HEADER IMMUNE SYSTEM 29-SEP-17 6B5M TITLE STRUCTURE OF PFCSP PEPTIDE 21 WITH HUMAN PROTECTIVE ANTIBODY CIS43 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CIS43 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CIS43 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PFCSP PEPTIDE 21: ASN-PRO-ASP-PRO-ASN-ALA-ASN-PRO-ASN-VAL- COMPND 11 ASP-PRO-ASN; COMPND 12 CHAIN: A; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 14 ORGANISM_TAXID: 5833 KEYWDS MALARIA, PFCSP, VACCINE, ANTIBODIES, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.PANCERA,C.WEIDLE REVDAT 3 25-APR-18 6B5M 1 JRNL REVDAT 2 04-APR-18 6B5M 1 JRNL REVDAT 1 21-MAR-18 6B5M 0 JRNL AUTH N.K.KISALU,A.H.IDRIS,C.WEIDLE,Y.FLORES-GARCIA,B.J.FLYNN, JRNL AUTH 2 B.K.SACK,S.MURPHY,A.SCHON,E.FREIRE,J.R.FRANCICA,A.B.MILLER, JRNL AUTH 3 J.GREGORY,S.MARCH,H.X.LIAO,B.F.HAYNES,K.WIEHE,A.M.TRAMA, JRNL AUTH 4 K.O.SAUNDERS,M.A.GLADDEN,A.MONROE,M.BONSIGNORI,M.KANEKIYO, JRNL AUTH 5 A.K.WHEATLEY,A.B.MCDERMOTT,S.K.FARNEY,G.Y.CHUANG,B.ZHANG, JRNL AUTH 6 N.KC,S.CHAKRAVARTY,P.D.KWONG,P.SINNIS,S.N.BHATIA, JRNL AUTH 7 S.H.I.KAPPE,B.K.L.SIM,S.L.HOFFMAN,F.ZAVALA,M.PANCERA, JRNL AUTH 8 R.A.SEDER JRNL TITL A HUMAN MONOCLONAL ANTIBODY PREVENTS MALARIA INFECTION BY JRNL TITL 2 TARGETING A NEW SITE OF VULNERABILITY ON THE PARASITE. JRNL REF NAT. MED. V. 24 408 2018 JRNL REFN ISSN 1546-170X JRNL PMID 29554083 JRNL DOI 10.1038/NM.4512 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 37095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9975 - 4.1966 0.89 2598 167 0.1653 0.1808 REMARK 3 2 4.1966 - 3.3315 0.76 2191 109 0.1848 0.2312 REMARK 3 3 3.3315 - 2.9105 0.92 2655 138 0.2189 0.2446 REMARK 3 4 2.9105 - 2.6445 0.98 2812 146 0.2157 0.2329 REMARK 3 5 2.6445 - 2.4550 1.00 2836 151 0.2170 0.2550 REMARK 3 6 2.4550 - 2.3103 1.00 2854 166 0.2192 0.2304 REMARK 3 7 2.3103 - 2.1946 0.87 2490 142 0.2285 0.2800 REMARK 3 8 2.1946 - 2.0990 1.00 2880 149 0.2145 0.2606 REMARK 3 9 2.0990 - 2.0182 1.00 2836 148 0.2326 0.2676 REMARK 3 10 2.0182 - 1.9486 1.00 2862 133 0.2393 0.3092 REMARK 3 11 1.9486 - 1.8877 0.94 2685 139 0.3133 0.3693 REMARK 3 12 1.8877 - 1.8337 0.99 2861 136 0.2632 0.3133 REMARK 3 13 1.8337 - 1.7854 0.93 2679 132 0.2790 0.3120 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3540 REMARK 3 ANGLE : 0.715 4832 REMARK 3 CHIRALITY : 0.048 547 REMARK 3 PLANARITY : 0.005 615 REMARK 3 DIHEDRAL : 11.701 2123 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 2 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.3098 -6.7509 166.5857 REMARK 3 T TENSOR REMARK 3 T11: 0.3887 T22: 0.3958 REMARK 3 T33: 0.2897 T12: -0.1032 REMARK 3 T13: -0.0556 T23: 0.0788 REMARK 3 L TENSOR REMARK 3 L11: 2.8151 L22: 1.9401 REMARK 3 L33: 5.1955 L12: 0.5352 REMARK 3 L13: -0.3992 L23: -0.5972 REMARK 3 S TENSOR REMARK 3 S11: 0.2889 S12: -0.2165 S13: -0.2629 REMARK 3 S21: -0.0410 S22: 0.0023 S23: 0.2556 REMARK 3 S31: 0.6920 S32: -0.6626 S33: -0.3314 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 41 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0305 -0.0473 174.2881 REMARK 3 T TENSOR REMARK 3 T11: 0.3368 T22: 0.3898 REMARK 3 T33: 0.2921 T12: 0.0203 REMARK 3 T13: 0.0047 T23: 0.0711 REMARK 3 L TENSOR REMARK 3 L11: 9.3194 L22: 2.5219 REMARK 3 L33: 8.1372 L12: 2.7710 REMARK 3 L13: -2.6051 L23: -1.0072 REMARK 3 S TENSOR REMARK 3 S11: -0.1055 S12: -0.0875 S13: -0.1649 REMARK 3 S21: -0.0653 S22: 0.2346 S23: -0.1304 REMARK 3 S31: -0.2907 S32: -0.9727 S33: -0.4035 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 60 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.5082 -0.8420 170.5610 REMARK 3 T TENSOR REMARK 3 T11: 0.2810 T22: 0.6058 REMARK 3 T33: 0.2924 T12: -0.0211 REMARK 3 T13: -0.0120 T23: 0.1192 REMARK 3 L TENSOR REMARK 3 L11: 8.9873 L22: 6.8217 REMARK 3 L33: 7.3140 L12: 3.1582 REMARK 3 L13: 0.5467 L23: 1.9422 REMARK 3 S TENSOR REMARK 3 S11: 0.2499 S12: -0.2180 S13: 0.2695 REMARK 3 S21: -0.0157 S22: 0.0705 S23: 0.3968 REMARK 3 S31: 0.0078 S32: -1.6770 S33: -0.3551 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 83 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.9591 3.8061 162.3231 REMARK 3 T TENSOR REMARK 3 T11: 0.5397 T22: 0.4069 REMARK 3 T33: 0.3310 T12: 0.0014 REMARK 3 T13: 0.0543 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 3.2310 L22: 6.5261 REMARK 3 L33: 2.5611 L12: -2.1382 REMARK 3 L13: -2.5409 L23: 0.6767 REMARK 3 S TENSOR REMARK 3 S11: 1.0823 S12: 0.1041 S13: 0.4615 REMARK 3 S21: 0.1058 S22: -0.7284 S23: 0.0700 REMARK 3 S31: -0.6634 S32: -0.0805 S33: -0.2659 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 94 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.8921 -10.2482 171.8069 REMARK 3 T TENSOR REMARK 3 T11: 0.5070 T22: 0.2945 REMARK 3 T33: 0.3101 T12: -0.1371 REMARK 3 T13: -0.0581 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 3.7524 L22: 2.8408 REMARK 3 L33: 9.3281 L12: -3.2407 REMARK 3 L13: 4.0853 L23: -2.7081 REMARK 3 S TENSOR REMARK 3 S11: 0.3579 S12: 0.1547 S13: -0.3637 REMARK 3 S21: 0.1586 S22: -0.2706 S23: 0.1465 REMARK 3 S31: 0.5945 S32: 0.3201 S33: -0.0210 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 112 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0224 -12.6272 142.1767 REMARK 3 T TENSOR REMARK 3 T11: 0.2010 T22: 0.2121 REMARK 3 T33: 0.2112 T12: -0.0088 REMARK 3 T13: -0.0329 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.9633 L22: 6.1881 REMARK 3 L33: 1.4862 L12: -2.3782 REMARK 3 L13: -0.4949 L23: 1.1960 REMARK 3 S TENSOR REMARK 3 S11: 0.0986 S12: 0.1361 S13: 0.0474 REMARK 3 S21: -0.2678 S22: -0.1417 S23: 0.0841 REMARK 3 S31: -0.1249 S32: -0.0828 S33: 0.0424 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 204 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9009 -17.9656 139.4013 REMARK 3 T TENSOR REMARK 3 T11: 0.3464 T22: 0.3453 REMARK 3 T33: 0.4203 T12: -0.0073 REMARK 3 T13: -0.0533 T23: -0.0980 REMARK 3 L TENSOR REMARK 3 L11: 7.2522 L22: 2.7597 REMARK 3 L33: 5.0491 L12: -2.7196 REMARK 3 L13: -5.9214 L23: 2.9242 REMARK 3 S TENSOR REMARK 3 S11: -0.0480 S12: 0.8077 S13: -0.2458 REMARK 3 S21: -0.2298 S22: -0.1015 S23: 0.5330 REMARK 3 S31: 0.5686 S32: -0.7879 S33: 0.4582 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3705 -1.7920 177.8718 REMARK 3 T TENSOR REMARK 3 T11: 0.3991 T22: 0.2640 REMARK 3 T33: 0.2885 T12: -0.0037 REMARK 3 T13: -0.0949 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 4.1330 L22: 1.6033 REMARK 3 L33: 5.4507 L12: -1.7096 REMARK 3 L13: -3.9712 L23: 2.4527 REMARK 3 S TENSOR REMARK 3 S11: 0.1179 S12: -0.3046 S13: 0.1423 REMARK 3 S21: -0.0960 S22: 0.1115 S23: -0.0878 REMARK 3 S31: 0.0130 S32: 0.2898 S33: -0.1867 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 33 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3257 -10.3750 174.8973 REMARK 3 T TENSOR REMARK 3 T11: 0.4521 T22: 0.1864 REMARK 3 T33: 0.2252 T12: -0.0200 REMARK 3 T13: -0.0273 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 5.4495 L22: 3.5389 REMARK 3 L33: 6.5439 L12: -0.2892 REMARK 3 L13: 0.2762 L23: 0.5579 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: 0.1022 S13: -0.3510 REMARK 3 S21: 0.0037 S22: 0.0494 S23: -0.0038 REMARK 3 S31: 0.4735 S32: -0.0141 S33: -0.0956 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 76 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2908 -5.4431 148.6647 REMARK 3 T TENSOR REMARK 3 T11: 0.2912 T22: 0.2167 REMARK 3 T33: 0.2640 T12: -0.0172 REMARK 3 T13: -0.0112 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.3347 L22: 0.3744 REMARK 3 L33: 1.6008 L12: -0.0464 REMARK 3 L13: -0.2837 L23: 0.1573 REMARK 3 S TENSOR REMARK 3 S11: 0.0528 S12: 0.0170 S13: -0.0027 REMARK 3 S21: 0.0185 S22: 0.0371 S23: -0.0183 REMARK 3 S31: 0.0547 S32: -0.0098 S33: -0.0923 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 164 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1803 -6.3494 134.9473 REMARK 3 T TENSOR REMARK 3 T11: 0.2765 T22: 0.1646 REMARK 3 T33: 0.2594 T12: -0.0114 REMARK 3 T13: 0.0225 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 3.2924 L22: 0.4292 REMARK 3 L33: 4.5389 L12: -0.8987 REMARK 3 L13: 2.7261 L23: -0.7560 REMARK 3 S TENSOR REMARK 3 S11: -0.0213 S12: 0.2785 S13: 0.0876 REMARK 3 S21: -0.0838 S22: -0.0481 S23: -0.0259 REMARK 3 S31: 0.1601 S32: 0.0550 S33: 0.0619 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.8572 -2.8056 185.7677 REMARK 3 T TENSOR REMARK 3 T11: 0.3544 T22: 0.3319 REMARK 3 T33: 0.2612 T12: -0.0648 REMARK 3 T13: 0.0353 T23: 0.0530 REMARK 3 L TENSOR REMARK 3 L11: 7.6595 L22: 9.8039 REMARK 3 L33: 8.9571 L12: 5.1147 REMARK 3 L13: 4.7859 L23: 8.2366 REMARK 3 S TENSOR REMARK 3 S11: 0.0958 S12: -0.1933 S13: 0.2550 REMARK 3 S21: 0.6037 S22: -0.1351 S23: 0.4094 REMARK 3 S31: 0.3588 S32: -0.4425 S33: 0.1788 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B5M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230314. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37099 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 38.988 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE TRIHYDRATE PH 4.6, REMARK 280 2M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.73850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.93050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.73850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.93050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 402 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN H 1 REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 465 ALA A 14 REMARK 465 ASN A 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU L 105 O3 SO4 L 303 1.26 REMARK 500 HH TYR H 27 O HOH H 409 1.35 REMARK 500 HH21 ARG H 38 O HOH H 401 1.47 REMARK 500 HH TYR L 92 O HOH L 409 1.49 REMARK 500 HD1 HIS H 164 O HOH H 414 1.54 REMARK 500 H GLU L 123 O4 SO4 L 302 1.55 REMARK 500 HH11 ARG L 54 O HOH L 403 1.55 REMARK 500 O HOH L 571 O HOH L 578 1.85 REMARK 500 OE2 GLU L 161 O HOH L 401 1.86 REMARK 500 O HOH L 528 O HOH L 563 1.87 REMARK 500 OE1 GLU H 46 O HOH H 401 1.88 REMARK 500 O HOH H 524 O HOH H 525 1.89 REMARK 500 OG SER L 52 O HOH L 402 1.95 REMARK 500 O HOH H 458 O HOH H 500 1.98 REMARK 500 O PRO H 119 O HOH H 403 1.99 REMARK 500 O HOH H 481 O HOH H 517 1.99 REMARK 500 O THR H 99 O HOH H 404 2.00 REMARK 500 O HOH H 517 O HOH L 576 2.01 REMARK 500 OG SER H 82A O HOH H 405 2.03 REMARK 500 N VAL H 2 O HOH H 406 2.03 REMARK 500 OE2 GLU H 212 O HOH H 407 2.04 REMARK 500 O ASP H 100A O HOH H 408 2.05 REMARK 500 O HOH L 560 O HOH L 571 2.07 REMARK 500 O HOH H 518 O HOH H 526 2.08 REMARK 500 O HOH L 449 O HOH L 553 2.18 REMARK 500 OH TYR H 27 O HOH H 409 2.18 REMARK 500 NH1 ARG L 54 O HOH L 403 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP H 100A OD2 ASP L 1 45410 1.92 REMARK 500 O HOH H 457 O HOH H 507 45510 2.18 REMARK 500 O HOH H 509 O HOH L 567 4559 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE H 63 48.08 -102.70 REMARK 500 THR H 96 69.63 30.84 REMARK 500 ASP H 144 66.23 72.03 REMARK 500 THR H 160 -36.14 -130.53 REMARK 500 ALA L 51 -37.40 75.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH L 581 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH L 582 DISTANCE = 6.63 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6B5L RELATED DB: PDB REMARK 900 6B5L CONTAINS THE SAME ANTIBODY WITH ANOTHER PFCSP PEPTIDE DBREF 6B5M H 1 218 PDB 6B5M 6B5M 1 218 DBREF 6B5M L 1 214 PDB 6B5M 6B5M 1 214 DBREF 6B5M A 1 15 PDB 6B5M 6B5M 1 15 SEQRES 1 H 226 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 226 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 226 TYR THR PHE THR SER TYR ALA ILE HIS TRP VAL ARG GLN SEQRES 4 H 226 ALA PRO GLY GLN ARG LEU GLU TRP MET GLY TRP ILE LYS SEQRES 5 H 226 ALA GLY ASN GLY ASN THR ARG TYR SER GLN LYS PHE GLN SEQRES 6 H 226 ASP ARG VAL THR ILE THR ARG ASP THR SER THR THR THR SEQRES 7 H 226 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 226 ALA VAL TYR TYR CYS ALA LEU LEU THR VAL LEU THR PRO SEQRES 9 H 226 ASP ASP ALA PHE ASP ILE TRP GLY GLN GLY THR MET VAL SEQRES 10 H 226 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 226 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 226 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 226 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 226 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 226 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 226 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 226 LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO SEQRES 18 H 226 LYS SER CYS ASP LYS SEQRES 1 L 220 ASP ILE VAL MET THR GLN SER PRO ASP SER LEU ALA VAL SEQRES 2 L 220 SER LEU GLY GLU ARG ALA THR ILE ASN CYS LYS SER SER SEQRES 3 L 220 GLN SER VAL LEU TYR SER SER ASN ASN LYS ASN TYR LEU SEQRES 4 L 220 ALA TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO ASN LEU SEQRES 5 L 220 LEU ILE TYR TRP ALA SER THR ARG GLN SER GLY VAL PRO SEQRES 6 L 220 ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 220 LEU THR ILE SER SER LEU GLN ALA GLU ASP VAL ALA VAL SEQRES 8 L 220 TYR TYR CYS HIS GLN TYR TYR SER SER PRO LEU THR PHE SEQRES 9 L 220 GLY GLY GLY THR LYS VAL GLU ILE LYS ARG THR VAL ALA SEQRES 10 L 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 11 L 220 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 13 L 220 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 14 L 220 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 15 L 220 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 16 L 220 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 L 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 A 15 ASN PRO ASP PRO ASN ALA ASN PRO ASN VAL ASP PRO ASN SEQRES 2 A 15 ALA ASN HET SO4 H 301 5 HET SO4 L 301 5 HET SO4 L 302 5 HET SO4 L 303 5 HET EDO L 304 10 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 SO4 4(O4 S 2-) FORMUL 8 EDO C2 H6 O2 FORMUL 9 HOH *321(H2 O) HELIX 1 AA1 THR H 28 SER H 31 5 4 HELIX 2 AA2 ARG H 83 THR H 87 5 5 HELIX 3 AA3 SER H 127 LYS H 129 5 3 HELIX 4 AA4 SER H 156 ALA H 158 5 3 HELIX 5 AA5 SER H 187 LEU H 189 5 3 HELIX 6 AA6 LYS H 201 ASN H 204 5 4 HELIX 7 AA7 GLN L 79 VAL L 83 5 5 HELIX 8 AA8 SER L 121 LYS L 126 1 6 HELIX 9 AA9 LYS L 183 HIS L 189 1 7 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 LEU H 82 -1 O ALA H 78 N CYS H 22 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N THR H 70 O TYR H 79 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N GLU H 10 SHEET 3 AA2 6 ALA H 88 LEU H 98 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 ALA H 33 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 GLU H 46 LYS H 52 -1 O MET H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O ARG H 58 N TRP H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N GLU H 10 SHEET 3 AA3 4 ALA H 88 LEU H 98 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 4 ALA H 100C TRP H 103 -1 O ILE H 102 N LEU H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 THR H 131 SER H 132 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 LYS H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 SER L 25 -1 O ASN L 22 N SER L 7 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 SER L 10 SER L 14 0 SHEET 2 AA8 6 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA8 6 ASN L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 THR L 53 ARG L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 SER L 14 0 SHEET 2 AA9 4 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB2 4 ALA L 153 LEU L 154 0 SHEET 2 AB2 4 ALA L 144 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB2 4 VAL L 191 HIS L 198 -1 O GLU L 195 N GLN L 147 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.04 CISPEP 1 PHE H 146 PRO H 147 0 -3.40 CISPEP 2 GLU H 148 PRO H 149 0 -2.32 CISPEP 3 SER L 7 PRO L 8 0 -3.77 CISPEP 4 SER L 94 PRO L 95 0 1.93 CISPEP 5 TYR L 140 PRO L 141 0 1.91 SITE 1 AC1 4 LYS H 52 ASN H 54 HOH H 489 ARG L 211 SITE 1 AC2 3 PRO L 8 ASP L 9 SER L 10 SITE 1 AC3 6 PRO H 123 SER L 121 ASP L 122 GLU L 123 SITE 2 AC3 6 HOH L 408 HOH L 540 SITE 1 AC4 4 LYS L 103 GLU L 105 ARG L 142 HOH L 465 SITE 1 AC5 4 SER L 114 ASN L 138 HOH L 438 HOH L 503 CRYST1 93.477 61.861 75.055 90.00 105.51 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010698 0.000000 0.002969 0.00000 SCALE2 0.000000 0.016165 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013827 0.00000