HEADER TOXIN 05-OCT-17 6B84 TITLE CRYSTAL STRUCTURE OF MYOTOXIN II FROM BOTHROPS MOOJENI COMPND MOL_ID: 1; COMPND 2 MOLECULE: BASIC PHOSPHOLIPASE A2 HOMOLOG 2; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: SVPLA2 HOMOLOG,M-VI,MJTX-II,MYOTOXIN II SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOTHROPS MOOJENI; SOURCE 3 ORGANISM_COMMON: LANCE-HEADED VIPER; SOURCE 4 ORGANISM_TAXID: 98334; SOURCE 5 ORGAN: VENOM GLAND KEYWDS MYOTOXIN II, BOTHROPS MOOJENI, PHOSPHOLIPASE A2-LIKE, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR G.H.M.SALVADOR,J.I.DOS SANTOS,M.R.M.FONTES REVDAT 4 04-OCT-23 6B84 1 REMARK REVDAT 3 01-JAN-20 6B84 1 REMARK REVDAT 2 17-APR-19 6B84 1 REMARK REVDAT 1 03-OCT-18 6B84 0 JRNL AUTH G.H.M.SALVADOR,J.I.DOS SANTOS,R.J.BORGES,M.R.M.FONTES JRNL TITL STRUCTURAL EVIDENCE FOR A FATTY ACID-INDEPENDENT MYOTOXIC JRNL TITL 2 MECHANISM FOR A PHOSPHOLIPASE A2-LIKE TOXIN. JRNL REF BIOCHIM BIOPHYS ACTA V.1866 473 2018 JRNL REF 2 PROTEINS PROTEOM JRNL REFN ISSN 1570-9639 JRNL PMID 29287778 JRNL DOI 10.1016/J.BBAPAP.2017.12.008 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.4328 - 3.8174 1.00 2990 159 0.1828 0.2153 REMARK 3 2 3.8174 - 3.0312 1.00 2861 148 0.1689 0.1926 REMARK 3 3 3.0312 - 2.6484 1.00 2814 150 0.1979 0.2432 REMARK 3 4 2.6484 - 2.4064 1.00 2813 152 0.2086 0.2616 REMARK 3 5 2.4064 - 2.2340 1.00 2801 152 0.1992 0.2656 REMARK 3 6 2.2340 - 2.1024 1.00 2792 145 0.2028 0.2505 REMARK 3 7 2.1024 - 1.9971 0.99 2730 143 0.2139 0.2949 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1976 REMARK 3 ANGLE : 1.266 2640 REMARK 3 CHIRALITY : 0.044 268 REMARK 3 PLANARITY : 0.005 336 REMARK 3 DIHEDRAL : 12.713 738 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5408 -16.2270 20.8113 REMARK 3 T TENSOR REMARK 3 T11: 0.2705 T22: 0.2282 REMARK 3 T33: 0.2164 T12: -0.0017 REMARK 3 T13: -0.0099 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.0333 L22: 0.0157 REMARK 3 L33: 0.0510 L12: -0.0287 REMARK 3 L13: 0.0431 L23: -0.0439 REMARK 3 S TENSOR REMARK 3 S11: 0.2206 S12: 0.0321 S13: 0.0228 REMARK 3 S21: 0.1971 S22: 0.0173 S23: -0.2522 REMARK 3 S31: -0.0602 S32: -0.0398 S33: 0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6496 -17.7974 19.7096 REMARK 3 T TENSOR REMARK 3 T11: 0.3198 T22: 0.2276 REMARK 3 T33: 0.3124 T12: -0.0063 REMARK 3 T13: -0.0180 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.0786 L22: 0.1919 REMARK 3 L33: 0.0888 L12: 0.1495 REMARK 3 L13: 0.0399 L23: 0.0923 REMARK 3 S TENSOR REMARK 3 S11: -0.0548 S12: 0.1291 S13: -0.3596 REMARK 3 S21: -0.3983 S22: 0.2220 S23: -0.0440 REMARK 3 S31: 0.2036 S32: -0.2251 S33: 0.0004 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9299 -7.2277 19.0966 REMARK 3 T TENSOR REMARK 3 T11: 0.2580 T22: 0.1892 REMARK 3 T33: 0.2252 T12: -0.0047 REMARK 3 T13: 0.0039 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 0.0789 L22: 0.0413 REMARK 3 L33: 0.1038 L12: -0.0229 REMARK 3 L13: 0.0536 L23: -0.0784 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: 0.1853 S13: -0.1127 REMARK 3 S21: 0.0463 S22: -0.1174 S23: -0.0108 REMARK 3 S31: -0.0085 S32: 0.0440 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6856 -8.7880 18.2801 REMARK 3 T TENSOR REMARK 3 T11: 0.2481 T22: 0.2206 REMARK 3 T33: 0.3013 T12: -0.0023 REMARK 3 T13: 0.0353 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 0.2094 L22: 0.6037 REMARK 3 L33: 0.1391 L12: 0.2450 REMARK 3 L13: -0.0887 L23: 0.1572 REMARK 3 S TENSOR REMARK 3 S11: 0.1741 S12: 0.0333 S13: 0.2238 REMARK 3 S21: -0.0297 S22: -0.1667 S23: -0.2824 REMARK 3 S31: -0.0877 S32: 0.4265 S33: 0.0004 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5951 -12.4961 22.9022 REMARK 3 T TENSOR REMARK 3 T11: 0.2431 T22: 0.1809 REMARK 3 T33: 0.1912 T12: 0.0023 REMARK 3 T13: -0.0013 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.2442 L22: 0.8128 REMARK 3 L33: 0.6041 L12: -0.4434 REMARK 3 L13: -0.0211 L23: 0.3957 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: -0.1681 S13: 0.2735 REMARK 3 S21: -0.0102 S22: -0.0751 S23: 0.2310 REMARK 3 S31: 0.0911 S32: 0.0382 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3207 -6.8615 13.7852 REMARK 3 T TENSOR REMARK 3 T11: 0.2957 T22: 0.2985 REMARK 3 T33: 0.4753 T12: 0.0518 REMARK 3 T13: -0.0847 T23: -0.0390 REMARK 3 L TENSOR REMARK 3 L11: 0.2668 L22: 0.6364 REMARK 3 L33: 0.3271 L12: 0.0955 REMARK 3 L13: -0.3100 L23: -0.0644 REMARK 3 S TENSOR REMARK 3 S11: -0.3044 S12: 0.0621 S13: 0.8660 REMARK 3 S21: -0.3637 S22: 0.1207 S23: -0.4415 REMARK 3 S31: -0.0913 S32: 0.0805 S33: -0.0035 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2464 -26.9485 6.0869 REMARK 3 T TENSOR REMARK 3 T11: 0.2148 T22: 0.2102 REMARK 3 T33: 0.2200 T12: -0.0174 REMARK 3 T13: 0.0037 T23: -0.0368 REMARK 3 L TENSOR REMARK 3 L11: 0.7216 L22: 0.2761 REMARK 3 L33: 1.0266 L12: -0.0297 REMARK 3 L13: 0.4328 L23: 0.3458 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: -0.0475 S13: 0.0817 REMARK 3 S21: 0.0241 S22: 0.0227 S23: -0.1673 REMARK 3 S31: -0.0520 S32: 0.1138 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7612 -17.6348 1.7977 REMARK 3 T TENSOR REMARK 3 T11: 0.3944 T22: 0.2858 REMARK 3 T33: 0.3523 T12: 0.0084 REMARK 3 T13: -0.0180 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.0820 L22: 0.2529 REMARK 3 L33: 0.1962 L12: -0.4822 REMARK 3 L13: -0.3755 L23: 0.1592 REMARK 3 S TENSOR REMARK 3 S11: 0.1416 S12: 0.0063 S13: 0.7452 REMARK 3 S21: -0.0160 S22: -0.1367 S23: -0.0305 REMARK 3 S31: -0.5044 S32: -0.0697 S33: 0.0202 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8205 -31.6543 3.0119 REMARK 3 T TENSOR REMARK 3 T11: 0.2680 T22: 0.2570 REMARK 3 T33: 0.1868 T12: -0.0243 REMARK 3 T13: -0.0291 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 1.5567 L22: 0.0573 REMARK 3 L33: 0.3085 L12: -0.0405 REMARK 3 L13: 0.4098 L23: -0.0297 REMARK 3 S TENSOR REMARK 3 S11: 0.1436 S12: -0.0839 S13: -0.1352 REMARK 3 S21: -0.2460 S22: -0.1871 S23: 0.3427 REMARK 3 S31: 0.4532 S32: -0.1626 S33: 0.0024 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5061 -31.2882 3.9983 REMARK 3 T TENSOR REMARK 3 T11: 0.2459 T22: 0.2412 REMARK 3 T33: 0.2194 T12: 0.0116 REMARK 3 T13: 0.0021 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.2329 L22: 0.4369 REMARK 3 L33: 0.4895 L12: 0.0657 REMARK 3 L13: -0.0810 L23: 0.4585 REMARK 3 S TENSOR REMARK 3 S11: 0.0497 S12: 0.1909 S13: -0.1155 REMARK 3 S21: 0.0652 S22: 0.0429 S23: -0.0801 REMARK 3 S31: 0.1311 S32: 0.1507 S33: -0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2784 -22.4245 5.8523 REMARK 3 T TENSOR REMARK 3 T11: 0.3428 T22: 0.3273 REMARK 3 T33: 0.3111 T12: -0.0609 REMARK 3 T13: 0.0283 T23: -0.0731 REMARK 3 L TENSOR REMARK 3 L11: 0.1192 L22: 0.1595 REMARK 3 L33: 0.1220 L12: -0.1531 REMARK 3 L13: 0.1136 L23: -0.1541 REMARK 3 S TENSOR REMARK 3 S11: -0.0955 S12: 0.1226 S13: -0.0894 REMARK 3 S21: 0.0819 S22: -0.1008 S23: -0.0682 REMARK 3 S31: 0.2506 S32: 0.2952 S33: -0.0349 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B84 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230433. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.425 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25137 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.78100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4KF3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000, 0.1 M TRIS HCL, 0.2 M REMARK 280 LITHIUM SULFATE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.24400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.12200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.12200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 84.24400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 310 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 346 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 354 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 53 CG CD CE NZ REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 LYS A 117 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 20 O HOH B 301 1.94 REMARK 500 O HOH B 398 O HOH B 405 1.99 REMARK 500 O HOH A 333 O HOH A 371 2.07 REMARK 500 OG1 THR B 55 O HOH B 302 2.08 REMARK 500 OD1 ASP B 70 O HOH B 303 2.08 REMARK 500 O TRP A 68 O HOH A 301 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 372 O HOH A 383 4555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 78 -116.62 -77.22 REMARK 500 TYR B 109 70.98 -110.36 REMARK 500 VAL A 23 24.97 -140.14 REMARK 500 ASN A 78 -127.27 45.74 REMARK 500 TYR A 109 73.57 -116.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KF3 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED TO PEG4000 REMARK 900 RELATED ID: 4YV5 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED TO SURAMIN INHIBITOR DBREF 6B84 B 1 122 UNP Q9I834 PA2H2_BOTMO 1 122 DBREF 6B84 A 1 122 UNP Q9I834 PA2H2_BOTMO 1 122 SEQRES 1 B 122 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 B 122 GLY LYS ASN PRO ALA LYS SER TYR GLY VAL TYR GLY CYS SEQRES 3 B 122 ASN CYS GLY VAL GLY GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 B 122 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 B 122 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 B 122 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 B 122 ASN SER CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 B 122 VAL ALA ILE CYS LEU ARG GLU ASN LEU ASP THR TYR ASN SEQRES 9 B 122 LYS LYS TYR ARG TYR ASN TYR LEU LYS PRO PHE CYS LYS SEQRES 10 B 122 LYS ALA ASP PRO CYS SEQRES 1 A 122 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 A 122 GLY LYS ASN PRO ALA LYS SER TYR GLY VAL TYR GLY CYS SEQRES 3 A 122 ASN CYS GLY VAL GLY GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 A 122 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 A 122 LYS LEU THR GLY CYS ASP PRO LYS LYS ASP ARG TYR SER SEQRES 6 A 122 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 A 122 ASN SER CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 A 122 VAL ALA ILE CYS LEU ARG GLU ASN LEU ASP THR TYR ASN SEQRES 9 A 122 LYS LYS TYR ARG TYR ASN TYR LEU LYS PRO PHE CYS LYS SEQRES 10 A 122 LYS ALA ASP PRO CYS HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 203 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 HOH *222(H2 O) HELIX 1 AA1 SER B 1 GLY B 14 1 14 HELIX 2 AA2 ASN B 16 GLY B 22 1 7 HELIX 3 AA3 ASP B 38 LEU B 54 1 17 HELIX 4 AA4 ASN B 79 ASN B 99 1 21 HELIX 5 AA5 ASN B 104 ARG B 108 5 5 HELIX 6 AA6 LEU B 112 CYS B 116 5 5 HELIX 7 AA7 LEU A 2 GLY A 14 1 13 HELIX 8 AA8 ASN A 16 GLY A 22 1 7 HELIX 9 AA9 ASP A 38 LYS A 53 1 16 HELIX 10 AB1 ASN A 79 ASN A 99 1 21 HELIX 11 AB2 LEU A 100 TYR A 103 5 4 HELIX 12 AB3 LEU A 112 CYS A 116 5 5 SHEET 1 AA1 2 TYR B 66 LYS B 69 0 SHEET 2 AA1 2 THR B 72 CYS B 75 -1 O VAL B 74 N SER B 67 SHEET 1 AA2 2 TYR A 66 LYS A 69 0 SHEET 2 AA2 2 THR A 72 CYS A 75 -1 O VAL A 74 N SER A 67 SSBOND 1 CYS B 26 CYS B 116 1555 1555 2.04 SSBOND 2 CYS B 28 CYS B 44 1555 1555 2.06 SSBOND 3 CYS B 43 CYS B 95 1555 1555 2.03 SSBOND 4 CYS B 49 CYS B 122 1555 1555 2.04 SSBOND 5 CYS B 50 CYS B 88 1555 1555 2.02 SSBOND 6 CYS B 57 CYS B 81 1555 1555 2.04 SSBOND 7 CYS B 75 CYS B 86 1555 1555 2.02 SSBOND 8 CYS A 26 CYS A 116 1555 1555 2.03 SSBOND 9 CYS A 28 CYS A 44 1555 1555 2.04 SSBOND 10 CYS A 43 CYS A 95 1555 1555 2.04 SSBOND 11 CYS A 49 CYS A 122 1555 1555 2.05 SSBOND 12 CYS A 50 CYS A 88 1555 1555 2.03 SSBOND 13 CYS A 57 CYS A 81 1555 1555 2.03 SSBOND 14 CYS A 75 CYS A 86 1555 1555 2.03 SITE 1 AC1 4 GLY B 32 ARG B 33 LYS B 52 HOH B 352 SITE 1 AC2 4 ALA B 39 ARG B 42 PRO B 121 HOH B 307 SITE 1 AC3 5 LYS B 15 LYS B 19 LYS B 105 ARG B 108 SITE 2 AC3 5 HOH B 342 SITE 1 AC4 4 GLY A 32 ARG A 33 LYS A 52 HOH A 346 SITE 1 AC5 5 ARG A 97 LYS A 117 LYS A 118 HOH A 307 SITE 2 AC5 5 HOH A 310 SITE 1 AC6 5 LYS A 15 LYS A 19 LYS A 105 ARG A 108 SITE 2 AC6 5 HOH A 308 CRYST1 63.848 63.848 126.366 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015662 0.009043 0.000000 0.00000 SCALE2 0.000000 0.018085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007914 0.00000