HEADER CELL INVASION 04-OCT-17 6B7O TITLE CRYSTAL STRUCTURE OF LEGIONELLA EFFECTOR SDED (LPG2509) H67A IN TITLE 2 COMPLEX WITH ADP-RIBOSYLATED UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SDED (LPG2509) H67A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: POLYUBIQUITIN-C; COMPND 8 CHAIN: B, C; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 GENE: LPG2509; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: UBC; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS LEGIONELLA, UBIQUITIN, SDED, ADPR-UB, PR-UB, PHOSPHODIESTERASE, CELL KEYWDS 2 INVASION EXPDTA X-RAY DIFFRACTION AUTHOR Y.MAO,A.AKTURK,J.WASILKO REVDAT 5 01-JAN-20 6B7O 1 HETSYN REVDAT 4 20-FEB-19 6B7O 1 REMARK REVDAT 3 13-JUN-18 6B7O 1 JRNL REVDAT 2 06-JUN-18 6B7O 1 JRNL REVDAT 1 18-APR-18 6B7O 0 JRNL AUTH A.AKTURK,D.J.WASILKO,X.WU,Y.LIU,Y.ZHANG,J.QIU,Z.Q.LUO, JRNL AUTH 2 K.H.REITER,P.S.BRZOVIC,R.E.KLEVIT,Y.MAO JRNL TITL MECHANISM OF PHOSPHORIBOSYL-UBIQUITINATION MEDIATED BY A JRNL TITL 2 SINGLE LEGIONELLA EFFECTOR. JRNL REF NATURE V. 557 729 2018 JRNL REFN ESSN 1476-4687 JRNL PMID 29795346 JRNL DOI 10.1038/S41586-018-0147-6 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 41718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2208 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2996 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3685 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.220 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3853 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3668 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5225 ; 1.965 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8481 ; 0.928 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 478 ; 5.998 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;34.829 ;24.157 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 688 ;14.353 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;22.622 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 579 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4317 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 866 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1873 ; 1.582 ; 1.757 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1872 ; 1.581 ; 1.757 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2340 ; 2.266 ; 2.622 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2341 ; 2.266 ; 2.622 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1980 ; 2.569 ; 2.068 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1980 ; 2.568 ; 2.068 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2877 ; 3.934 ; 2.979 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4345 ; 6.065 ;14.714 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4262 ; 6.017 ;14.367 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 312 REMARK 3 ORIGIN FOR THE GROUP (A): 69.4650 67.5667 17.3440 REMARK 3 T TENSOR REMARK 3 T11: 0.0909 T22: 0.0688 REMARK 3 T33: 0.0434 T12: 0.0236 REMARK 3 T13: -0.0397 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 0.5908 L22: 1.0109 REMARK 3 L33: 1.6315 L12: 0.1702 REMARK 3 L13: -0.1612 L23: -0.3114 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: -0.0243 S13: 0.0123 REMARK 3 S21: -0.1695 S22: -0.0803 S23: 0.0094 REMARK 3 S31: 0.1144 S32: -0.1609 S33: 0.1076 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 401 REMARK 3 ORIGIN FOR THE GROUP (A): 59.0937 62.0443 39.0468 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.2733 REMARK 3 T33: 0.0941 T12: -0.0667 REMARK 3 T13: -0.0188 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 1.2319 L22: 1.5925 REMARK 3 L33: 0.6514 L12: 0.1256 REMARK 3 L13: -0.3434 L23: -0.2580 REMARK 3 S TENSOR REMARK 3 S11: 0.0945 S12: -0.2269 S13: -0.1071 REMARK 3 S21: 0.1422 S22: -0.1333 S23: 0.1109 REMARK 3 S31: 0.0329 S32: -0.2426 S33: 0.0388 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 76 REMARK 3 ORIGIN FOR THE GROUP (A): 85.8929 95.9334 11.1161 REMARK 3 T TENSOR REMARK 3 T11: 0.1442 T22: 0.0255 REMARK 3 T33: 0.1052 T12: 0.0421 REMARK 3 T13: -0.0126 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 2.8301 L22: 2.9735 REMARK 3 L33: 1.8924 L12: 1.8024 REMARK 3 L13: -0.8527 L23: -1.2634 REMARK 3 S TENSOR REMARK 3 S11: 0.0527 S12: -0.0689 S13: 0.4512 REMARK 3 S21: -0.2434 S22: -0.0573 S23: 0.2069 REMARK 3 S31: -0.0097 S32: 0.0699 S33: 0.0045 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6B7O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230413. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43941 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 68.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.413 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NA CACODYLATE PH 7.0, 21% PEG REMARK 280 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.38400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 313 REMARK 465 ILE A 314 REMARK 465 ASP A 315 REMARK 465 ASP A 316 REMARK 465 GLU A 317 REMARK 465 LYS A 318 REMARK 465 ILE A 319 REMARK 465 ASP A 320 REMARK 465 VAL A 321 REMARK 465 LYS A 322 REMARK 465 GLU A 323 REMARK 465 VAL A 324 REMARK 465 ASP A 325 REMARK 465 ASP A 326 REMARK 465 ARG A 327 REMARK 465 GLU A 328 REMARK 465 ILE A 329 REMARK 465 GLU A 330 REMARK 465 LYS A 331 REMARK 465 GLU A 332 REMARK 465 HIS A 333 REMARK 465 GLU A 334 REMARK 465 ILE A 335 REMARK 465 VAL A 336 REMARK 465 VAL A 337 REMARK 465 PRO A 338 REMARK 465 SER A 339 REMARK 465 GLN A 340 REMARK 465 ALA A 341 REMARK 465 THR A 342 REMARK 465 THR A 343 REMARK 465 PRO A 344 REMARK 465 LEU A 345 REMARK 465 SER A 346 REMARK 465 THR A 347 REMARK 465 VAL A 348 REMARK 465 LYS A 349 REMARK 465 THR A 350 REMARK 465 ASP A 351 REMARK 465 SER A 352 REMARK 465 PHE A 353 REMARK 465 VAL A 354 REMARK 465 GLU A 355 REMARK 465 LYS A 356 REMARK 465 LEU A 357 REMARK 465 LEU A 358 REMARK 465 LYS A 359 REMARK 465 PRO A 360 REMARK 465 PHE A 361 REMARK 465 MET A 362 REMARK 465 ILE A 363 REMARK 465 TRP A 364 REMARK 465 LYS A 365 REMARK 465 LYS A 366 REMARK 465 PRO A 367 REMARK 465 GLU A 368 REMARK 465 VAL A 369 REMARK 465 GLN A 370 REMARK 465 THR A 371 REMARK 465 THR A 372 REMARK 465 GLN A 373 REMARK 465 PRO A 374 REMARK 465 THR A 375 REMARK 465 THR A 376 REMARK 465 GLU A 377 REMARK 465 LYS A 378 REMARK 465 THR A 379 REMARK 465 ASN A 380 REMARK 465 LYS A 381 REMARK 465 PRO A 382 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 20 -58.80 -129.90 REMARK 500 SER A 125 -178.58 -173.29 REMARK 500 CYS A 196 18.14 -143.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AR6 B 401 DBREF 6B7O A 2 382 UNP Q5ZSK8 Q5ZSK8_LEGPH 17 397 DBREF 6B7O B 1 76 UNP P0CG48 UBC_HUMAN 1 76 DBREF 6B7O C 1 76 UNP P0CG48 UBC_HUMAN 1 76 SEQADV 6B7O SER A 0 UNP Q5ZSK8 EXPRESSION TAG SEQADV 6B7O MET A 1 UNP Q5ZSK8 EXPRESSION TAG SEQADV 6B7O ALA A 67 UNP Q5ZSK8 HIS 82 ENGINEERED MUTATION SEQRES 1 A 383 SER MET PRO ILE ILE LEU ASP SER ASP VAL LEU GLU VAL SEQRES 2 A 383 ALA GLU TYR VAL TYR LYS THR ARG LEU SER GLN PRO TYR SEQRES 3 A 383 THR GLU VAL GLY SER GLU TRP GLU TYR ASN TYR LYS ASN SEQRES 4 A 383 PRO THR ALA THR PHE ALA LYS GLY ASP GLY HIS ASN LEU SEQRES 5 A 383 GLN ARG TYR ILE THR ILE ASP GLY LYS GLN LEU HIS ARG SEQRES 6 A 383 PRO ILE ALA GLY LEU ALA HIS THR MET ARG THR LEU MET SEQRES 7 A 383 TYR SER GLN LEU MET TYR CYS SER SER LYS LYS GLN PRO SEQRES 8 A 383 SER PRO HIS VAL CYS GLN ASP GLY ARG THR ILE ALA ASP SEQRES 9 A 383 LEU SER GLU LEU ASP LEU LYS LYS ILE ASN ILE ALA GLN SEQRES 10 A 383 LEU PHE PHE VAL ALA GLY ARG GLU SER GLU ALA SER TYR SEQRES 11 A 383 GLY ASP ALA TYR HIS ARG TYR HIS LEU TYR GLY ALA LYS SEQRES 12 A 383 GLN PHE GLU GLU TYR ALA ARG LYS HIS LEU THR HIS LEU SEQRES 13 A 383 PHE SER GLU GLU GLU ILE ARG LEU TYR SER ARG CYS ILE SEQRES 14 A 383 GLU ASP ARG VAL GLY ASP SER PHE ASP GLY THR PRO GLU SEQRES 15 A 383 GLY TYR ILE ILE HIS LEU SER HIS MET ILE ASP LEU MET SEQRES 16 A 383 ARG CYS LYS SER PRO VAL GLU VAL PHE LEU GLY HIS SER SEQRES 17 A 383 LYS GLY VAL SER GLY ILE VAL PRO THR LEU ILE HIS LEU SEQRES 18 A 383 PHE GLY LYS GLN ASP GLY LEU ASP ILE MET HIS TYR ALA SEQRES 19 A 383 ARG GLY LEU PHE ALA ALA THR GLY GLU ALA VAL PRO TYR SEQRES 20 A 383 ILE ASP SER SER GLU TRP PRO HIS LEU GLY VAL ASP LEU SEQRES 21 A 383 SER ARG VAL GLN ARG ALA LEU SER ILE VAL GLY ASP ILE SEQRES 22 A 383 ASN VAL PRO GLY GLN GLU ALA ASP SER LYS LYS THR ALA SEQRES 23 A 383 GLN ALA GLY PHE SER VAL ASP GLY CYS TYR SER ALA LEU SEQRES 24 A 383 THR SER VAL PRO THR PRO SER TRP TYR GLU LYS GLU LEU SEQRES 25 A 383 LYS GLU ILE ASP ASP GLU LYS ILE ASP VAL LYS GLU VAL SEQRES 26 A 383 ASP ASP ARG GLU ILE GLU LYS GLU HIS GLU ILE VAL VAL SEQRES 27 A 383 PRO SER GLN ALA THR THR PRO LEU SER THR VAL LYS THR SEQRES 28 A 383 ASP SER PHE VAL GLU LYS LEU LEU LYS PRO PHE MET ILE SEQRES 29 A 383 TRP LYS LYS PRO GLU VAL GLN THR THR GLN PRO THR THR SEQRES 30 A 383 GLU LYS THR ASN LYS PRO SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 C 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 C 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 C 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 C 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 C 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 C 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET AR6 B 401 35 HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 4 AR6 C15 H23 N5 O14 P2 FORMUL 5 HOH *211(H2 O) HELIX 1 AA1 ASP A 6 ARG A 20 1 15 HELIX 2 AA2 GLY A 29 GLU A 33 5 5 HELIX 3 AA3 PRO A 65 ALA A 67 5 3 HELIX 4 AA4 GLY A 68 GLN A 89 1 22 HELIX 5 AA5 THR A 100 LEU A 104 5 5 HELIX 6 AA6 SER A 105 PHE A 118 1 14 HELIX 7 AA7 TYR A 129 LEU A 152 1 24 HELIX 8 AA8 SER A 157 ASP A 170 1 14 HELIX 9 AA9 THR A 179 LEU A 193 1 15 HELIX 10 AB1 MET A 194 CYS A 196 5 3 HELIX 11 AB2 SER A 198 LEU A 204 1 7 HELIX 12 AB3 GLY A 212 THR A 240 1 29 HELIX 13 AB4 SER A 250 LEU A 255 5 6 HELIX 14 AB5 ASP A 258 GLY A 270 1 13 HELIX 15 AB6 ASP A 280 SER A 290 1 11 HELIX 16 AB7 SER A 290 THR A 299 1 10 HELIX 17 AB8 THR B 22 GLY B 35 1 14 HELIX 18 AB9 PRO B 37 GLN B 41 5 5 HELIX 19 AC1 LEU B 56 ASN B 60 5 5 HELIX 20 AC2 THR C 22 GLY C 35 1 14 HELIX 21 AC3 PRO C 37 ASP C 39 5 3 HELIX 22 AC4 LEU C 56 ASN C 60 5 5 SHEET 1 AA1 2 TYR A 54 ILE A 57 0 SHEET 2 AA1 2 LYS A 60 HIS A 63 -1 O LEU A 62 N ILE A 55 SHEET 1 AA2 2 ILE A 247 ASP A 248 0 SHEET 2 AA2 2 ASN A 273 VAL A 274 -1 O VAL A 274 N ILE A 247 SHEET 1 AA3 5 THR B 12 GLU B 16 0 SHEET 2 AA3 5 GLN B 2 THR B 7 -1 N VAL B 5 O ILE B 13 SHEET 3 AA3 5 THR B 66 VAL B 70 1 O LEU B 67 N PHE B 4 SHEET 4 AA3 5 ARG B 42 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA3 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 AA4 5 THR C 12 GLU C 16 0 SHEET 2 AA4 5 GLN C 2 LYS C 6 -1 N VAL C 5 O ILE C 13 SHEET 3 AA4 5 THR C 66 LEU C 71 1 O LEU C 67 N PHE C 4 SHEET 4 AA4 5 GLN C 41 PHE C 45 -1 N ARG C 42 O VAL C 70 SHEET 5 AA4 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 LINK NH1 ARG B 42 C1D AR6 B 401 1555 1555 1.52 SITE 1 AC1 23 VAL A 120 ARG A 123 GLU A 126 SER A 128 SITE 2 AC1 23 TYR A 133 PHE A 176 HIS A 186 HIS A 189 SITE 3 AC1 23 MET A 190 LEU A 193 ARG A 195 CYS A 196 SITE 4 AC1 23 LYS A 197 HOH A 443 HOH A 445 HOH A 453 SITE 5 AC1 23 ARG B 42 GLN B 49 HOH B 502 HOH B 506 SITE 6 AC1 23 HOH B 511 HOH B 514 HOH B 531 CRYST1 64.677 58.768 75.111 90.00 114.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015461 0.000000 0.007021 0.00000 SCALE2 0.000000 0.017016 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014622 0.00000