data_6B79 # _entry.id 6B79 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6B79 pdb_00006b79 10.2210/pdb6b79/pdb WWPDB D_1000230391 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6B79 _pdbx_database_status.recvd_initial_deposition_date 2017-10-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sangwan, S.' 1 ? 'Sawaya, M.R.' 2 ? 'Eisenberg, D.S.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Protein Sci.' _citation.journal_id_ASTM PRCIEI _citation.journal_id_CSD 0795 _citation.journal_id_ISSN 1469-896X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 27 _citation.language ? _citation.page_first 1231 _citation.page_last 1242 _citation.title 'Atomic structures of corkscrew-forming segments of SOD1 reveal varied oligomer conformations.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/pro.3391 _citation.pdbx_database_id_PubMed 29453800 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sangwan, S.' 1 ? primary 'Sawaya, M.R.' 2 ? primary 'Murray, K.A.' 3 ? primary 'Hughes, M.P.' 4 ? primary 'Eisenberg, D.S.' 5 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 127.320 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6B79 _cell.details ? _cell.formula_units_Z ? _cell.length_a 56.940 _cell.length_a_esd ? _cell.length_b 11.640 _cell.length_b_esd ? _cell.length_c 44.930 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6B79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Superoxide dismutase [Cu-Zn]' 1394.546 2 1.15.1.1 ? ? ? 2 non-polymer syn '7-hydroxy-8-[(E)-phenyldiazenyl]naphthalene-1,3-disulfonic acid' 408.406 1 ? ? ? ? 3 water nat water 18.015 16 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Superoxide dismutase 1,hSod1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'K(A8E)KVWGSIKRL' _entity_poly.pdbx_seq_one_letter_code_can KXKVWGSIKRL _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 A8E n 1 3 LYS n 1 4 VAL n 1 5 TRP n 1 6 GLY n 1 7 SER n 1 8 ILE n 1 9 LYS n 1 10 ARG n 1 11 LEU n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 11 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SODC_HUMAN _struct_ref.pdbx_db_accession P00441 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code PVKVWGSIKGL _struct_ref.pdbx_align_begin 29 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6B79 A 1 ? 11 ? P00441 29 ? 39 ? 1 11 2 1 6B79 B 1 ? 11 ? P00441 29 ? 39 ? 1 11 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6B79 LYS A 1 ? UNP P00441 PRO 29 conflict 1 1 1 6B79 ARG A 10 ? UNP P00441 GLY 38 'engineered mutation' 10 2 2 6B79 LYS B 1 ? UNP P00441 PRO 29 conflict 1 3 2 6B79 ARG B 10 ? UNP P00441 GLY 38 'engineered mutation' 10 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A8E 'L-peptide linking' n '(2S)-2-amino-4-bromopent-4-enoic acid' ? 'C5 H8 Br N O2' 194.027 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 ORA non-polymer . '7-hydroxy-8-[(E)-phenyldiazenyl]naphthalene-1,3-disulfonic acid' 'Orange G' 'C16 H12 N2 O7 S2' 408.406 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6B79 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'HEPES pH 7.5, Sodium citrate, 2-Methyl-2,4-pentanediol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-04-03 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 28.250 _reflns.entry_id 6B79 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.800 _reflns.d_resolution_low 35.730 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 2330 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.000 _reflns.percent_possible_obs 96.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.088 _reflns.pdbx_Rmerge_I_obs 0.175 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 4.060 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.889 _reflns.pdbx_scaling_rejects 0 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.211 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 7194 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.981 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.800 1.840 ? 0.480 ? ? ? ? 129 74.100 ? ? ? ? 1.579 ? ? ? ? ? ? ? ? 2.403 ? ? ? ? 1.979 ? ? 1 1 0.215 ? 1.840 1.890 ? 0.960 ? ? ? ? 158 94.000 ? ? ? ? 0.874 ? ? ? ? ? ? ? ? 2.589 ? ? ? ? 1.090 ? ? 2 1 0.463 ? 1.890 1.950 ? 1.320 ? ? ? ? 179 98.900 ? ? ? ? 0.804 ? ? ? ? ? ? ? ? 2.855 ? ? ? ? 0.986 ? ? 3 1 0.586 ? 1.950 2.010 ? 1.700 ? ? ? ? 146 98.600 ? ? ? ? 0.600 ? ? ? ? ? ? ? ? 3.158 ? ? ? ? 0.727 ? ? 4 1 0.707 ? 2.010 2.070 ? 2.030 ? ? ? ? 146 100.000 ? ? ? ? 0.568 ? ? ? ? ? ? ? ? 3.356 ? ? ? ? 0.678 ? ? 5 1 0.605 ? 2.070 2.150 ? 2.300 ? ? ? ? 145 99.300 ? ? ? ? 0.482 ? ? ? ? ? ? ? ? 3.262 ? ? ? ? 0.581 ? ? 6 1 0.742 ? 2.150 2.230 ? 2.870 ? ? ? ? 153 99.400 ? ? ? ? 0.408 ? ? ? ? ? ? ? ? 3.340 ? ? ? ? 0.488 ? ? 7 1 0.842 ? 2.230 2.320 ? 3.600 ? ? ? ? 140 100.000 ? ? ? ? 0.291 ? ? ? ? ? ? ? ? 3.221 ? ? ? ? 0.352 ? ? 8 1 0.879 ? 2.320 2.420 ? 3.650 ? ? ? ? 135 97.100 ? ? ? ? 0.303 ? ? ? ? ? ? ? ? 3.311 ? ? ? ? 0.365 ? ? 9 1 0.873 ? 2.420 2.540 ? 4.070 ? ? ? ? 122 100.000 ? ? ? ? 0.236 ? ? ? ? ? ? ? ? 3.295 ? ? ? ? 0.284 ? ? 10 1 0.952 ? 2.540 2.680 ? 3.920 ? ? ? ? 121 100.000 ? ? ? ? 0.264 ? ? ? ? ? ? ? ? 3.240 ? ? ? ? 0.322 ? ? 11 1 0.935 ? 2.680 2.840 ? 4.990 ? ? ? ? 126 100.00 ? ? ? ? 0.205 ? ? ? ? ? ? ? ? 3.246 ? ? ? ? 0.247 ? ? 12 1 0.937 ? 2.840 3.040 ? 6.380 ? ? ? ? 107 95.500 ? ? ? ? 0.129 ? ? ? ? ? ? ? ? 3.280 ? ? ? ? 0.154 ? ? 13 1 0.989 ? 3.040 3.280 ? 7.560 ? ? ? ? 99 99.000 ? ? ? ? 0.104 ? ? ? ? ? ? ? ? 3.040 ? ? ? ? 0.128 ? ? 14 1 0.983 ? 3.280 3.590 ? 7.850 ? ? ? ? 102 98.100 ? ? ? ? 0.121 ? ? ? ? ? ? ? ? 3.196 ? ? ? ? 0.145 ? ? 15 1 0.980 ? 3.590 4.020 ? 8.540 ? ? ? ? 85 97.700 ? ? ? ? 0.099 ? ? ? ? ? ? ? ? 3.129 ? ? ? ? 0.117 ? ? 16 1 0.980 ? 4.020 4.640 ? 9.220 ? ? ? ? 74 97.400 ? ? ? ? 0.091 ? ? ? ? ? ? ? ? 3.054 ? ? ? ? 0.108 ? ? 17 1 0.977 ? 4.640 5.680 ? 8.930 ? ? ? ? 77 98.700 ? ? ? ? 0.126 ? ? ? ? ? ? ? ? 3.000 ? ? ? ? 0.151 ? ? 18 1 0.967 ? 5.680 8.030 ? 8.780 ? ? ? ? 47 95.900 ? ? ? ? 0.086 ? ? ? ? ? ? ? ? 2.702 ? ? ? ? 0.103 ? ? 19 1 0.990 ? 8.030 35.730 ? 9.080 ? ? ? ? 39 95.100 ? ? ? ? 0.068 ? ? ? ? ? ? ? ? 2.564 ? ? ? ? 0.091 ? ? 20 1 0.982 ? # _refine.aniso_B[1][1] -5.9875 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 7.2771 _refine.aniso_B[2][2] 7.0883 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -1.1008 _refine.B_iso_max 88.550 _refine.B_iso_mean 30.0800 _refine.B_iso_min 14.800 _refine.correlation_coeff_Fo_to_Fc 0.9087 _refine.correlation_coeff_Fo_to_Fc_free 0.9164 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6B79 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.8000 _refine.ls_d_res_low 35.7300 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2327 _refine.ls_number_reflns_R_free 223 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.9000 _refine.ls_percent_reflns_R_free 9.5800 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2337 _refine.ls_R_factor_R_free 0.2670 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2303 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5DLI _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.1510 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.1580 _refine.pdbx_overall_SU_R_Blow_DPI 0.1830 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI 0.1680 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 6B79 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.298 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.8000 _refine_hist.d_res_low 35.7300 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 16 _refine_hist.number_atoms_total 231 _refine_hist.pdbx_number_residues_total 22 _refine_hist.pdbx_B_iso_mean_ligand 24.65 _refine_hist.pdbx_B_iso_mean_solvent 35.77 _refine_hist.pdbx_number_atoms_protein 188 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? ? ? 80 ? t_dihedral_angle_d 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? 2 ? t_trig_c_planes 2.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 29 ? t_gen_planes 5.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 219 ? t_it 20.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_nbd ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? 22 ? t_chiral_improper_torsion 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 274 ? t_ideal_dist_contact 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? 0.010 ? 219 ? t_bond_d 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 1.250 ? 294 ? t_angle_deg 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 2.770 ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 17.030 ? ? ? t_other_torsion ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.8000 _refine_ls_shell.d_res_low 2.0100 _refine_ls_shell.number_reflns_all 622 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 62 _refine_ls_shell.number_reflns_R_work 560 _refine_ls_shell.percent_reflns_obs 97.9000 _refine_ls_shell.percent_reflns_R_free 9.9700 _refine_ls_shell.R_factor_all 0.2764 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3159 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2727 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6B79 _struct.title 'Curved pair of sheets formed from SOD1 residues 28-38 with familial mutation G37R.' _struct.pdbx_model_details 'amyloid-related oligomer' _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6B79 _struct_keywords.text 'amyloid fibril, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LYS 1 C ? ? ? 1_555 A A8E 2 N ? ? A LYS 1 A A8E 2 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale2 covale both ? A A8E 2 C ? ? ? 1_555 A LYS 3 N ? ? A A8E 2 A LYS 3 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale3 covale both ? B LYS 1 C ? ? ? 1_555 B A8E 2 N ? ? B LYS 1 B A8E 2 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale4 covale both ? B A8E 2 C ? ? ? 1_555 B LYS 3 N ? ? B A8E 2 B LYS 3 1_555 ? ? ? ? ? ? ? 1.339 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 4 ? GLY A 6 ? VAL A 4 GLY A 6 AA1 2 VAL B 4 ? GLY B 6 ? VAL B 4 GLY B 6 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id GLY _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 6 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id GLY _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 6 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 4 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 4 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ORA _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 11 _struct_site.details 'binding site for residue ORA A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 LYS A 3 ? LYS A 3 . ? 1_555 ? 2 AC1 11 VAL A 4 ? VAL A 4 . ? 1_555 ? 3 AC1 11 TRP A 5 ? TRP A 5 . ? 2_555 ? 4 AC1 11 TRP A 5 ? TRP A 5 . ? 1_555 ? 5 AC1 11 LYS A 9 ? LYS A 9 . ? 3_455 ? 6 AC1 11 HOH D . ? HOH A 201 . ? 1_555 ? 7 AC1 11 HOH D . ? HOH A 203 . ? 1_555 ? 8 AC1 11 LYS B 3 ? LYS B 3 . ? 2_565 ? 9 AC1 11 TRP B 5 ? TRP B 5 . ? 1_555 ? 10 AC1 11 TRP B 5 ? TRP B 5 . ? 1_565 ? 11 AC1 11 GLY B 6 ? GLY B 6 . ? 1_555 ? # _atom_sites.entry_id 6B79 _atom_sites.fract_transf_matrix[1][1] 0.017562 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.013389 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.085911 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027987 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 A8E 2 2 2 A8E A8E A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 TRP 5 5 5 TRP TRP A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 LEU 11 11 11 LEU LEU A . n B 1 1 LYS 1 1 1 LYS LYS B . n B 1 2 A8E 2 2 2 A8E A8E B . n B 1 3 LYS 3 3 3 LYS LYS B . n B 1 4 VAL 4 4 4 VAL VAL B . n B 1 5 TRP 5 5 5 TRP TRP B . n B 1 6 GLY 6 6 6 GLY GLY B . n B 1 7 SER 7 7 7 SER SER B . n B 1 8 ILE 8 8 8 ILE ILE B . n B 1 9 LYS 9 9 9 LYS LYS B . n B 1 10 ARG 10 10 10 ARG ARG B . n B 1 11 LEU 11 11 11 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ORA 1 101 1 ORA ORA A . D 3 HOH 1 201 9 HOH HOH A . D 3 HOH 2 202 11 HOH HOH A . D 3 HOH 3 203 17 HOH HOH A . D 3 HOH 4 204 8 HOH HOH A . D 3 HOH 5 205 7 HOH HOH A . D 3 HOH 6 206 4 HOH HOH A . D 3 HOH 7 207 16 HOH HOH A . D 3 HOH 8 208 15 HOH HOH A . E 3 HOH 1 101 5 HOH HOH B . E 3 HOH 2 102 14 HOH HOH B . E 3 HOH 3 103 3 HOH HOH B . E 3 HOH 4 104 12 HOH HOH B . E 3 HOH 5 105 6 HOH HOH B . E 3 HOH 6 106 10 HOH HOH B . E 3 HOH 7 107 2 HOH HOH B . E 3 HOH 8 108 13 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A A8E 2 A A8E 2 ? VAL 'modified residue' 2 B A8E 2 B A8E 2 ? VAL 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 11.6400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 2_565 -x,y+1,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 11.6400000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-05-30 2 'Structure model' 1 1 2018-07-18 3 'Structure model' 1 2 2019-11-20 4 'Structure model' 1 3 2020-01-15 5 'Structure model' 1 4 2023-10-04 6 'Structure model' 1 5 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Data collection' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Refinement description' 8 6 'Structure model' 'Data collection' 9 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_audit_support 3 4 'Structure model' reflns_shell 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 7 5 'Structure model' pdbx_initial_refinement_model 8 6 'Structure model' chem_comp_atom 9 6 'Structure model' chem_comp_bond 10 6 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_pdbx_audit_support.funding_organization' 5 4 'Structure model' '_reflns_shell.percent_possible_all' 6 5 'Structure model' '_database_2.pdbx_DOI' 7 5 'Structure model' '_database_2.pdbx_database_accession' 8 6 'Structure model' '_chem_comp_atom.atom_id' 9 6 'Structure model' '_chem_comp_bond.atom_id_2' 10 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.10.0 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A8E O O N N 1 A8E C C N N 2 A8E N N N N 3 A8E OXT O N N 4 A8E BR BR N N 5 A8E CA C N S 6 A8E CB C N N 7 A8E CG C N N 8 A8E CD1 C N N 9 A8E H H N N 10 A8E H2 H N N 11 A8E HXT H N N 12 A8E HA H N N 13 A8E HB H N N 14 A8E HBA H N N 15 A8E HD1 H N N 16 A8E HD1A H N N 17 ARG N N N N 18 ARG CA C N S 19 ARG C C N N 20 ARG O O N N 21 ARG CB C N N 22 ARG CG C N N 23 ARG CD C N N 24 ARG NE N N N 25 ARG CZ C N N 26 ARG NH1 N N N 27 ARG NH2 N N N 28 ARG OXT O N N 29 ARG H H N N 30 ARG H2 H N N 31 ARG HA H N N 32 ARG HB2 H N N 33 ARG HB3 H N N 34 ARG HG2 H N N 35 ARG HG3 H N N 36 ARG HD2 H N N 37 ARG HD3 H N N 38 ARG HE H N N 39 ARG HH11 H N N 40 ARG HH12 H N N 41 ARG HH21 H N N 42 ARG HH22 H N N 43 ARG HXT H N N 44 GLY N N N N 45 GLY CA C N N 46 GLY C C N N 47 GLY O O N N 48 GLY OXT O N N 49 GLY H H N N 50 GLY H2 H N N 51 GLY HA2 H N N 52 GLY HA3 H N N 53 GLY HXT H N N 54 HOH O O N N 55 HOH H1 H N N 56 HOH H2 H N N 57 ILE N N N N 58 ILE CA C N S 59 ILE C C N N 60 ILE O O N N 61 ILE CB C N S 62 ILE CG1 C N N 63 ILE CG2 C N N 64 ILE CD1 C N N 65 ILE OXT O N N 66 ILE H H N N 67 ILE H2 H N N 68 ILE HA H N N 69 ILE HB H N N 70 ILE HG12 H N N 71 ILE HG13 H N N 72 ILE HG21 H N N 73 ILE HG22 H N N 74 ILE HG23 H N N 75 ILE HD11 H N N 76 ILE HD12 H N N 77 ILE HD13 H N N 78 ILE HXT H N N 79 LEU N N N N 80 LEU CA C N S 81 LEU C C N N 82 LEU O O N N 83 LEU CB C N N 84 LEU CG C N N 85 LEU CD1 C N N 86 LEU CD2 C N N 87 LEU OXT O N N 88 LEU H H N N 89 LEU H2 H N N 90 LEU HA H N N 91 LEU HB2 H N N 92 LEU HB3 H N N 93 LEU HG H N N 94 LEU HD11 H N N 95 LEU HD12 H N N 96 LEU HD13 H N N 97 LEU HD21 H N N 98 LEU HD22 H N N 99 LEU HD23 H N N 100 LEU HXT H N N 101 LYS N N N N 102 LYS CA C N S 103 LYS C C N N 104 LYS O O N N 105 LYS CB C N N 106 LYS CG C N N 107 LYS CD C N N 108 LYS CE C N N 109 LYS NZ N N N 110 LYS OXT O N N 111 LYS H H N N 112 LYS H2 H N N 113 LYS HA H N N 114 LYS HB2 H N N 115 LYS HB3 H N N 116 LYS HG2 H N N 117 LYS HG3 H N N 118 LYS HD2 H N N 119 LYS HD3 H N N 120 LYS HE2 H N N 121 LYS HE3 H N N 122 LYS HZ1 H N N 123 LYS HZ2 H N N 124 LYS HZ3 H N N 125 LYS HXT H N N 126 ORA C1 C Y N 127 ORA N1 N N N 128 ORA O1 O N N 129 ORA S1 S N N 130 ORA C2 C Y N 131 ORA N2 N N N 132 ORA O2 O N N 133 ORA S2 S N N 134 ORA C3 C Y N 135 ORA O3 O N N 136 ORA C4 C Y N 137 ORA O4 O N N 138 ORA C5 C Y N 139 ORA O5 O N N 140 ORA C6 C Y N 141 ORA O6 O N N 142 ORA C7 C Y N 143 ORA O7 O N N 144 ORA C8 C Y N 145 ORA C9 C Y N 146 ORA C10 C Y N 147 ORA C11 C Y N 148 ORA C12 C Y N 149 ORA C13 C Y N 150 ORA C14 C Y N 151 ORA C15 C Y N 152 ORA C16 C Y N 153 ORA H1 H N N 154 ORA H2 H N N 155 ORA H3 H N N 156 ORA H4 H N N 157 ORA H5 H N N 158 ORA H6 H N N 159 ORA H7 H N N 160 ORA HO7 H N N 161 ORA H8 H N N 162 ORA H9 H N N 163 ORA H11 H N N 164 ORA H12 H N N 165 PRO N N N N 166 PRO CA C N S 167 PRO C C N N 168 PRO O O N N 169 PRO CB C N N 170 PRO CG C N N 171 PRO CD C N N 172 PRO OXT O N N 173 PRO H H N N 174 PRO HA H N N 175 PRO HB2 H N N 176 PRO HB3 H N N 177 PRO HG2 H N N 178 PRO HG3 H N N 179 PRO HD2 H N N 180 PRO HD3 H N N 181 PRO HXT H N N 182 SER N N N N 183 SER CA C N S 184 SER C C N N 185 SER O O N N 186 SER CB C N N 187 SER OG O N N 188 SER OXT O N N 189 SER H H N N 190 SER H2 H N N 191 SER HA H N N 192 SER HB2 H N N 193 SER HB3 H N N 194 SER HG H N N 195 SER HXT H N N 196 TRP N N N N 197 TRP CA C N S 198 TRP C C N N 199 TRP O O N N 200 TRP CB C N N 201 TRP CG C Y N 202 TRP CD1 C Y N 203 TRP CD2 C Y N 204 TRP NE1 N Y N 205 TRP CE2 C Y N 206 TRP CE3 C Y N 207 TRP CZ2 C Y N 208 TRP CZ3 C Y N 209 TRP CH2 C Y N 210 TRP OXT O N N 211 TRP H H N N 212 TRP H2 H N N 213 TRP HA H N N 214 TRP HB2 H N N 215 TRP HB3 H N N 216 TRP HD1 H N N 217 TRP HE1 H N N 218 TRP HE3 H N N 219 TRP HZ2 H N N 220 TRP HZ3 H N N 221 TRP HH2 H N N 222 TRP HXT H N N 223 VAL N N N N 224 VAL CA C N S 225 VAL C C N N 226 VAL O O N N 227 VAL CB C N N 228 VAL CG1 C N N 229 VAL CG2 C N N 230 VAL OXT O N N 231 VAL H H N N 232 VAL H2 H N N 233 VAL HA H N N 234 VAL HB H N N 235 VAL HG11 H N N 236 VAL HG12 H N N 237 VAL HG13 H N N 238 VAL HG21 H N N 239 VAL HG22 H N N 240 VAL HG23 H N N 241 VAL HXT H N N 242 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A8E OXT C sing N N 1 A8E CA C sing N N 2 A8E C O doub N N 3 A8E N CA sing N N 4 A8E N H sing N N 5 A8E N H2 sing N N 6 A8E OXT HXT sing N N 7 A8E CG BR sing N N 8 A8E CA CB sing N N 9 A8E CA HA sing N N 10 A8E CG CB sing N N 11 A8E CB HB sing N N 12 A8E CB HBA sing N N 13 A8E CD1 CG doub N N 14 A8E CD1 HD1 sing N N 15 A8E CD1 HD1A sing N N 16 ARG N CA sing N N 17 ARG N H sing N N 18 ARG N H2 sing N N 19 ARG CA C sing N N 20 ARG CA CB sing N N 21 ARG CA HA sing N N 22 ARG C O doub N N 23 ARG C OXT sing N N 24 ARG CB CG sing N N 25 ARG CB HB2 sing N N 26 ARG CB HB3 sing N N 27 ARG CG CD sing N N 28 ARG CG HG2 sing N N 29 ARG CG HG3 sing N N 30 ARG CD NE sing N N 31 ARG CD HD2 sing N N 32 ARG CD HD3 sing N N 33 ARG NE CZ sing N N 34 ARG NE HE sing N N 35 ARG CZ NH1 sing N N 36 ARG CZ NH2 doub N N 37 ARG NH1 HH11 sing N N 38 ARG NH1 HH12 sing N N 39 ARG NH2 HH21 sing N N 40 ARG NH2 HH22 sing N N 41 ARG OXT HXT sing N N 42 GLY N CA sing N N 43 GLY N H sing N N 44 GLY N H2 sing N N 45 GLY CA C sing N N 46 GLY CA HA2 sing N N 47 GLY CA HA3 sing N N 48 GLY C O doub N N 49 GLY C OXT sing N N 50 GLY OXT HXT sing N N 51 HOH O H1 sing N N 52 HOH O H2 sing N N 53 ILE N CA sing N N 54 ILE N H sing N N 55 ILE N H2 sing N N 56 ILE CA C sing N N 57 ILE CA CB sing N N 58 ILE CA HA sing N N 59 ILE C O doub N N 60 ILE C OXT sing N N 61 ILE CB CG1 sing N N 62 ILE CB CG2 sing N N 63 ILE CB HB sing N N 64 ILE CG1 CD1 sing N N 65 ILE CG1 HG12 sing N N 66 ILE CG1 HG13 sing N N 67 ILE CG2 HG21 sing N N 68 ILE CG2 HG22 sing N N 69 ILE CG2 HG23 sing N N 70 ILE CD1 HD11 sing N N 71 ILE CD1 HD12 sing N N 72 ILE CD1 HD13 sing N N 73 ILE OXT HXT sing N N 74 LEU N CA sing N N 75 LEU N H sing N N 76 LEU N H2 sing N N 77 LEU CA C sing N N 78 LEU CA CB sing N N 79 LEU CA HA sing N N 80 LEU C O doub N N 81 LEU C OXT sing N N 82 LEU CB CG sing N N 83 LEU CB HB2 sing N N 84 LEU CB HB3 sing N N 85 LEU CG CD1 sing N N 86 LEU CG CD2 sing N N 87 LEU CG HG sing N N 88 LEU CD1 HD11 sing N N 89 LEU CD1 HD12 sing N N 90 LEU CD1 HD13 sing N N 91 LEU CD2 HD21 sing N N 92 LEU CD2 HD22 sing N N 93 LEU CD2 HD23 sing N N 94 LEU OXT HXT sing N N 95 LYS N CA sing N N 96 LYS N H sing N N 97 LYS N H2 sing N N 98 LYS CA C sing N N 99 LYS CA CB sing N N 100 LYS CA HA sing N N 101 LYS C O doub N N 102 LYS C OXT sing N N 103 LYS CB CG sing N N 104 LYS CB HB2 sing N N 105 LYS CB HB3 sing N N 106 LYS CG CD sing N N 107 LYS CG HG2 sing N N 108 LYS CG HG3 sing N N 109 LYS CD CE sing N N 110 LYS CD HD2 sing N N 111 LYS CD HD3 sing N N 112 LYS CE NZ sing N N 113 LYS CE HE2 sing N N 114 LYS CE HE3 sing N N 115 LYS NZ HZ1 sing N N 116 LYS NZ HZ2 sing N N 117 LYS NZ HZ3 sing N N 118 LYS OXT HXT sing N N 119 ORA C1 C2 doub Y N 120 ORA C1 C3 sing Y N 121 ORA C1 H1 sing N N 122 ORA N1 N2 doub N N 123 ORA N1 C12 sing N N 124 ORA O1 S1 sing N N 125 ORA S1 O3 doub N N 126 ORA S1 O4 doub N N 127 ORA S1 C15 sing N N 128 ORA C2 C5 sing Y N 129 ORA C2 H2 sing N N 130 ORA N2 C13 sing N N 131 ORA O2 S2 sing N N 132 ORA S2 O5 doub N N 133 ORA S2 O6 doub N N 134 ORA S2 C16 sing N N 135 ORA C3 C6 doub Y N 136 ORA C3 H3 sing N N 137 ORA C4 C7 doub Y N 138 ORA C4 C10 sing Y N 139 ORA C4 H4 sing N N 140 ORA C5 C12 doub Y N 141 ORA C5 H5 sing N N 142 ORA C6 C12 sing Y N 143 ORA C6 H6 sing N N 144 ORA C7 C14 sing Y N 145 ORA C7 H7 sing N N 146 ORA O7 C14 sing N N 147 ORA O7 HO7 sing N N 148 ORA C8 C10 doub Y N 149 ORA C8 C15 sing Y N 150 ORA C8 H8 sing N N 151 ORA C9 C15 doub Y N 152 ORA C9 C16 sing Y N 153 ORA C9 H9 sing N N 154 ORA C10 C11 sing Y N 155 ORA C11 C13 sing Y N 156 ORA C11 C16 doub Y N 157 ORA C13 C14 doub Y N 158 ORA O1 H11 sing N N 159 ORA O2 H12 sing N N 160 PRO N CA sing N N 161 PRO N CD sing N N 162 PRO N H sing N N 163 PRO CA C sing N N 164 PRO CA CB sing N N 165 PRO CA HA sing N N 166 PRO C O doub N N 167 PRO C OXT sing N N 168 PRO CB CG sing N N 169 PRO CB HB2 sing N N 170 PRO CB HB3 sing N N 171 PRO CG CD sing N N 172 PRO CG HG2 sing N N 173 PRO CG HG3 sing N N 174 PRO CD HD2 sing N N 175 PRO CD HD3 sing N N 176 PRO OXT HXT sing N N 177 SER N CA sing N N 178 SER N H sing N N 179 SER N H2 sing N N 180 SER CA C sing N N 181 SER CA CB sing N N 182 SER CA HA sing N N 183 SER C O doub N N 184 SER C OXT sing N N 185 SER CB OG sing N N 186 SER CB HB2 sing N N 187 SER CB HB3 sing N N 188 SER OG HG sing N N 189 SER OXT HXT sing N N 190 TRP N CA sing N N 191 TRP N H sing N N 192 TRP N H2 sing N N 193 TRP CA C sing N N 194 TRP CA CB sing N N 195 TRP CA HA sing N N 196 TRP C O doub N N 197 TRP C OXT sing N N 198 TRP CB CG sing N N 199 TRP CB HB2 sing N N 200 TRP CB HB3 sing N N 201 TRP CG CD1 doub Y N 202 TRP CG CD2 sing Y N 203 TRP CD1 NE1 sing Y N 204 TRP CD1 HD1 sing N N 205 TRP CD2 CE2 doub Y N 206 TRP CD2 CE3 sing Y N 207 TRP NE1 CE2 sing Y N 208 TRP NE1 HE1 sing N N 209 TRP CE2 CZ2 sing Y N 210 TRP CE3 CZ3 doub Y N 211 TRP CE3 HE3 sing N N 212 TRP CZ2 CH2 doub Y N 213 TRP CZ2 HZ2 sing N N 214 TRP CZ3 CH2 sing Y N 215 TRP CZ3 HZ3 sing N N 216 TRP CH2 HH2 sing N N 217 TRP OXT HXT sing N N 218 VAL N CA sing N N 219 VAL N H sing N N 220 VAL N H2 sing N N 221 VAL CA C sing N N 222 VAL CA CB sing N N 223 VAL CA HA sing N N 224 VAL C O doub N N 225 VAL C OXT sing N N 226 VAL CB CG1 sing N N 227 VAL CB CG2 sing N N 228 VAL CB HB sing N N 229 VAL CG1 HG11 sing N N 230 VAL CG1 HG12 sing N N 231 VAL CG1 HG13 sing N N 232 VAL CG2 HG21 sing N N 233 VAL CG2 HG22 sing N N 234 VAL CG2 HG23 sing N N 235 VAL OXT HXT sing N N 236 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute on Drug Abuse (NIH/NIDA)' 'United States' ag054022 1 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '7-hydroxy-8-[(E)-phenyldiazenyl]naphthalene-1,3-disulfonic acid' ORA 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5DLI _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #