HEADER LIPID TRANSPORT/ACTIVATOR 06-OCT-17 6B8B TITLE E. COLI LPTB IN COMPLEX WITH ADP AND A NOVOBIOCIN DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPOLYSACCHARIDE EXPORT SYSTEM ATP-BINDING PROTEIN LPTB; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.3.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: LPTB, YHBG, B3201, JW3168; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI KRX; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1452720 KEYWDS LPTB, ABC TRANSPORTER, LPS TRANSPORT, LIPID TRANSPORT, LIPID KEYWDS 2 TRANSPORT-ACTIVATOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.D.MANDLER,T.W.OWENS,M.B.LAZARUS,J.M.MAY,D.K.KAHNE REVDAT 5 04-OCT-23 6B8B 1 REMARK REVDAT 4 06-JAN-21 6B8B 1 COMPND AUTHOR HETNAM LINK REVDAT 3 01-JAN-20 6B8B 1 REMARK REVDAT 2 13-DEC-17 6B8B 1 JRNL REVDAT 1 06-DEC-17 6B8B 0 JRNL AUTH J.M.MAY,T.W.OWENS,M.D.MANDLER,B.W.SIMPSON,M.B.LAZARUS, JRNL AUTH 2 D.J.SHERMAN,R.M.DAVIS,S.OKUDA,W.MASSEFSKI,N.RUIZ,D.KAHNE JRNL TITL THE ANTIBIOTIC NOVOBIOCIN BINDS AND ACTIVATES THE ATPASE JRNL TITL 2 THAT POWERS LIPOPOLYSACCHARIDE TRANSPORT. JRNL REF J. AM. CHEM. SOC. V. 139 17221 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 29135241 JRNL DOI 10.1021/JACS.7B07736 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11_2567 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 30170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.7259 - 4.3356 0.95 2595 122 0.1636 0.1968 REMARK 3 2 4.3356 - 3.4417 0.95 2581 126 0.1446 0.1815 REMARK 3 3 3.4417 - 3.0068 0.96 2617 141 0.1604 0.2087 REMARK 3 4 3.0068 - 2.7319 0.97 2617 145 0.1775 0.2205 REMARK 3 5 2.7319 - 2.5361 0.97 2656 122 0.1821 0.2387 REMARK 3 6 2.5361 - 2.3866 0.96 2593 155 0.1876 0.2695 REMARK 3 7 2.3866 - 2.2671 0.96 2625 125 0.2045 0.2164 REMARK 3 8 2.2671 - 2.1684 0.96 2579 131 0.2130 0.2591 REMARK 3 9 2.1684 - 2.0849 0.97 2672 147 0.2265 0.2715 REMARK 3 10 2.0849 - 2.0130 0.97 2625 158 0.2490 0.3258 REMARK 3 11 2.0130 - 1.9500 0.94 2482 156 0.2864 0.2707 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1942 REMARK 3 ANGLE : 0.912 2651 REMARK 3 CHIRALITY : 0.179 309 REMARK 3 PLANARITY : 0.003 337 REMARK 3 DIHEDRAL : 17.010 1163 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:11) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2327 -1.3836 10.0977 REMARK 3 T TENSOR REMARK 3 T11: 0.1762 T22: 0.1620 REMARK 3 T33: 0.2330 T12: 0.0021 REMARK 3 T13: 0.0011 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 0.0712 L22: 0.1091 REMARK 3 L33: 0.0995 L12: 0.0965 REMARK 3 L13: -0.1589 L23: -0.0801 REMARK 3 S TENSOR REMARK 3 S11: 0.2207 S12: 0.0504 S13: -0.1388 REMARK 3 S21: -0.1519 S22: -0.1992 S23: -0.0128 REMARK 3 S31: -0.1062 S32: -0.2627 S33: -0.0016 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 12:20) REMARK 3 ORIGIN FOR THE GROUP (A): -28.8410 12.3451 16.7182 REMARK 3 T TENSOR REMARK 3 T11: 0.2377 T22: 0.2875 REMARK 3 T33: 0.4436 T12: 0.0721 REMARK 3 T13: 0.0568 T23: -0.0671 REMARK 3 L TENSOR REMARK 3 L11: 0.0363 L22: 0.0170 REMARK 3 L33: 0.0315 L12: -0.0440 REMARK 3 L13: -0.0439 L23: 0.0012 REMARK 3 S TENSOR REMARK 3 S11: -0.0529 S12: 0.1430 S13: 0.8907 REMARK 3 S21: 0.0582 S22: 0.0269 S23: 0.8671 REMARK 3 S31: 0.1354 S32: -0.3298 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 21:55) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2302 4.2382 11.5288 REMARK 3 T TENSOR REMARK 3 T11: 0.1427 T22: 0.1095 REMARK 3 T33: 0.1679 T12: -0.0130 REMARK 3 T13: -0.0047 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.6065 L22: 0.1372 REMARK 3 L33: 0.4740 L12: -0.0245 REMARK 3 L13: 0.2402 L23: -0.1675 REMARK 3 S TENSOR REMARK 3 S11: 0.0735 S12: 0.0016 S13: -0.0053 REMARK 3 S21: -0.0158 S22: -0.0773 S23: 0.0771 REMARK 3 S31: -0.1049 S32: -0.0531 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 56:76) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4225 -6.7065 17.0641 REMARK 3 T TENSOR REMARK 3 T11: 0.2115 T22: 0.1546 REMARK 3 T33: 0.2293 T12: -0.0440 REMARK 3 T13: 0.0383 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.1752 L22: 0.1526 REMARK 3 L33: 0.2418 L12: -0.0158 REMARK 3 L13: -0.0993 L23: 0.0312 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: -0.1581 S13: -0.1545 REMARK 3 S21: 0.2666 S22: -0.1263 S23: 0.2842 REMARK 3 S31: 0.3555 S32: -0.2167 S33: 0.0021 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 77:89) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1118 1.5706 20.6224 REMARK 3 T TENSOR REMARK 3 T11: 0.2612 T22: 0.1890 REMARK 3 T33: 0.1389 T12: -0.0339 REMARK 3 T13: -0.0032 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.2258 L22: 0.1711 REMARK 3 L33: 0.0752 L12: 0.1722 REMARK 3 L13: -0.1891 L23: 0.1504 REMARK 3 S TENSOR REMARK 3 S11: 0.1252 S12: -0.4020 S13: 0.0252 REMARK 3 S21: -0.0215 S22: -0.2241 S23: 0.0821 REMARK 3 S31: 0.1199 S32: 0.1346 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 90:108) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6981 -2.5683 29.0205 REMARK 3 T TENSOR REMARK 3 T11: 0.2495 T22: 0.3111 REMARK 3 T33: 0.1815 T12: -0.0056 REMARK 3 T13: -0.0047 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 0.0757 L22: 0.1401 REMARK 3 L33: 0.3780 L12: -0.2401 REMARK 3 L13: 0.3795 L23: -0.2749 REMARK 3 S TENSOR REMARK 3 S11: 0.1069 S12: 0.1202 S13: -0.1137 REMARK 3 S21: 0.1822 S22: -0.1054 S23: 0.0910 REMARK 3 S31: -0.0203 S32: 0.2043 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 109:155) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5915 -0.7971 22.6080 REMARK 3 T TENSOR REMARK 3 T11: 0.2228 T22: 0.4587 REMARK 3 T33: 0.1853 T12: 0.0449 REMARK 3 T13: -0.0108 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 1.5882 L22: 0.8291 REMARK 3 L33: 1.2814 L12: 0.6922 REMARK 3 L13: 0.6517 L23: -0.1702 REMARK 3 S TENSOR REMARK 3 S11: 0.0845 S12: 0.7488 S13: -0.1189 REMARK 3 S21: 0.0902 S22: 0.0887 S23: -0.0772 REMARK 3 S31: 0.1311 S32: 0.5911 S33: 0.1741 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 156:177) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0648 6.9906 11.9780 REMARK 3 T TENSOR REMARK 3 T11: 0.1293 T22: 0.1389 REMARK 3 T33: 0.1647 T12: -0.0257 REMARK 3 T13: 0.0274 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 0.2704 L22: -0.0040 REMARK 3 L33: 0.2371 L12: -0.0582 REMARK 3 L13: 0.0783 L23: 0.0196 REMARK 3 S TENSOR REMARK 3 S11: 0.0676 S12: -0.2269 S13: 0.0334 REMARK 3 S21: -0.0547 S22: 0.0182 S23: -0.0280 REMARK 3 S31: 0.0572 S32: 0.0850 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 178:186) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0017 -1.5864 6.6173 REMARK 3 T TENSOR REMARK 3 T11: 0.2117 T22: 0.1692 REMARK 3 T33: 0.2789 T12: -0.0325 REMARK 3 T13: -0.0110 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.0177 L22: 0.0082 REMARK 3 L33: -0.0077 L12: 0.0830 REMARK 3 L13: 0.0148 L23: -0.0071 REMARK 3 S TENSOR REMARK 3 S11: 0.0492 S12: -0.0725 S13: -0.1943 REMARK 3 S21: -0.0448 S22: -0.0935 S23: -0.0978 REMARK 3 S31: -0.0435 S32: 0.0441 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 187:200) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7453 8.4831 6.3303 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.1375 REMARK 3 T33: 0.2006 T12: -0.0107 REMARK 3 T13: -0.0140 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.1109 L22: 0.2466 REMARK 3 L33: 0.1196 L12: 0.0496 REMARK 3 L13: 0.1130 L23: 0.1729 REMARK 3 S TENSOR REMARK 3 S11: -0.1298 S12: -0.0397 S13: 0.1715 REMARK 3 S21: 0.1898 S22: 0.0806 S23: -0.2246 REMARK 3 S31: 0.0918 S32: -0.0604 S33: 0.0027 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 201:225) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1021 7.6319 0.0716 REMARK 3 T TENSOR REMARK 3 T11: 0.1488 T22: 0.1459 REMARK 3 T33: 0.1584 T12: 0.0100 REMARK 3 T13: -0.0045 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.1673 L22: 0.0459 REMARK 3 L33: 0.3846 L12: -0.0333 REMARK 3 L13: 0.0962 L23: -0.0396 REMARK 3 S TENSOR REMARK 3 S11: 0.0616 S12: 0.2804 S13: 0.0356 REMARK 3 S21: -0.0819 S22: -0.0904 S23: -0.0092 REMARK 3 S31: -0.0576 S32: -0.1448 S33: -0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 226:232) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6509 16.3589 -6.6306 REMARK 3 T TENSOR REMARK 3 T11: 0.2836 T22: 0.2913 REMARK 3 T33: 0.2430 T12: 0.0638 REMARK 3 T13: -0.0457 T23: 0.0507 REMARK 3 L TENSOR REMARK 3 L11: 0.0676 L22: 0.0358 REMARK 3 L33: 0.0567 L12: 0.0472 REMARK 3 L13: -0.0147 L23: -0.0735 REMARK 3 S TENSOR REMARK 3 S11: 0.2969 S12: 0.2791 S13: 0.0104 REMARK 3 S21: -0.1335 S22: -0.4098 S23: 0.7348 REMARK 3 S31: -0.0249 S32: 0.1605 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B8B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230440. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52602 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 61.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.67500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4P32 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES PH = 6.5, 30% W/V PEG4000, REMARK 280 1.3MM NOVOBIOCIN-ADAMANTYL, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.01500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.01500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 504 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 235 REMARK 465 GLY A 236 REMARK 465 GLU A 237 REMARK 465 ASP A 238 REMARK 465 PHE A 239 REMARK 465 ARG A 240 REMARK 465 LEU A 241 REMARK 465 GLU A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 210 N CA C O CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 85 O HOH A 401 2.15 REMARK 500 O HOH A 464 O HOH A 494 2.16 REMARK 500 OE1 GLU A 120 O HOH A 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 63 -120.47 52.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 43 OG1 REMARK 620 2 ADP A 303 O2B 91.5 REMARK 620 3 HOH A 401 O 86.4 177.6 REMARK 620 4 HOH A 418 O 175.0 90.5 91.6 REMARK 620 5 HOH A 433 O 91.9 91.2 87.6 92.6 REMARK 620 6 HOH A 446 O 88.5 94.2 87.0 86.7 174.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CZJ A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6B89 RELATED DB: PDB DBREF 6B8B A 2 241 UNP P0A9V1 LPTB_ECOLI 2 241 SEQADV 6B8B GLU A 242 UNP P0A9V1 EXPRESSION TAG SEQADV 6B8B HIS A 243 UNP P0A9V1 EXPRESSION TAG SEQADV 6B8B HIS A 244 UNP P0A9V1 EXPRESSION TAG SEQADV 6B8B HIS A 245 UNP P0A9V1 EXPRESSION TAG SEQADV 6B8B HIS A 246 UNP P0A9V1 EXPRESSION TAG SEQADV 6B8B HIS A 247 UNP P0A9V1 EXPRESSION TAG SEQADV 6B8B HIS A 248 UNP P0A9V1 EXPRESSION TAG SEQADV 6B8B HIS A 249 UNP P0A9V1 EXPRESSION TAG SEQADV 6B8B HIS A 250 UNP P0A9V1 EXPRESSION TAG SEQRES 1 A 249 ALA THR LEU THR ALA LYS ASN LEU ALA LYS ALA TYR LYS SEQRES 2 A 249 GLY ARG ARG VAL VAL GLU ASP VAL SER LEU THR VAL ASN SEQRES 3 A 249 SER GLY GLU ILE VAL GLY LEU LEU GLY PRO ASN GLY ALA SEQRES 4 A 249 GLY LYS THR THR THR PHE TYR MET VAL VAL GLY ILE VAL SEQRES 5 A 249 PRO ARG ASP ALA GLY ASN ILE ILE ILE ASP ASP ASP ASP SEQRES 6 A 249 ILE SER LEU LEU PRO LEU HIS ALA ARG ALA ARG ARG GLY SEQRES 7 A 249 ILE GLY TYR LEU PRO GLN GLU ALA SER ILE PHE ARG ARG SEQRES 8 A 249 LEU SER VAL TYR ASP ASN LEU MET ALA VAL LEU GLN ILE SEQRES 9 A 249 ARG ASP ASP LEU SER ALA GLU GLN ARG GLU ASP ARG ALA SEQRES 10 A 249 ASN GLU LEU MET GLU GLU PHE HIS ILE GLU HIS LEU ARG SEQRES 11 A 249 ASP SER MET GLY GLN SER LEU SER GLY GLY GLU ARG ARG SEQRES 12 A 249 ARG VAL GLU ILE ALA ARG ALA LEU ALA ALA ASN PRO LYS SEQRES 13 A 249 PHE ILE LEU LEU ASP GLU PRO PHE ALA GLY VAL ASP PRO SEQRES 14 A 249 ILE SER VAL ILE ASP ILE LYS ARG ILE ILE GLU HIS LEU SEQRES 15 A 249 ARG ASP SER GLY LEU GLY VAL LEU ILE THR ASP HIS ASN SEQRES 16 A 249 VAL ARG GLU THR LEU ALA VAL CYS GLU ARG ALA TYR ILE SEQRES 17 A 249 VAL SER GLN GLY HIS LEU ILE ALA HIS GLY THR PRO THR SEQRES 18 A 249 GLU ILE LEU GLN ASP GLU HIS VAL LYS ARG VAL TYR LEU SEQRES 19 A 249 GLY GLU ASP PHE ARG LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 20 A 249 HIS HIS HET MG A 301 1 HET CZJ A 302 80 HET ADP A 303 39 HETNAM MG MAGNESIUM ION HETNAM CZJ (3S,5S,7S)-N-{7-[(3-O-CARBAMOYL-6-DEOXY-5-METHYL-4-O- HETNAM 2 CZJ METHYL-BETA-D-GULOPYRANOSYL)OXY]-4-HYDROXY-8-METHYL-2- HETNAM 3 CZJ OXO-2H-1-BEN ZOPYRAN-3-YL}TRICYCLO[3.3.1.1~3, HETNAM 4 CZJ 7~]DECANE-1-CARBOXAMIDE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETSYN CZJ NOVOBIOCIN DERIVATIVE FORMUL 2 MG MG 2+ FORMUL 3 CZJ C30 H38 N2 O10 FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 HOH *105(H2 O) HELIX 1 AA1 GLY A 41 GLY A 51 1 11 HELIX 2 AA2 PRO A 71 ARG A 78 1 8 HELIX 3 AA3 SER A 94 GLN A 104 1 11 HELIX 4 AA4 SER A 110 PHE A 125 1 16 HELIX 5 AA5 ILE A 127 ARG A 131 5 5 HELIX 6 AA6 MET A 134 LEU A 138 5 5 HELIX 7 AA7 SER A 139 ALA A 153 1 15 HELIX 8 AA8 ASP A 169 SER A 186 1 18 HELIX 9 AA9 ASN A 196 ALA A 202 1 7 HELIX 10 AB1 THR A 220 LEU A 225 1 6 HELIX 11 AB2 ASP A 227 TYR A 234 1 8 SHEET 1 AA1 4 ARG A 16 ASN A 27 0 SHEET 2 AA1 4 THR A 3 TYR A 13 -1 N LYS A 11 O VAL A 19 SHEET 3 AA1 4 ALA A 57 ILE A 62 -1 O ILE A 61 N THR A 5 SHEET 4 AA1 4 ASP A 65 ASP A 66 -1 O ASP A 65 N ILE A 62 SHEET 1 AA2 6 ILE A 80 LEU A 83 0 SHEET 2 AA2 6 PHE A 158 LEU A 161 1 O LEU A 160 N LEU A 83 SHEET 3 AA2 6 GLY A 189 ASP A 194 1 O LEU A 191 N LEU A 161 SHEET 4 AA2 6 ILE A 31 LEU A 35 1 N VAL A 32 O VAL A 190 SHEET 5 AA2 6 ARG A 206 SER A 211 1 O TYR A 208 N GLY A 33 SHEET 6 AA2 6 HIS A 214 GLY A 219 -1 O HIS A 214 N SER A 211 LINK OG1 THR A 43 MG MG A 301 1555 1555 2.03 LINK MG MG A 301 O2B ADP A 303 1555 1555 2.07 LINK MG MG A 301 O HOH A 401 1555 1555 2.05 LINK MG MG A 301 O HOH A 418 1555 1555 2.05 LINK MG MG A 301 O HOH A 433 1555 1555 1.91 LINK MG MG A 301 O HOH A 446 1555 1555 1.97 SITE 1 AC1 6 THR A 43 ADP A 303 HOH A 401 HOH A 418 SITE 2 AC1 6 HOH A 433 HOH A 446 SITE 1 AC2 15 LEU A 72 ALA A 76 PRO A 84 GLU A 86 SITE 2 AC2 15 ALA A 87 PHE A 90 ARG A 91 ARG A 92 SITE 3 AC2 15 ALA A 101 VAL A 102 ARG A 150 HOH A 406 SITE 4 AC2 15 HOH A 417 HOH A 428 HOH A 465 SITE 1 AC3 19 TYR A 13 ARG A 16 VAL A 18 GLY A 39 SITE 2 AC3 19 ALA A 40 GLY A 41 LYS A 42 THR A 43 SITE 3 AC3 19 THR A 44 ASP A 65 ARG A 78 MG A 301 SITE 4 AC3 19 HOH A 405 HOH A 418 HOH A 433 HOH A 446 SITE 5 AC3 19 HOH A 460 HOH A 463 HOH A 484 CRYST1 104.030 34.780 62.710 90.00 101.38 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009613 0.000000 0.001935 0.00000 SCALE2 0.000000 0.028752 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016266 0.00000