HEADER HYDROLASE 10-OCT-17 6B98 TITLE PDE2 IN COMPLEX WITH COMPOUND 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGMP-DEPENDENT 3',5'-CYCLIC PHOSPHODIESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYCLIC GMP-STIMULATED PHOSPHODIESTERASE,CGSPDE; COMPND 5 EC: 3.1.4.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE2A; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PHOSPHODIESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LU REVDAT 3 06-MAR-24 6B98 1 REMARK LINK REVDAT 2 29-NOV-17 6B98 1 JRNL REVDAT 1 22-NOV-17 6B98 0 JRNL AUTH A.B.FORSTER,P.ABEYWICKREMA,J.BUNDA,C.D.COX,T.D.CABALU, JRNL AUTH 2 M.EGBERTSON,J.FAY,K.GETTY,D.HALL,M.KORNIENKO,J.LU, JRNL AUTH 3 G.PARTHASARATHY,J.REID,S.SHARMA,W.D.SHIPE,S.M.SMITH, JRNL AUTH 4 S.SOISSON,S.J.STACHEL,H.P.SU,D.WANG,R.BERGER JRNL TITL THE IDENTIFICATION OF A NOVEL LEAD CLASS FOR JRNL TITL 2 PHOSPHODIESTERASE 2 INHIBITION BY FRAGMENT-BASED DRUG JRNL TITL 3 DESIGN. JRNL REF BIOORG. MED. CHEM. LETT. V. 27 5167 2017 JRNL REFN ESSN 1464-3405 JRNL PMID 29113762 JRNL DOI 10.1016/J.BMCL.2017.10.054 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.6 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 49966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2530 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3662 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2240 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3469 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.27 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 193 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5551 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 14.06840 REMARK 3 B22 (A**2) : -6.23240 REMARK 3 B33 (A**2) : -7.83600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.270 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.185 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.161 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.183 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.161 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5738 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7765 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1971 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 131 ; 8.000 ; HARMONIC REMARK 3 GENERAL PLANES : 835 ; 8.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5738 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 747 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7056 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.15 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.07 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B98 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230423. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50203 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 47.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG8000, 0.1M HEPES PH7.5, 1MM REMARK 280 TCEP, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.01700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.26300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.09300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.26300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.01700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.09300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 547 REMARK 465 HIS A 548 REMARK 465 HIS A 549 REMARK 465 HIS A 550 REMARK 465 HIS A 551 REMARK 465 HIS A 552 REMARK 465 HIS A 553 REMARK 465 GLU A 554 REMARK 465 ASN A 555 REMARK 465 LEU A 556 REMARK 465 TYR A 557 REMARK 465 PHE A 558 REMARK 465 GLN A 559 REMARK 465 GLY A 560 REMARK 465 GLU A 561 REMARK 465 LEU A 562 REMARK 465 SER A 563 REMARK 465 ASP A 573 REMARK 465 ASP A 574 REMARK 465 ASP A 575 REMARK 465 ASP A 576 REMARK 465 LYS A 577 REMARK 465 SER A 578 REMARK 465 ASP A 579 REMARK 465 ASP A 580 REMARK 465 GLU A 581 REMARK 465 ASP A 917 REMARK 465 GLU A 918 REMARK 465 GLU A 919 REMARK 465 MET B 547 REMARK 465 HIS B 548 REMARK 465 HIS B 549 REMARK 465 HIS B 550 REMARK 465 HIS B 551 REMARK 465 HIS B 552 REMARK 465 HIS B 553 REMARK 465 GLU B 554 REMARK 465 ASN B 555 REMARK 465 LEU B 556 REMARK 465 TYR B 557 REMARK 465 PHE B 558 REMARK 465 GLN B 559 REMARK 465 GLY B 560 REMARK 465 GLU B 561 REMARK 465 ASP B 574 REMARK 465 ASP B 575 REMARK 465 ASP B 576 REMARK 465 LYS B 577 REMARK 465 SER B 578 REMARK 465 ASP B 579 REMARK 465 ASP B 580 REMARK 465 GLU B 918 REMARK 465 GLU B 919 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 584 CG CD CE NZ REMARK 470 HIS A 587 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 588 CG OD1 OD2 REMARK 470 LYS A 633 CG CD CE NZ REMARK 470 ARG A 751 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 778 CG CD CE NZ REMARK 470 GLN A 781 CG CD OE1 NE2 REMARK 470 LYS A 782 CG CD CE NZ REMARK 470 GLU A 785 CG CD OE1 OE2 REMARK 470 ARG A 790 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 791 CG OD1 ND2 REMARK 470 LYS A 793 CG CD CE NZ REMARK 470 ARG A 797 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 897 CG CD CE NZ REMARK 470 HIS A 900 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 901 CG CD CE NZ REMARK 470 LEU B 562 CG CD1 CD2 REMARK 470 GLU B 581 CG CD OE1 OE2 REMARK 470 THR B 583 OG1 CG2 REMARK 470 LYS B 584 CG CD CE NZ REMARK 470 GLU B 722 CG CD OE1 OE2 REMARK 470 LYS B 778 CG CD CE NZ REMARK 470 LYS B 782 CG CD CE NZ REMARK 470 ARG B 843 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 846 CG CD OE1 OE2 REMARK 470 ARG B 905 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 917 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 680 -36.60 -133.06 REMARK 500 HIS A 795 -31.29 -37.71 REMARK 500 ILE A 866 -69.22 -104.52 REMARK 500 LYS B 814 -157.65 -99.19 REMARK 500 LYS B 901 23.78 -149.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 660 NE2 REMARK 620 2 HIS A 696 NE2 99.5 REMARK 620 3 ASP A 697 OD2 91.2 91.9 REMARK 620 4 ASP A 808 OD1 90.4 87.9 178.4 REMARK 620 5 HOH A1121 O 155.5 105.0 88.6 90.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 697 OD1 REMARK 620 2 HOH A1110 O 84.1 REMARK 620 3 HOH A1121 O 93.4 100.4 REMARK 620 4 HOH A1127 O 163.3 82.4 98.5 REMARK 620 5 HOH A1160 O 92.2 87.3 170.9 77.5 REMARK 620 6 HOH A1165 O 105.0 168.6 86.3 87.4 85.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 660 NE2 REMARK 620 2 HIS B 696 NE2 99.3 REMARK 620 3 ASP B 697 OD2 92.7 84.5 REMARK 620 4 ASP B 808 OD1 91.9 90.3 173.5 REMARK 620 5 HOH B1143 O 148.2 112.3 87.6 90.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 697 OD1 REMARK 620 2 HOH B1102 O 76.4 REMARK 620 3 HOH B1143 O 92.7 101.8 REMARK 620 4 HOH B1145 O 90.2 77.8 177.0 REMARK 620 5 HOH B1151 O 109.7 171.2 84.5 95.5 REMARK 620 6 HOH B1188 O 149.9 73.6 95.0 82.0 100.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D07 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D07 B 1003 DBREF 6B98 A 578 919 UNP O00408 PDE2A_HUMAN 322 663 DBREF 6B98 B 578 919 UNP O00408 PDE2A_HUMAN 322 663 SEQADV 6B98 MET A 547 UNP O00408 EXPRESSION TAG SEQADV 6B98 HIS A 548 UNP O00408 EXPRESSION TAG SEQADV 6B98 HIS A 549 UNP O00408 EXPRESSION TAG SEQADV 6B98 HIS A 550 UNP O00408 EXPRESSION TAG SEQADV 6B98 HIS A 551 UNP O00408 EXPRESSION TAG SEQADV 6B98 HIS A 552 UNP O00408 EXPRESSION TAG SEQADV 6B98 HIS A 553 UNP O00408 EXPRESSION TAG SEQADV 6B98 GLU A 554 UNP O00408 EXPRESSION TAG SEQADV 6B98 ASN A 555 UNP O00408 EXPRESSION TAG SEQADV 6B98 LEU A 556 UNP O00408 EXPRESSION TAG SEQADV 6B98 TYR A 557 UNP O00408 EXPRESSION TAG SEQADV 6B98 PHE A 558 UNP O00408 EXPRESSION TAG SEQADV 6B98 GLN A 559 UNP O00408 EXPRESSION TAG SEQADV 6B98 GLY A 560 UNP O00408 EXPRESSION TAG SEQADV 6B98 GLU A 561 UNP O00408 EXPRESSION TAG SEQADV 6B98 LEU A 562 UNP O00408 EXPRESSION TAG SEQADV 6B98 SER A 563 UNP O00408 EXPRESSION TAG SEQADV 6B98 THR A 564 UNP O00408 EXPRESSION TAG SEQADV 6B98 SER A 565 UNP O00408 EXPRESSION TAG SEQADV 6B98 LEU A 566 UNP O00408 EXPRESSION TAG SEQADV 6B98 TYR A 567 UNP O00408 EXPRESSION TAG SEQADV 6B98 LYS A 568 UNP O00408 EXPRESSION TAG SEQADV 6B98 LYS A 569 UNP O00408 EXPRESSION TAG SEQADV 6B98 ALA A 570 UNP O00408 EXPRESSION TAG SEQADV 6B98 GLY A 571 UNP O00408 EXPRESSION TAG SEQADV 6B98 PHE A 572 UNP O00408 EXPRESSION TAG SEQADV 6B98 ASP A 573 UNP O00408 EXPRESSION TAG SEQADV 6B98 ASP A 574 UNP O00408 EXPRESSION TAG SEQADV 6B98 ASP A 575 UNP O00408 EXPRESSION TAG SEQADV 6B98 ASP A 576 UNP O00408 EXPRESSION TAG SEQADV 6B98 LYS A 577 UNP O00408 EXPRESSION TAG SEQADV 6B98 MET B 547 UNP O00408 EXPRESSION TAG SEQADV 6B98 HIS B 548 UNP O00408 EXPRESSION TAG SEQADV 6B98 HIS B 549 UNP O00408 EXPRESSION TAG SEQADV 6B98 HIS B 550 UNP O00408 EXPRESSION TAG SEQADV 6B98 HIS B 551 UNP O00408 EXPRESSION TAG SEQADV 6B98 HIS B 552 UNP O00408 EXPRESSION TAG SEQADV 6B98 HIS B 553 UNP O00408 EXPRESSION TAG SEQADV 6B98 GLU B 554 UNP O00408 EXPRESSION TAG SEQADV 6B98 ASN B 555 UNP O00408 EXPRESSION TAG SEQADV 6B98 LEU B 556 UNP O00408 EXPRESSION TAG SEQADV 6B98 TYR B 557 UNP O00408 EXPRESSION TAG SEQADV 6B98 PHE B 558 UNP O00408 EXPRESSION TAG SEQADV 6B98 GLN B 559 UNP O00408 EXPRESSION TAG SEQADV 6B98 GLY B 560 UNP O00408 EXPRESSION TAG SEQADV 6B98 GLU B 561 UNP O00408 EXPRESSION TAG SEQADV 6B98 LEU B 562 UNP O00408 EXPRESSION TAG SEQADV 6B98 SER B 563 UNP O00408 EXPRESSION TAG SEQADV 6B98 THR B 564 UNP O00408 EXPRESSION TAG SEQADV 6B98 SER B 565 UNP O00408 EXPRESSION TAG SEQADV 6B98 LEU B 566 UNP O00408 EXPRESSION TAG SEQADV 6B98 TYR B 567 UNP O00408 EXPRESSION TAG SEQADV 6B98 LYS B 568 UNP O00408 EXPRESSION TAG SEQADV 6B98 LYS B 569 UNP O00408 EXPRESSION TAG SEQADV 6B98 ALA B 570 UNP O00408 EXPRESSION TAG SEQADV 6B98 GLY B 571 UNP O00408 EXPRESSION TAG SEQADV 6B98 PHE B 572 UNP O00408 EXPRESSION TAG SEQADV 6B98 ASP B 573 UNP O00408 EXPRESSION TAG SEQADV 6B98 ASP B 574 UNP O00408 EXPRESSION TAG SEQADV 6B98 ASP B 575 UNP O00408 EXPRESSION TAG SEQADV 6B98 ASP B 576 UNP O00408 EXPRESSION TAG SEQADV 6B98 LYS B 577 UNP O00408 EXPRESSION TAG SEQRES 1 A 373 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 A 373 GLY GLU LEU SER THR SER LEU TYR LYS LYS ALA GLY PHE SEQRES 3 A 373 ASP ASP ASP ASP LYS SER ASP ASP GLU TYR THR LYS LEU SEQRES 4 A 373 LEU HIS ASP GLY ILE GLN PRO VAL ALA ALA ILE ASP SER SEQRES 5 A 373 ASN PHE ALA SER PHE THR TYR THR PRO ARG SER LEU PRO SEQRES 6 A 373 GLU ASP ASP THR SER MET ALA ILE LEU SER MET LEU GLN SEQRES 7 A 373 ASP MET ASN PHE ILE ASN ASN TYR LYS ILE ASP CYS PRO SEQRES 8 A 373 THR LEU ALA ARG PHE CYS LEU MET VAL LYS LYS GLY TYR SEQRES 9 A 373 ARG ASP PRO PRO TYR HIS ASN TRP MET HIS ALA PHE SER SEQRES 10 A 373 VAL SER HIS PHE CYS TYR LEU LEU TYR LYS ASN LEU GLU SEQRES 11 A 373 LEU THR ASN TYR LEU GLU ASP ILE GLU ILE PHE ALA LEU SEQRES 12 A 373 PHE ILE SER CYS MET CYS HIS ASP LEU ASP HIS ARG GLY SEQRES 13 A 373 THR ASN ASN SER PHE GLN VAL ALA SER LYS SER VAL LEU SEQRES 14 A 373 ALA ALA LEU TYR SER SER GLU GLY SER VAL MET GLU ARG SEQRES 15 A 373 HIS HIS PHE ALA GLN ALA ILE ALA ILE LEU ASN THR HIS SEQRES 16 A 373 GLY CYS ASN ILE PHE ASP HIS PHE SER ARG LYS ASP TYR SEQRES 17 A 373 GLN ARG MET LEU ASP LEU MET ARG ASP ILE ILE LEU ALA SEQRES 18 A 373 THR ASP LEU ALA HIS HIS LEU ARG ILE PHE LYS ASP LEU SEQRES 19 A 373 GLN LYS MET ALA GLU VAL GLY TYR ASP ARG ASN ASN LYS SEQRES 20 A 373 GLN HIS HIS ARG LEU LEU LEU CYS LEU LEU MET THR SER SEQRES 21 A 373 CYS ASP LEU SER ASP GLN THR LYS GLY TRP LYS THR THR SEQRES 22 A 373 ARG LYS ILE ALA GLU LEU ILE TYR LYS GLU PHE PHE SER SEQRES 23 A 373 GLN GLY ASP LEU GLU LYS ALA MET GLY ASN ARG PRO MET SEQRES 24 A 373 GLU MET MET ASP ARG GLU LYS ALA TYR ILE PRO GLU LEU SEQRES 25 A 373 GLN ILE SER PHE MET GLU HIS ILE ALA MET PRO ILE TYR SEQRES 26 A 373 LYS LEU LEU GLN ASP LEU PHE PRO LYS ALA ALA GLU LEU SEQRES 27 A 373 TYR GLU ARG VAL ALA SER ASN ARG GLU HIS TRP THR LYS SEQRES 28 A 373 VAL SER HIS LYS PHE THR ILE ARG GLY LEU PRO SER ASN SEQRES 29 A 373 ASN SER LEU ASP PHE LEU ASP GLU GLU SEQRES 1 B 373 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 B 373 GLY GLU LEU SER THR SER LEU TYR LYS LYS ALA GLY PHE SEQRES 3 B 373 ASP ASP ASP ASP LYS SER ASP ASP GLU TYR THR LYS LEU SEQRES 4 B 373 LEU HIS ASP GLY ILE GLN PRO VAL ALA ALA ILE ASP SER SEQRES 5 B 373 ASN PHE ALA SER PHE THR TYR THR PRO ARG SER LEU PRO SEQRES 6 B 373 GLU ASP ASP THR SER MET ALA ILE LEU SER MET LEU GLN SEQRES 7 B 373 ASP MET ASN PHE ILE ASN ASN TYR LYS ILE ASP CYS PRO SEQRES 8 B 373 THR LEU ALA ARG PHE CYS LEU MET VAL LYS LYS GLY TYR SEQRES 9 B 373 ARG ASP PRO PRO TYR HIS ASN TRP MET HIS ALA PHE SER SEQRES 10 B 373 VAL SER HIS PHE CYS TYR LEU LEU TYR LYS ASN LEU GLU SEQRES 11 B 373 LEU THR ASN TYR LEU GLU ASP ILE GLU ILE PHE ALA LEU SEQRES 12 B 373 PHE ILE SER CYS MET CYS HIS ASP LEU ASP HIS ARG GLY SEQRES 13 B 373 THR ASN ASN SER PHE GLN VAL ALA SER LYS SER VAL LEU SEQRES 14 B 373 ALA ALA LEU TYR SER SER GLU GLY SER VAL MET GLU ARG SEQRES 15 B 373 HIS HIS PHE ALA GLN ALA ILE ALA ILE LEU ASN THR HIS SEQRES 16 B 373 GLY CYS ASN ILE PHE ASP HIS PHE SER ARG LYS ASP TYR SEQRES 17 B 373 GLN ARG MET LEU ASP LEU MET ARG ASP ILE ILE LEU ALA SEQRES 18 B 373 THR ASP LEU ALA HIS HIS LEU ARG ILE PHE LYS ASP LEU SEQRES 19 B 373 GLN LYS MET ALA GLU VAL GLY TYR ASP ARG ASN ASN LYS SEQRES 20 B 373 GLN HIS HIS ARG LEU LEU LEU CYS LEU LEU MET THR SER SEQRES 21 B 373 CYS ASP LEU SER ASP GLN THR LYS GLY TRP LYS THR THR SEQRES 22 B 373 ARG LYS ILE ALA GLU LEU ILE TYR LYS GLU PHE PHE SER SEQRES 23 B 373 GLN GLY ASP LEU GLU LYS ALA MET GLY ASN ARG PRO MET SEQRES 24 B 373 GLU MET MET ASP ARG GLU LYS ALA TYR ILE PRO GLU LEU SEQRES 25 B 373 GLN ILE SER PHE MET GLU HIS ILE ALA MET PRO ILE TYR SEQRES 26 B 373 LYS LEU LEU GLN ASP LEU PHE PRO LYS ALA ALA GLU LEU SEQRES 27 B 373 TYR GLU ARG VAL ALA SER ASN ARG GLU HIS TRP THR LYS SEQRES 28 B 373 VAL SER HIS LYS PHE THR ILE ARG GLY LEU PRO SER ASN SEQRES 29 B 373 ASN SER LEU ASP PHE LEU ASP GLU GLU HET ZN A1001 1 HET MG A1002 1 HET D07 A1003 13 HET ZN B1001 1 HET MG B1002 1 HET D07 B1003 13 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM D07 6-CHLORO-N,1-DIMETHYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4- HETNAM 2 D07 AMINE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 D07 2(C7 H8 CL N5) FORMUL 9 HOH *231(H2 O) HELIX 1 AA1 TYR A 582 LEU A 586 5 5 HELIX 2 AA2 PRO A 592 ASP A 597 1 6 HELIX 3 AA3 THR A 606 LEU A 610 5 5 HELIX 4 AA4 PRO A 611 ASP A 613 5 3 HELIX 5 AA5 ASP A 614 MET A 626 1 13 HELIX 6 AA6 ASN A 627 TYR A 632 1 6 HELIX 7 AA7 ASP A 635 GLY A 649 1 15 HELIX 8 AA8 ASN A 657 LEU A 675 1 19 HELIX 9 AA9 GLU A 676 TYR A 680 5 5 HELIX 10 AB1 GLU A 682 HIS A 696 1 15 HELIX 11 AB2 ASN A 704 SER A 711 1 8 HELIX 12 AB3 SER A 713 SER A 720 1 8 HELIX 13 AB4 SER A 721 GLY A 723 5 3 HELIX 14 AB5 SER A 724 ASN A 739 1 16 HELIX 15 AB6 SER A 750 THR A 768 1 19 HELIX 16 AB7 ASP A 769 GLY A 787 1 19 HELIX 17 AB8 GLN A 794 LEU A 809 1 16 HELIX 18 AB9 SER A 810 LYS A 814 5 5 HELIX 19 AC1 GLY A 815 MET A 840 1 26 HELIX 20 AC2 MET A 845 ASP A 849 5 5 HELIX 21 AC3 TYR A 854 ILE A 866 1 13 HELIX 22 AC4 ILE A 866 PHE A 878 1 13 HELIX 23 AC5 ALA A 881 SER A 899 1 19 HELIX 24 AC6 HIS A 900 PHE A 902 5 3 HELIX 25 AC7 LEU B 562 LEU B 566 5 5 HELIX 26 AC8 TYR B 582 HIS B 587 1 6 HELIX 27 AC9 PRO B 592 ASP B 597 1 6 HELIX 28 AD1 THR B 606 LEU B 610 5 5 HELIX 29 AD2 PRO B 611 ASP B 613 5 3 HELIX 30 AD3 ASP B 614 MET B 626 1 13 HELIX 31 AD4 ASN B 627 TYR B 632 1 6 HELIX 32 AD5 ASP B 635 GLY B 649 1 15 HELIX 33 AD6 ASN B 657 GLU B 676 1 20 HELIX 34 AD7 LEU B 677 TYR B 680 5 4 HELIX 35 AD8 GLU B 682 HIS B 696 1 15 HELIX 36 AD9 ASN B 704 SER B 711 1 8 HELIX 37 AE1 SER B 713 SER B 720 1 8 HELIX 38 AE2 SER B 724 ASN B 739 1 16 HELIX 39 AE3 SER B 750 ALA B 767 1 18 HELIX 40 AE4 ASP B 769 GLY B 787 1 19 HELIX 41 AE5 ASN B 792 LEU B 809 1 18 HELIX 42 AE6 SER B 810 LYS B 814 5 5 HELIX 43 AE7 GLY B 815 MET B 840 1 26 HELIX 44 AE8 MET B 845 ASP B 849 5 5 HELIX 45 AE9 TYR B 854 ILE B 866 1 13 HELIX 46 AF1 ILE B 866 PHE B 878 1 13 HELIX 47 AF2 ALA B 881 HIS B 900 1 20 LINK NE2 HIS A 660 ZN ZN A1001 1555 1555 2.10 LINK NE2 HIS A 696 ZN ZN A1001 1555 1555 2.05 LINK OD2 ASP A 697 ZN ZN A1001 1555 1555 2.09 LINK OD1 ASP A 697 MG MG A1002 1555 1555 2.11 LINK OD1 ASP A 808 ZN ZN A1001 1555 1555 2.31 LINK ZN ZN A1001 O HOH A1121 1555 1555 2.09 LINK MG MG A1002 O HOH A1110 1555 1555 2.02 LINK MG MG A1002 O HOH A1121 1555 1555 2.20 LINK MG MG A1002 O HOH A1127 1555 1555 2.45 LINK MG MG A1002 O HOH A1160 1555 1555 2.56 LINK MG MG A1002 O HOH A1165 1555 1555 2.08 LINK NE2 HIS B 660 ZN ZN B1001 1555 1555 2.06 LINK NE2 HIS B 696 ZN ZN B1001 1555 1555 2.12 LINK OD2 ASP B 697 ZN ZN B1001 1555 1555 2.09 LINK OD1 ASP B 697 MG MG B1002 1555 1555 2.09 LINK OD1 ASP B 808 ZN ZN B1001 1555 1555 2.25 LINK ZN ZN B1001 O HOH B1143 1555 1555 2.13 LINK MG MG B1002 O HOH B1102 1555 1555 2.33 LINK MG MG B1002 O HOH B1143 1555 1555 2.22 LINK MG MG B1002 O HOH B1145 1555 1555 2.35 LINK MG MG B1002 O HOH B1151 1555 1555 1.94 LINK MG MG B1002 O HOH B1188 1555 1555 2.24 SITE 1 AC1 6 HIS A 660 HIS A 696 ASP A 697 ASP A 808 SITE 2 AC1 6 HOH A1121 HOH A1183 SITE 1 AC2 6 ASP A 697 HOH A1110 HOH A1121 HOH A1127 SITE 2 AC2 6 HOH A1160 HOH A1165 SITE 1 AC3 9 LEU A 809 GLN A 812 ILE A 826 TYR A 827 SITE 2 AC3 9 PHE A 862 HOH A1119 HOH A1152 HOH A1155 SITE 3 AC3 9 HOH A1178 SITE 1 AC4 5 HIS B 660 HIS B 696 ASP B 697 ASP B 808 SITE 2 AC4 5 HOH B1143 SITE 1 AC5 6 ASP B 697 HOH B1102 HOH B1143 HOH B1145 SITE 2 AC5 6 HOH B1151 HOH B1188 SITE 1 AC6 6 LEU B 809 GLN B 812 ILE B 826 GLN B 859 SITE 2 AC6 6 PHE B 862 HOH B1127 CRYST1 72.034 94.186 102.526 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013882 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009754 0.00000