HEADER TOXIN 05-OCT-17 6B83 TITLE CRYSTAL STRUCTURE OF MYOTOXIN II FROM BOTHROPS MOOJENI COMPLEXED TO TITLE 2 CAPROIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: BASIC PHOSPHOLIPASE A2 HOMOLOG 2; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: SVPLA2 HOMOLOG,M-VI,MJTX-II,MYOTOXIN II SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOTHROPS MOOJENI; SOURCE 3 ORGANISM_COMMON: LANCE-HEADED VIPER; SOURCE 4 ORGANISM_TAXID: 98334 KEYWDS MYOTOXIN II, BOTHROPS MOOJENI, PHOSPHOLIPASE A2-LIKE, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR G.H.M.SALVADOR,J.I.DOS SANTOS,M.R.M.FONTES REVDAT 4 04-OCT-23 6B83 1 REMARK REVDAT 3 01-JAN-20 6B83 1 REMARK REVDAT 2 17-APR-19 6B83 1 REMARK REVDAT 1 03-OCT-18 6B83 0 JRNL AUTH G.H.M.SALVADOR,J.I.DOS SANTOS,R.J.BORGES,M.R.M.FONTES JRNL TITL STRUCTURAL EVIDENCE FOR A FATTY ACID-INDEPENDENT MYOTOXIC JRNL TITL 2 MECHANISM FOR A PHOSPHOLIPASE A2-LIKE TOXIN. JRNL REF BIOCHIM BIOPHYS ACTA V.1866 473 2018 JRNL REF 2 PROTEINS PROTEOM JRNL REFN ISSN 1570-9639 JRNL PMID 29287778 JRNL DOI 10.1016/J.BBAPAP.2017.12.008 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 31342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.8350 - 3.7761 0.90 2646 140 0.1755 0.1670 REMARK 3 2 3.7761 - 2.9985 0.96 2686 142 0.1768 0.1857 REMARK 3 3 2.9985 - 2.6198 0.98 2722 143 0.1968 0.2670 REMARK 3 4 2.6198 - 2.3804 0.99 2752 145 0.1910 0.2125 REMARK 3 5 2.3804 - 2.2099 0.99 2728 144 0.1877 0.2153 REMARK 3 6 2.2099 - 2.0797 1.00 2741 143 0.1972 0.1922 REMARK 3 7 2.0797 - 1.9755 1.00 2720 144 0.1967 0.2494 REMARK 3 8 1.9755 - 1.8896 0.99 2707 142 0.2063 0.2365 REMARK 3 9 1.8896 - 1.8168 0.99 2708 143 0.2025 0.2293 REMARK 3 10 1.8168 - 1.7542 0.99 2687 141 0.2281 0.2294 REMARK 3 11 1.7542 - 1.6993 0.98 2677 141 0.2658 0.2887 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1978 REMARK 3 ANGLE : 0.946 2640 REMARK 3 CHIRALITY : 0.036 268 REMARK 3 PLANARITY : 0.003 334 REMARK 3 DIHEDRAL : 12.417 743 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9176 7.8000 -23.0854 REMARK 3 T TENSOR REMARK 3 T11: 0.2412 T22: 0.3492 REMARK 3 T33: 0.2128 T12: -0.0778 REMARK 3 T13: 0.0380 T23: -0.0554 REMARK 3 L TENSOR REMARK 3 L11: 3.2045 L22: 3.2677 REMARK 3 L33: 4.1294 L12: 0.2673 REMARK 3 L13: 0.0379 L23: 0.9501 REMARK 3 S TENSOR REMARK 3 S11: -0.2101 S12: 0.1085 S13: 0.0409 REMARK 3 S21: -0.4732 S22: 0.5516 S23: -0.3130 REMARK 3 S31: -0.1953 S32: 0.7815 S33: -0.3083 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1644 -3.9822 -22.1326 REMARK 3 T TENSOR REMARK 3 T11: 0.1941 T22: 0.4393 REMARK 3 T33: 0.3531 T12: 0.0158 REMARK 3 T13: 0.0193 T23: -0.1519 REMARK 3 L TENSOR REMARK 3 L11: 2.6832 L22: 4.8328 REMARK 3 L33: 2.4644 L12: -0.8056 REMARK 3 L13: -2.2274 L23: 0.8880 REMARK 3 S TENSOR REMARK 3 S11: -0.2579 S12: 0.5268 S13: -0.3828 REMARK 3 S21: -0.2692 S22: 0.8903 S23: -0.8799 REMARK 3 S31: 0.0928 S32: 0.7735 S33: -0.5133 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2952 -7.2719 -23.9767 REMARK 3 T TENSOR REMARK 3 T11: 0.2347 T22: 0.2230 REMARK 3 T33: 0.2795 T12: -0.0365 REMARK 3 T13: -0.0525 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 2.8945 L22: 3.3040 REMARK 3 L33: 2.1857 L12: -0.4596 REMARK 3 L13: 0.1282 L23: 0.4215 REMARK 3 S TENSOR REMARK 3 S11: -0.2329 S12: 0.1834 S13: -0.1895 REMARK 3 S21: -0.3343 S22: 0.2887 S23: 0.4322 REMARK 3 S31: -0.0154 S32: 0.0606 S33: -0.1119 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4990 10.9490 -27.3814 REMARK 3 T TENSOR REMARK 3 T11: 0.5007 T22: 0.2572 REMARK 3 T33: 0.1757 T12: -0.0793 REMARK 3 T13: -0.0448 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 1.6911 L22: 2.2412 REMARK 3 L33: 3.8589 L12: 0.0300 REMARK 3 L13: 0.1533 L23: 1.3547 REMARK 3 S TENSOR REMARK 3 S11: -0.1532 S12: 0.3950 S13: 0.0038 REMARK 3 S21: -0.8524 S22: 0.3100 S23: 0.2061 REMARK 3 S31: -0.0732 S32: 0.1386 S33: -0.1794 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3950 14.6517 -27.3313 REMARK 3 T TENSOR REMARK 3 T11: 0.6820 T22: 0.3774 REMARK 3 T33: 0.3912 T12: -0.0067 REMARK 3 T13: -0.2341 T23: 0.0869 REMARK 3 L TENSOR REMARK 3 L11: 0.3506 L22: 0.0301 REMARK 3 L33: 4.5184 L12: -0.0945 REMARK 3 L13: 0.5125 L23: -0.2243 REMARK 3 S TENSOR REMARK 3 S11: -0.3875 S12: 0.3921 S13: 0.3694 REMARK 3 S21: -1.2900 S22: 0.1789 S23: 0.9542 REMARK 3 S31: -0.8787 S32: -1.0152 S33: -0.0875 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4815 5.3610 -23.3332 REMARK 3 T TENSOR REMARK 3 T11: 0.2499 T22: 0.1947 REMARK 3 T33: 0.2810 T12: -0.0400 REMARK 3 T13: -0.0571 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.4527 L22: 4.5684 REMARK 3 L33: 5.5986 L12: 0.0456 REMARK 3 L13: 0.5097 L23: -0.5680 REMARK 3 S TENSOR REMARK 3 S11: -0.1150 S12: 0.1845 S13: -0.0204 REMARK 3 S21: -0.5684 S22: 0.3877 S23: 0.6544 REMARK 3 S31: -0.2064 S32: -0.1516 S33: -0.3238 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9870 -7.7154 -12.8619 REMARK 3 T TENSOR REMARK 3 T11: 0.3025 T22: 0.3781 REMARK 3 T33: 0.3679 T12: 0.1813 REMARK 3 T13: -0.1611 T23: -0.1398 REMARK 3 L TENSOR REMARK 3 L11: 6.2356 L22: 7.6302 REMARK 3 L33: 4.0807 L12: -2.7328 REMARK 3 L13: 0.4932 L23: -3.2210 REMARK 3 S TENSOR REMARK 3 S11: 0.4153 S12: 0.0985 S13: -0.8632 REMARK 3 S21: 0.4740 S22: 0.0471 S23: -0.3106 REMARK 3 S31: 0.9486 S32: 1.1683 S33: -0.2149 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 108 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7971 -12.3436 -24.3967 REMARK 3 T TENSOR REMARK 3 T11: 0.4966 T22: 0.6593 REMARK 3 T33: 0.6807 T12: 0.0959 REMARK 3 T13: 0.1303 T23: -0.0548 REMARK 3 L TENSOR REMARK 3 L11: 4.5552 L22: 1.3964 REMARK 3 L33: 0.3698 L12: -2.5224 REMARK 3 L13: -0.6770 L23: 0.4518 REMARK 3 S TENSOR REMARK 3 S11: -0.2132 S12: -0.3723 S13: -0.4984 REMARK 3 S21: 0.0951 S22: 0.4470 S23: -0.3649 REMARK 3 S31: 0.4530 S32: 0.9067 S33: 0.0977 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5086 -15.2657 -27.7668 REMARK 3 T TENSOR REMARK 3 T11: 0.2823 T22: 0.2720 REMARK 3 T33: 0.4247 T12: -0.0209 REMARK 3 T13: 0.0030 T23: -0.0804 REMARK 3 L TENSOR REMARK 3 L11: 6.4272 L22: 2.7092 REMARK 3 L33: 1.0764 L12: -2.0008 REMARK 3 L13: 1.3069 L23: -0.6686 REMARK 3 S TENSOR REMARK 3 S11: -0.2429 S12: 0.5020 S13: -0.4337 REMARK 3 S21: -0.4190 S22: 0.3970 S23: -0.1611 REMARK 3 S31: -0.0055 S32: 0.2771 S33: -0.1416 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6215 -14.2308 -33.2870 REMARK 3 T TENSOR REMARK 3 T11: 0.1982 T22: 0.3465 REMARK 3 T33: 0.2017 T12: -0.0183 REMARK 3 T13: 0.0217 T23: -0.0591 REMARK 3 L TENSOR REMARK 3 L11: 4.6379 L22: 1.4794 REMARK 3 L33: 3.7235 L12: 0.2928 REMARK 3 L13: 1.5677 L23: 0.3374 REMARK 3 S TENSOR REMARK 3 S11: 0.1227 S12: -0.7122 S13: 0.1679 REMARK 3 S21: 0.1298 S22: -0.0781 S23: -0.0307 REMARK 3 S31: 0.3276 S32: -0.2686 S33: 0.0294 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7825 -7.2198 -26.3926 REMARK 3 T TENSOR REMARK 3 T11: 0.2248 T22: 0.5134 REMARK 3 T33: 0.3544 T12: 0.0058 REMARK 3 T13: 0.0385 T23: -0.1334 REMARK 3 L TENSOR REMARK 3 L11: 2.4853 L22: 3.5029 REMARK 3 L33: 1.2163 L12: -1.1001 REMARK 3 L13: -1.6781 L23: 0.6361 REMARK 3 S TENSOR REMARK 3 S11: 0.1059 S12: -1.0319 S13: 0.1074 REMARK 3 S21: 0.4049 S22: -0.0498 S23: 0.5280 REMARK 3 S31: -0.1825 S32: 0.1663 S33: -0.0006 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8993 3.6540 -35.2292 REMARK 3 T TENSOR REMARK 3 T11: 0.4391 T22: 0.2878 REMARK 3 T33: 0.4989 T12: 0.0286 REMARK 3 T13: 0.0319 T23: -0.1399 REMARK 3 L TENSOR REMARK 3 L11: 2.0531 L22: 2.0049 REMARK 3 L33: 2.6789 L12: -0.0052 REMARK 3 L13: 1.0674 L23: -0.3650 REMARK 3 S TENSOR REMARK 3 S11: 0.1425 S12: -0.1288 S13: 0.7135 REMARK 3 S21: -0.3999 S22: -0.0017 S23: 0.1949 REMARK 3 S31: -0.9740 S32: -0.0602 S33: -0.1352 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8749 -1.6520 -42.0779 REMARK 3 T TENSOR REMARK 3 T11: 0.3576 T22: 0.2127 REMARK 3 T33: 0.3472 T12: 0.0026 REMARK 3 T13: 0.0136 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 0.2544 L22: 1.2069 REMARK 3 L33: 3.9004 L12: 0.0943 REMARK 3 L13: -0.0551 L23: 0.8893 REMARK 3 S TENSOR REMARK 3 S11: -0.0909 S12: 0.2641 S13: 0.4079 REMARK 3 S21: -0.6493 S22: 0.1664 S23: -0.1389 REMARK 3 S31: -0.6561 S32: 0.3872 S33: -0.0656 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2357 -13.1369 -42.9578 REMARK 3 T TENSOR REMARK 3 T11: 0.2105 T22: 0.2699 REMARK 3 T33: 0.2041 T12: 0.0130 REMARK 3 T13: -0.0257 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 3.8649 L22: 2.3885 REMARK 3 L33: 3.8410 L12: -0.4174 REMARK 3 L13: -0.1871 L23: -0.0587 REMARK 3 S TENSOR REMARK 3 S11: -0.1266 S12: -0.2707 S13: -0.0561 REMARK 3 S21: 0.1083 S22: 0.0490 S23: 0.2549 REMARK 3 S31: -0.3626 S32: -0.5549 S33: 0.1454 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1874 -21.9115 -40.6594 REMARK 3 T TENSOR REMARK 3 T11: 0.2198 T22: 0.2144 REMARK 3 T33: 0.2358 T12: 0.0008 REMARK 3 T13: -0.0077 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 4.9466 L22: 1.5493 REMARK 3 L33: 3.8176 L12: -0.6684 REMARK 3 L13: 3.1045 L23: -0.2552 REMARK 3 S TENSOR REMARK 3 S11: 0.1820 S12: 0.1288 S13: -0.3657 REMARK 3 S21: -0.1963 S22: -0.0662 S23: 0.0467 REMARK 3 S31: 0.3652 S32: -0.0016 S33: -0.0376 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0863 -10.2791 -40.3415 REMARK 3 T TENSOR REMARK 3 T11: 0.1808 T22: 0.2356 REMARK 3 T33: 0.2375 T12: -0.0029 REMARK 3 T13: 0.0374 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 3.5278 L22: 2.5393 REMARK 3 L33: 2.7354 L12: 0.2734 REMARK 3 L13: 0.4050 L23: 1.4267 REMARK 3 S TENSOR REMARK 3 S11: 0.0502 S12: -0.1828 S13: 0.1599 REMARK 3 S21: -0.1831 S22: 0.0634 S23: -0.2833 REMARK 3 S31: -0.2595 S32: 0.2186 S33: -0.1472 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9123 3.4428 -26.3379 REMARK 3 T TENSOR REMARK 3 T11: 0.4185 T22: 0.5296 REMARK 3 T33: 0.4817 T12: -0.0763 REMARK 3 T13: -0.0216 T23: -0.2568 REMARK 3 L TENSOR REMARK 3 L11: 4.9831 L22: 2.7524 REMARK 3 L33: 2.8981 L12: -1.7610 REMARK 3 L13: -0.2291 L23: 1.3325 REMARK 3 S TENSOR REMARK 3 S11: -0.3571 S12: -1.3067 S13: 0.4748 REMARK 3 S21: 0.4490 S22: 0.3228 S23: -0.4404 REMARK 3 S31: -0.6790 S32: 0.5588 S33: -0.2352 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8596 6.3011 -27.4721 REMARK 3 T TENSOR REMARK 3 T11: 1.0373 T22: 0.9430 REMARK 3 T33: 0.8304 T12: -0.1530 REMARK 3 T13: 0.3376 T23: -0.1746 REMARK 3 L TENSOR REMARK 3 L11: 6.7206 L22: 6.1159 REMARK 3 L33: 8.0865 L12: -1.1929 REMARK 3 L13: 1.2179 L23: -3.6209 REMARK 3 S TENSOR REMARK 3 S11: 0.5385 S12: -1.0486 S13: 1.5231 REMARK 3 S21: -0.4657 S22: 0.7879 S23: 0.7823 REMARK 3 S31: -1.5521 S32: -0.8043 S33: 0.1278 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9155 8.8258 -44.3842 REMARK 3 T TENSOR REMARK 3 T11: 0.9010 T22: 0.2933 REMARK 3 T33: 0.8080 T12: -0.0090 REMARK 3 T13: 0.0784 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 2.7892 L22: 3.9281 REMARK 3 L33: 2.6410 L12: 0.7471 REMARK 3 L13: 2.6912 L23: 1.0012 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: -0.0304 S13: 1.1045 REMARK 3 S21: -0.8181 S22: 0.3846 S23: 0.4083 REMARK 3 S31: -0.3988 S32: 0.1609 S33: -0.6373 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B83 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230430. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.425 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31375 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.39600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KF3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG4000, 0.1 M TRIS HCL, 0.2 M REMARK 280 LITHIUM SULFATE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.61900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.05300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.49550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.05300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.61900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.49550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 53 CG CD CE NZ REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 LYS A 35 CD CE NZ REMARK 470 ASN A 110 CG OD1 ND2 REMARK 470 LYS A 117 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 84 O HOH A 301 1.96 REMARK 500 O HOH B 306 O HOH B 409 1.98 REMARK 500 O HOH A 378 O HOH A 394 2.00 REMARK 500 O HOH B 417 O HOH B 426 2.04 REMARK 500 O HOH A 399 O HOH A 413 2.04 REMARK 500 O HOH B 364 O HOH B 411 2.16 REMARK 500 O HOH B 367 O HOH B 384 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 409 O HOH B 419 3544 1.97 REMARK 500 O HOH B 306 O HOH B 419 3544 1.99 REMARK 500 O HOH B 374 O HOH A 386 3654 2.08 REMARK 500 O HOH B 389 O HOH A 393 3654 2.15 REMARK 500 O HOH B 443 O HOH A 440 3644 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 38 -169.28 -160.57 REMARK 500 ASN B 78 -169.00 -114.19 REMARK 500 ARG B 108 -110.64 -70.46 REMARK 500 TYR B 109 75.52 -66.88 REMARK 500 TYR B 111 86.84 -68.42 REMARK 500 VAL A 23 23.73 -144.78 REMARK 500 ASN A 78 -123.29 48.33 REMARK 500 ASN A 110 -73.90 -158.50 REMARK 500 TYR A 111 -25.74 -27.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 454 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 455 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A 447 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 448 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A 449 DISTANCE = 6.78 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6NA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KF3 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED TO PEG4000 REMARK 900 RELATED ID: 4YV5 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED TO SURAMIN INHIBITOR DBREF 6B83 B 1 122 UNP Q9I834 PA2H2_BOTMO 1 122 DBREF 6B83 A 1 122 UNP Q9I834 PA2H2_BOTMO 1 122 SEQADV 6B83 ALA B 115 UNP Q9I834 PHE 115 CONFLICT SEQADV 6B83 ALA A 115 UNP Q9I834 PHE 115 CONFLICT SEQRES 1 B 122 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 B 122 GLY LYS ASN PRO ALA LYS SER TYR GLY VAL TYR GLY CYS SEQRES 3 B 122 ASN CYS GLY VAL GLY GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 B 122 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 B 122 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 B 122 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 B 122 ASN SER CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 B 122 VAL ALA ILE CYS LEU ARG GLU ASN LEU ASP THR TYR ASN SEQRES 9 B 122 LYS LYS TYR ARG TYR ASN TYR LEU LYS PRO ALA CYS LYS SEQRES 10 B 122 LYS ALA ASP PRO CYS SEQRES 1 A 122 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 A 122 GLY LYS ASN PRO ALA LYS SER TYR GLY VAL TYR GLY CYS SEQRES 3 A 122 ASN CYS GLY VAL GLY GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 A 122 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 A 122 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 A 122 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 A 122 ASN SER CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 A 122 VAL ALA ILE CYS LEU ARG GLU ASN LEU ASP THR TYR ASN SEQRES 9 A 122 LYS LYS TYR ARG TYR ASN TYR LEU LYS PRO ALA CYS LYS SEQRES 10 A 122 LYS ALA ASP PRO CYS HET 6NA B 201 8 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HETNAM 6NA HEXANOIC ACID HETNAM SO4 SULFATE ION FORMUL 3 6NA C6 H12 O2 FORMUL 4 SO4 7(O4 S 2-) FORMUL 11 HOH *304(H2 O) HELIX 1 AA1 SER B 1 GLY B 14 1 14 HELIX 2 AA2 ASN B 16 GLY B 22 1 7 HELIX 3 AA3 ASP B 38 LYS B 53 1 16 HELIX 4 AA4 ASN B 79 ASN B 99 1 21 HELIX 5 AA5 LEU B 100 TYR B 103 5 4 HELIX 6 AA6 ASN B 104 ARG B 108 5 5 HELIX 7 AA7 LEU B 112 CYS B 116 5 5 HELIX 8 AA8 LEU A 2 GLY A 14 1 13 HELIX 9 AA9 ASN A 16 GLY A 22 1 7 HELIX 10 AB1 ASP A 38 LYS A 53 1 16 HELIX 11 AB2 ASN A 79 ASN A 99 1 21 HELIX 12 AB3 LEU A 100 TYR A 103 5 4 HELIX 13 AB4 ASN A 104 ARG A 108 5 5 HELIX 14 AB5 LEU A 112 CYS A 116 5 5 SHEET 1 AA1 2 TYR B 66 TRP B 68 0 SHEET 2 AA1 2 ILE B 73 CYS B 75 -1 O VAL B 74 N SER B 67 SHEET 1 AA2 2 TYR A 66 LYS A 69 0 SHEET 2 AA2 2 THR A 72 CYS A 75 -1 O VAL A 74 N SER A 67 SSBOND 1 CYS B 26 CYS B 116 1555 1555 2.03 SSBOND 2 CYS B 28 CYS B 44 1555 1555 2.03 SSBOND 3 CYS B 43 CYS B 95 1555 1555 2.04 SSBOND 4 CYS B 49 CYS B 122 1555 1555 2.04 SSBOND 5 CYS B 50 CYS B 88 1555 1555 2.03 SSBOND 6 CYS B 57 CYS B 81 1555 1555 2.03 SSBOND 7 CYS B 75 CYS B 86 1555 1555 2.03 SSBOND 8 CYS A 26 CYS A 116 1555 1555 2.03 SSBOND 9 CYS A 28 CYS A 44 1555 1555 2.03 SSBOND 10 CYS A 43 CYS A 95 1555 1555 2.03 SSBOND 11 CYS A 49 CYS A 122 1555 1555 2.03 SSBOND 12 CYS A 50 CYS A 88 1555 1555 2.03 SSBOND 13 CYS A 57 CYS A 81 1555 1555 2.03 SSBOND 14 CYS A 75 CYS A 86 1555 1555 2.03 CISPEP 1 TYR A 109 ASN A 110 0 -14.38 SITE 1 AC1 5 TYR B 21 CYS B 28 GLY B 29 HIS B 47 SITE 2 AC1 5 HOH B 345 SITE 1 AC2 7 LYS B 15 ASN B 16 LYS B 19 HOH B 304 SITE 2 AC2 7 HOH B 313 HOH B 340 HOH B 346 SITE 1 AC3 6 GLY B 32 ARG B 33 LYS B 52 HOH B 347 SITE 2 AC3 6 HOH B 360 HOH B 384 SITE 1 AC4 4 LYS B 15 LYS B 19 LYS B 105 ARG B 108 SITE 1 AC5 5 LYS A 15 ASN A 16 LYS A 19 HOH A 305 SITE 2 AC5 5 HOH A 311 SITE 1 AC6 4 LYS A 15 LYS A 19 LYS A 105 ARG A 108 SITE 1 AC7 3 GLY A 32 ARG A 33 HOH A 352 SITE 1 AC8 4 ASN A 104 LYS A 106 HOH A 369 LYS B 35 CRYST1 51.238 62.991 88.106 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019517 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011350 0.00000