HEADER TOXIN 05-OCT-17 6B80 TITLE CRYSTAL STRUCTURE OF MYOTOXIN II FROM BOTHROPS MOOJENI COMPLEXED TO TITLE 2 MYRISTIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: BASIC PHOSPHOLIPASE A2 HOMOLOG 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SVPLA2 HOMOLOG,M-VI,MJTX-II,MYOTOXIN II SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOTHROPS MOOJENI; SOURCE 3 ORGANISM_COMMON: LANCE-HEADED VIPER; SOURCE 4 ORGANISM_TAXID: 98334; SOURCE 5 ORGAN: VENOM GLAND KEYWDS MYOTOXIN II, PHOSPHOLIPASE A2-LIKE, BOTHROPS MOOJENI, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR G.H.M.SALVADOR,J.I.DOS SANTOS,M.R.M.FONTES REVDAT 5 23-OCT-24 6B80 1 REMARK REVDAT 4 04-OCT-23 6B80 1 REMARK REVDAT 3 01-JAN-20 6B80 1 REMARK REVDAT 2 17-APR-19 6B80 1 REMARK REVDAT 1 03-OCT-18 6B80 0 JRNL AUTH G.H.M.SALVADOR,J.I.DOS SANTOS,R.J.BORGES,M.R.M.FONTES JRNL TITL STRUCTURAL EVIDENCE FOR A FATTY ACID-INDEPENDENT MYOTOXIC JRNL TITL 2 MECHANISM FOR A PHOSPHOLIPASE A2-LIKE TOXIN. JRNL REF BIOCHIM BIOPHYS ACTA V.1866 473 2018 JRNL REF 2 PROTEINS PROTEOM JRNL REFN ISSN 1570-9639 JRNL PMID 29287778 JRNL DOI 10.1016/J.BBAPAP.2017.12.008 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 20097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8670 - 4.6938 1.00 1454 159 0.1727 0.1915 REMARK 3 2 4.6938 - 3.7269 1.00 1367 151 0.1326 0.1444 REMARK 3 3 3.7269 - 3.2561 0.99 1345 150 0.1571 0.1725 REMARK 3 4 3.2561 - 2.9586 0.99 1319 146 0.1578 0.2222 REMARK 3 5 2.9586 - 2.7466 0.99 1340 147 0.1765 0.2167 REMARK 3 6 2.7466 - 2.5847 0.98 1293 143 0.1742 0.1900 REMARK 3 7 2.5847 - 2.4553 0.97 1294 143 0.1801 0.2002 REMARK 3 8 2.4553 - 2.3484 0.96 1265 140 0.1784 0.2055 REMARK 3 9 2.3484 - 2.2580 0.95 1267 140 0.1831 0.2547 REMARK 3 10 2.2580 - 2.1801 0.94 1217 134 0.1773 0.2141 REMARK 3 11 2.1801 - 2.1120 0.94 1246 139 0.1804 0.2158 REMARK 3 12 2.1120 - 2.0516 0.94 1248 137 0.1912 0.2190 REMARK 3 13 2.0516 - 1.9976 0.94 1248 137 0.2199 0.2690 REMARK 3 14 1.9976 - 1.9489 0.92 1195 133 0.2697 0.2814 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2029 REMARK 3 ANGLE : 1.376 2691 REMARK 3 CHIRALITY : 0.083 268 REMARK 3 PLANARITY : 0.006 337 REMARK 3 DIHEDRAL : 15.977 786 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9331 67.9633 98.0394 REMARK 3 T TENSOR REMARK 3 T11: 0.1295 T22: 0.1396 REMARK 3 T33: 0.1257 T12: -0.0022 REMARK 3 T13: 0.0156 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.9834 L22: 1.5489 REMARK 3 L33: 1.2769 L12: -0.7312 REMARK 3 L13: 0.6363 L23: 0.4486 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: -0.0394 S13: -0.0890 REMARK 3 S21: 0.0112 S22: 0.0510 S23: -0.0301 REMARK 3 S31: 0.1437 S32: -0.0572 S33: -0.0259 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0181 64.1372 89.2182 REMARK 3 T TENSOR REMARK 3 T11: 0.1780 T22: 0.1560 REMARK 3 T33: 0.1714 T12: 0.0193 REMARK 3 T13: -0.0173 T23: -0.0273 REMARK 3 L TENSOR REMARK 3 L11: 4.1624 L22: 4.1770 REMARK 3 L33: 6.2759 L12: 1.1140 REMARK 3 L13: -2.4985 L23: -1.4544 REMARK 3 S TENSOR REMARK 3 S11: 0.0799 S12: 0.1303 S13: 0.0339 REMARK 3 S21: -0.3247 S22: 0.0141 S23: 0.0570 REMARK 3 S31: 0.3934 S32: -0.0850 S33: -0.0947 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3870 75.2522 87.2243 REMARK 3 T TENSOR REMARK 3 T11: 0.1252 T22: 0.2259 REMARK 3 T33: 0.1981 T12: 0.0008 REMARK 3 T13: 0.0231 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.6553 L22: 1.3389 REMARK 3 L33: 1.2621 L12: -0.7999 REMARK 3 L13: 0.7914 L23: -1.2792 REMARK 3 S TENSOR REMARK 3 S11: -0.1138 S12: 0.0764 S13: -0.0106 REMARK 3 S21: -0.0270 S22: 0.0907 S23: -0.1014 REMARK 3 S31: 0.2193 S32: 0.4139 S33: 0.0494 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9579 84.5791 90.6666 REMARK 3 T TENSOR REMARK 3 T11: 0.1484 T22: 0.1677 REMARK 3 T33: 0.1684 T12: 0.0116 REMARK 3 T13: -0.0084 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 5.1779 L22: 1.5629 REMARK 3 L33: 3.9678 L12: -0.4009 REMARK 3 L13: -2.9945 L23: 0.4984 REMARK 3 S TENSOR REMARK 3 S11: 0.1476 S12: 0.3067 S13: 0.2153 REMARK 3 S21: -0.1912 S22: -0.0518 S23: -0.0288 REMARK 3 S31: -0.2154 S32: -0.0980 S33: -0.0525 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0912 72.9947 90.3760 REMARK 3 T TENSOR REMARK 3 T11: 0.1004 T22: 0.1296 REMARK 3 T33: 0.1457 T12: 0.0141 REMARK 3 T13: -0.0202 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 3.2038 L22: 2.6122 REMARK 3 L33: 2.0872 L12: 1.6872 REMARK 3 L13: -1.1785 L23: -1.2730 REMARK 3 S TENSOR REMARK 3 S11: -0.1120 S12: 0.2943 S13: -0.1384 REMARK 3 S21: -0.2014 S22: 0.0718 S23: 0.1271 REMARK 3 S31: 0.1676 S32: -0.1913 S33: 0.0045 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2536 59.2368 104.1604 REMARK 3 T TENSOR REMARK 3 T11: 0.1932 T22: 0.2204 REMARK 3 T33: 0.3222 T12: -0.0289 REMARK 3 T13: 0.0200 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 2.0323 L22: 6.3149 REMARK 3 L33: 8.9743 L12: 0.6697 REMARK 3 L13: 2.6068 L23: -2.3466 REMARK 3 S TENSOR REMARK 3 S11: 0.3076 S12: -0.0178 S13: -0.7574 REMARK 3 S21: 0.3352 S22: -0.0455 S23: 0.2402 REMARK 3 S31: 0.3516 S32: -0.2800 S33: -0.0769 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7745 55.2504 96.0587 REMARK 3 T TENSOR REMARK 3 T11: 0.2032 T22: 0.1648 REMARK 3 T33: 0.2401 T12: 0.0107 REMARK 3 T13: -0.0060 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.2583 L22: 4.3736 REMARK 3 L33: 4.8279 L12: 0.1850 REMARK 3 L13: 0.1792 L23: 0.9740 REMARK 3 S TENSOR REMARK 3 S11: 0.0509 S12: 0.0301 S13: -0.1539 REMARK 3 S21: 0.0506 S22: 0.1576 S23: 0.0444 REMARK 3 S31: 0.5966 S32: 0.1635 S33: -0.1123 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.4056 64.5460 108.2284 REMARK 3 T TENSOR REMARK 3 T11: 0.1405 T22: 0.1740 REMARK 3 T33: 0.1260 T12: 0.0013 REMARK 3 T13: -0.0092 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 1.5009 L22: 2.4733 REMARK 3 L33: 0.4268 L12: 0.1186 REMARK 3 L13: -0.1897 L23: -0.3557 REMARK 3 S TENSOR REMARK 3 S11: -0.0705 S12: -0.0009 S13: -0.0385 REMARK 3 S21: 0.0314 S22: 0.0774 S23: 0.0693 REMARK 3 S31: -0.0260 S32: -0.0132 S33: -0.0122 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.7375 67.6550 106.0041 REMARK 3 T TENSOR REMARK 3 T11: 0.1453 T22: 0.1382 REMARK 3 T33: 0.1585 T12: -0.0241 REMARK 3 T13: 0.0209 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 4.3429 L22: 3.8679 REMARK 3 L33: 3.5525 L12: 0.0733 REMARK 3 L13: -1.6788 L23: -0.7699 REMARK 3 S TENSOR REMARK 3 S11: -0.1746 S12: 0.0075 S13: -0.0021 REMARK 3 S21: -0.0883 S22: -0.0579 S23: -0.2864 REMARK 3 S31: -0.0392 S32: 0.1122 S33: -0.0241 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9730 51.1829 103.2288 REMARK 3 T TENSOR REMARK 3 T11: 0.2755 T22: 0.1682 REMARK 3 T33: 0.1516 T12: -0.0072 REMARK 3 T13: 0.0189 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 1.2361 L22: 2.6373 REMARK 3 L33: 6.6543 L12: 0.6156 REMARK 3 L13: -0.8186 L23: -2.6261 REMARK 3 S TENSOR REMARK 3 S11: -0.0854 S12: 0.1818 S13: 0.0651 REMARK 3 S21: -0.6802 S22: 0.0111 S23: -0.0662 REMARK 3 S31: 0.4199 S32: 0.3474 S33: 0.2460 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 89 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.0320 57.6102 107.2183 REMARK 3 T TENSOR REMARK 3 T11: 0.1653 T22: 0.1332 REMARK 3 T33: 0.2285 T12: -0.0200 REMARK 3 T13: -0.0074 T23: 0.0370 REMARK 3 L TENSOR REMARK 3 L11: 2.3573 L22: 2.6303 REMARK 3 L33: 4.7749 L12: -0.5893 REMARK 3 L13: -0.8376 L23: 1.5014 REMARK 3 S TENSOR REMARK 3 S11: -0.0041 S12: 0.1174 S13: 0.0767 REMARK 3 S21: -0.1737 S22: 0.1982 S23: -0.4038 REMARK 3 S31: 0.0179 S32: 0.2618 S33: -0.0534 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5780 74.6591 109.8338 REMARK 3 T TENSOR REMARK 3 T11: 0.1654 T22: 0.1200 REMARK 3 T33: 0.2211 T12: 0.0213 REMARK 3 T13: -0.0132 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 2.4357 L22: 1.2352 REMARK 3 L33: 1.0429 L12: 0.3563 REMARK 3 L13: 0.4243 L23: -0.5056 REMARK 3 S TENSOR REMARK 3 S11: -0.1480 S12: 0.0533 S13: 0.4215 REMARK 3 S21: 0.1186 S22: 0.1316 S23: -0.0762 REMARK 3 S31: -0.1613 S32: -0.1476 S33: -0.0087 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B80 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230425. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.425 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20141 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.949 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.17200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.67800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KF3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000, 0.1 M TRIS HCL, 0.25 M REMARK 280 LITHIUM SULFATE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.27250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.42400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.39750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.42400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.27250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.39750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 LYS B 128 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 415 O HOH B 418 1.83 REMARK 500 O HOH B 328 O HOH B 423 1.97 REMARK 500 NZ LYS A 115 O2 SO4 A 204 2.10 REMARK 500 O HOH A 412 O HOH B 437 2.13 REMARK 500 NZ LYS A 69 O HOH A 301 2.15 REMARK 500 O HOH A 355 O HOH A 412 2.17 REMARK 500 O2 SO4 A 203 O HOH A 302 2.18 REMARK 500 O HOH B 395 O HOH B 409 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 -168.00 -166.56 REMARK 500 ASN A 87 -125.16 43.98 REMARK 500 GLU B 86 92.60 -14.97 REMARK 500 ASN B 87 -130.12 -132.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 85 GLU B 86 137.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 460 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 461 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH B 451 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH B 452 DISTANCE = 7.05 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYR A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYR B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KF3 RELATED DB: PDB REMARK 900 SAME STRUCTURE COMPLEXED TO PEG4000 REMARK 900 RELATED ID: 4YV5 RELATED DB: PDB REMARK 900 SAME STRUCTURE COMPLEXED TO SURAMIN INHIBITOR DBREF 6B80 A 1 133 UNP Q9I834 PA2H2_BOTMO 1 122 DBREF 6B80 B 1 133 UNP Q9I834 PA2H2_BOTMO 1 122 SEQRES 1 A 122 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 A 122 GLY LYS ASN PRO ALA LYS SER TYR GLY VAL TYR GLY CYS SEQRES 3 A 122 ASN CYS GLY VAL GLY GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 A 122 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 A 122 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 A 122 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 A 122 ASN SER CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 A 122 VAL ALA ILE CYS LEU ARG GLU ASN LEU ASP THR TYR ASN SEQRES 9 A 122 LYS LYS TYR ARG TYR ASN TYR LEU LYS PRO PHE CYS LYS SEQRES 10 A 122 LYS ALA ASP PRO CYS SEQRES 1 B 122 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 B 122 GLY LYS ASN PRO ALA LYS SER TYR GLY VAL TYR GLY CYS SEQRES 3 B 122 ASN CYS GLY VAL GLY GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 B 122 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 B 122 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 B 122 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 B 122 ASN SER CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 B 122 VAL ALA ILE CYS LEU ARG GLU ASN LEU ASP THR TYR ASN SEQRES 9 B 122 LYS LYS TYR ARG TYR ASN TYR LEU LYS PRO PHE CYS LYS SEQRES 10 B 122 LYS ALA ASP PRO CYS HET MYR A 201 16 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET MYR B 201 16 HET PE4 B 202 24 HET SO4 B 203 5 HET SO4 B 204 5 HET SO4 B 205 5 HETNAM MYR MYRISTIC ACID HETNAM SO4 SULFATE ION HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 FORMUL 3 MYR 2(C14 H28 O2) FORMUL 4 SO4 6(O4 S 2-) FORMUL 8 PE4 C16 H34 O8 FORMUL 12 HOH *313(H2 O) HELIX 1 AA1 SER A 1 GLY A 15 1 14 HELIX 2 AA2 ASN A 17 GLY A 23 1 7 HELIX 3 AA3 ASP A 39 LYS A 57 1 16 HELIX 4 AA4 ASN A 88 ASN A 109 1 21 HELIX 5 AA5 LEU A 110 TYR A 113 5 4 HELIX 6 AA6 ASN A 114 ARG A 118 5 5 HELIX 7 AA7 LEU A 122 CYS A 127 5 5 HELIX 8 AA8 LEU B 2 GLY B 15 1 13 HELIX 9 AA9 ASN B 17 GLY B 23 1 7 HELIX 10 AB1 ASP B 39 LYS B 57 1 16 HELIX 11 AB2 ASN B 88 ASN B 109 1 21 HELIX 12 AB3 LEU B 110 TYR B 113 5 4 HELIX 13 AB4 ASN B 114 ARG B 118 5 5 HELIX 14 AB5 LEU B 122 CYS B 127 5 5 SHEET 1 AA1 2 TYR A 75 LYS A 78 0 SHEET 2 AA1 2 THR A 81 CYS A 84 -1 O THR A 81 N LYS A 78 SHEET 1 AA2 2 TYR B 75 LYS B 78 0 SHEET 2 AA2 2 THR B 81 CYS B 84 -1 O VAL B 83 N SER B 76 SSBOND 1 CYS A 27 CYS A 127 1555 1555 2.05 SSBOND 2 CYS A 29 CYS A 45 1555 1555 2.05 SSBOND 3 CYS A 44 CYS A 105 1555 1555 2.04 SSBOND 4 CYS A 50 CYS A 133 1555 1555 2.05 SSBOND 5 CYS A 51 CYS A 98 1555 1555 2.04 SSBOND 6 CYS A 61 CYS A 90 1555 1555 2.04 SSBOND 7 CYS A 84 CYS A 96 1555 1555 2.04 SSBOND 8 CYS B 27 CYS B 127 1555 1555 2.05 SSBOND 9 CYS B 29 CYS B 45 1555 1555 2.05 SSBOND 10 CYS B 44 CYS B 105 1555 1555 2.05 SSBOND 11 CYS B 50 CYS B 133 1555 1555 2.04 SSBOND 12 CYS B 51 CYS B 98 1555 1555 2.05 SSBOND 13 CYS B 61 CYS B 90 1555 1555 2.04 SSBOND 14 CYS B 84 CYS B 96 1555 1555 2.03 SITE 1 AC1 9 LEU A 2 PHE A 3 TYR A 22 ASN A 28 SITE 2 AC1 9 CYS A 29 GLY A 30 HIS A 48 LYS A 49 SITE 3 AC1 9 TYR B 121 SITE 1 AC2 6 LYS A 16 ASN A 17 LYS A 20 HOH A 305 SITE 2 AC2 6 HOH A 312 HOH A 340 SITE 1 AC3 6 GLY A 33 ARG A 34 LYS A 53 HOH A 302 SITE 2 AC3 6 HOH A 366 HOH A 377 SITE 1 AC4 4 LYS A 16 LYS A 20 LYS A 115 ARG A 118 SITE 1 AC5 9 TYR A 121 LYS A 123 ILE B 9 ASN B 28 SITE 2 AC5 9 CYS B 29 GLY B 30 CYS B 45 HIS B 48 SITE 3 AC5 9 LYS B 49 SITE 1 AC6 13 LYS A 7 LEU A 10 GLN A 11 GLY A 15 SITE 2 AC6 13 TYR A 75 TRP A 77 LYS B 7 LEU B 10 SITE 3 AC6 13 GLN B 11 GLY B 15 TYR B 75 TRP B 77 SITE 4 AC6 13 HOH B 313 SITE 1 AC7 6 LYS B 16 ASN B 17 LYS B 20 HOH B 314 SITE 2 AC7 6 HOH B 332 HOH B 345 SITE 1 AC8 6 ARG B 34 LYS B 53 HOH B 301 HOH B 307 SITE 2 AC8 6 HOH B 333 HOH B 377 SITE 1 AC9 5 LYS B 16 LYS B 20 LYS B 115 ARG B 118 SITE 2 AC9 5 HOH B 379 CRYST1 50.545 62.795 86.848 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019784 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015925 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011514 0.00000