258 GLY A 262 5 5 HELIX 13 AB4 PHE A 272 ILE A 276 5 5 HELIX 14 AB5 TYR A 277 VAL A 284 1 8 HELIX 15 AB6 SER A 285 LYS A 313 1 29 HELIX 16 AB7 GLY A 321 ARG A 325 5 5 HELIX 17 AB8 ASN A 327 SER A 342 1 16 HELIX 18 AB9 TYR A 356 GLY A 365 1 10 HELIX 19 AC1 LEU A 366 PHE A 369 5 4 SHEET 1 AA1 4 ALA A 57 TYR A 58 0 SHEET 2 AA1 4 GLY A 62 ARG A 64 -1 O GLY A 62 N TYR A 58 SHEET 3 AA1 4 ARG A 78 PRO A 88 -1 O ARG A 86 N ILE A 63 SHEET 4 AA1 4 LEU A 70 LEU A 75 -1 N LEU A 75 O ARG A 78 SHEET 1 AA2 7 ALA A 57 TYR A 58 0 SHEET 2 AA2 7 GLY A 62 ARG A 64 -1 O GLY A 62 N TYR A 58 SHEET 3 AA2 7 ARG A 78 PRO A 88 -1 O ARG A 86 N ILE A 63 SHEET 4 AA2 7 LEU A 22 PRO A 30 -1 N VAL A 23 O PHE A 87 SHEET 5 AA2 7 TRP A 13 ILE A 18 -1 N ASP A 17 O LYS A 24 SHEET 6 AA2 7 VAL A 110 THR A 114 1 O THR A 114 N ILE A 18 SHEET 7 AA2 7 HIS A 132 LYS A 135 1 O HIS A 132 N LEU A 111 SHEET 1 AA3 7 GLN A 173 PRO A 176 0 SHEET 2 AA3 7 CYS A 160 ALA A 164 -1 N ALA A 164 O GLN A 173 SHEET 3 AA3 7 LYS A 347 LEU A 351 -1 O PHE A 350 N TYR A 161 SHEET 4 AA3 7 ARG A 316 VAL A 320 1 N VAL A 317 O LEU A 349 SHEET 5 AA3 7 LEU A 185 ILE A 190 1 N VAL A 188 O VAL A 318 SHEET 6 AA3 7 VAL A 194 SER A 201 -1 O VAL A 199 N LEU A 185 SHEET 7 AA3 7 ASN A 204 THR A 211 -1 O ASN A 204 N HIS A 200 SHEET 1 AA4 2 LYS A 248 LEU A 249 0 SHEET 2 AA4 2 VAL A 268 SER A 270 -1 O SER A 270 N LYS A 248 LINK O3G ANP A 501 MG MG A 502 1555 1555 2.02 LINK O2B ANP A 501 MG MG A 502 1555 1555 2.01 LINK MG MG A 502 O HOH A 632 1555 1555 2.12 LINK MG MG A 502 O HOH A 646 1555 1555 2.04 LINK MG MG A 502 O HOH A 653 1555 1555 2.14 LINK MG MG A 502 O HOH A 663 1555 1555 2.20 CISPEP 1 TYR A 183 PRO A 184 0 -4.95 SITE 1 AC1 28 GLY A 19 GLY A 20 THR A 21 LEU A 22 SITE 2 AC1 28 LYS A 24 GLU A 138 GLY A 191 SER A 192 SITE 3 AC1 28 GLY A 193 GLY A 215 GLY A 216 PHE A 231 SITE 4 AC1 28 ILE A 253 ASN A 322 PHE A 323 ARG A 325 SITE 5 AC1 28 MG A 502 EDO A 503 HOH A 631 HOH A 632 SITE 6 AC1 28 HOH A 642 HOH A 646 HOH A 653 HOH A 663 SITE 7 AC1 28 HOH A 665 HOH A 669 HOH A 699 HOH A 709 SITE 1 AC2 5 ANP A 501 HOH A 632 HOH A 646 HOH A 653 SITE 2 AC2 5 HOH A 663 SITE 1 AC3 4 LEU A 22 THR A 61 ARG A 86 ANP A 501 SITE 1 AC4 6 TYR A 119 ASP A 257 TYR A 258 GLU A 259 SITE 2 AC4 6 ARG A 260 HOH A 625 SITE 1 AC5 11 VAL A 194 ARG A 207 GLY A 210 VAL A 268 SITE 2 AC5 11 ASN A 299 GLY A 302 SER A 303 ARG A 306 SITE 3 AC5 11 ALA A 337 LEU A 338 TRP A 341 CRYST1 98.874 98.874 69.117 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010114 0.005839 0.000000 0.00000 SCALE2 0.000000 0.011679 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014468 0.00000