HEADER HYDROLASE 11-OCT-17 6B9V TITLE CRYSTAL STRUCTURE OF A NEW DIPHOSPHATASE FROM THE PHNP FAMILY COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KORIBACTER VERSATILIS (STRAIN ELLIN345); SOURCE 3 ORGANISM_TAXID: 204669; SOURCE 4 STRAIN: ELLIN345; SOURCE 5 GENE: ACID345_2630; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12 KEYWDS METALLO-BETA-LACTAMASE-LIKE HYDROLASE, DIPHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.LI,S.D.BRUNER REVDAT 3 04-OCT-23 6B9V 1 LINK REVDAT 2 08-MAY-19 6B9V 1 JRNL REVDAT 1 17-OCT-18 6B9V 0 JRNL AUTH G.A.W.BEAUDOIN,Q.LI,S.D.BRUNER,A.D.HANSON JRNL TITL AN UNUSUAL DIPHOSPHATASE FROM THE PHNP FAMILY CLEAVES JRNL TITL 2 REACTIVE FAD PHOTOPRODUCTS. JRNL REF BIOCHEM.J. V. 475 261 2018 JRNL REFN ESSN 1470-8728 JRNL PMID 29229761 JRNL DOI 10.1042/BCJ20170817 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 40289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 2062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.2864 - 4.6373 1.00 2649 157 0.1598 0.1891 REMARK 3 2 4.6373 - 3.6816 1.00 2606 123 0.1398 0.1601 REMARK 3 3 3.6816 - 3.2165 1.00 2629 110 0.1528 0.2059 REMARK 3 4 3.2165 - 2.9225 1.00 2540 155 0.1560 0.1789 REMARK 3 5 2.9225 - 2.7131 1.00 2585 133 0.1618 0.2054 REMARK 3 6 2.7131 - 2.5532 1.00 2528 139 0.1647 0.2087 REMARK 3 7 2.5532 - 2.4253 1.00 2520 142 0.1643 0.2162 REMARK 3 8 2.4253 - 2.3198 1.00 2559 141 0.1566 0.2028 REMARK 3 9 2.3198 - 2.2305 1.00 2547 152 0.1659 0.2105 REMARK 3 10 2.2305 - 2.1535 1.00 2499 158 0.1572 0.1705 REMARK 3 11 2.1535 - 2.0862 1.00 2551 125 0.1510 0.2017 REMARK 3 12 2.0862 - 2.0265 1.00 2576 133 0.1549 0.2193 REMARK 3 13 2.0265 - 1.9732 1.00 2508 125 0.1745 0.2279 REMARK 3 14 1.9732 - 1.9251 1.00 2548 135 0.1955 0.2354 REMARK 3 15 1.9251 - 1.8813 0.95 2382 134 0.2306 0.2448 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4136 REMARK 3 ANGLE : 1.150 5602 REMARK 3 CHIRALITY : 0.048 632 REMARK 3 PLANARITY : 0.005 718 REMARK 3 DIHEDRAL : 13.400 1526 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 29.6115 32.7412 24.5511 REMARK 3 T TENSOR REMARK 3 T11: 0.1364 T22: 0.1079 REMARK 3 T33: 0.1518 T12: -0.0206 REMARK 3 T13: 0.0252 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.0594 L22: 0.6285 REMARK 3 L33: 1.7078 L12: 0.1202 REMARK 3 L13: 0.2602 L23: 0.1867 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: 0.0703 S13: -0.0905 REMARK 3 S21: -0.0412 S22: -0.0081 S23: 0.0219 REMARK 3 S31: 0.0882 S32: -0.2022 S33: 0.0061 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6B9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230514. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40298 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 39.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.06810 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.57870 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3PY6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM CHES PH 9.5, 30% PEG-3000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.89000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.68200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.89000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.68200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 125 REMARK 465 ASP A 126 REMARK 465 ASP A 127 REMARK 465 TYR A 128 REMARK 465 LYS A 129 REMARK 465 PHE A 130 REMARK 465 GLY A 131 REMARK 465 SER A 132 REMARK 465 ILE A 133 REMARK 465 ALA A 134 REMARK 465 GLU A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 MET B 3 REMARK 465 PHE B 124 REMARK 465 ASP B 125 REMARK 465 ASP B 126 REMARK 465 ASP B 127 REMARK 465 TYR B 128 REMARK 465 LYS B 129 REMARK 465 PHE B 130 REMARK 465 GLY B 131 REMARK 465 SER B 132 REMARK 465 HIS B 266 REMARK 465 HIS B 267 REMARK 465 HIS B 268 REMARK 465 HIS B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE MET A 16 O HOH B 455 1.57 REMARK 500 O HOH B 437 O HOH B 526 2.10 REMARK 500 O HOH A 432 O HOH A 568 2.12 REMARK 500 NH2 ARG B 37 O ALA B 252 2.16 REMARK 500 O HOH B 500 O HOH B 532 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 16 CG - SD - CE ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 41 146.78 -170.52 REMARK 500 ASP A 54 148.16 76.66 REMARK 500 HIS A 78 -177.93 -171.37 REMARK 500 PHE A 120 41.27 -109.25 REMARK 500 HIS A 142 -146.78 -115.17 REMARK 500 ARG A 202 -177.97 -170.37 REMARK 500 ASP B 54 148.59 73.06 REMARK 500 HIS B 78 -175.76 -173.09 REMARK 500 ALA B 102 -134.51 154.89 REMARK 500 ARG B 202 -168.54 -174.05 REMARK 500 PRO B 246 175.56 -56.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 100 GLY B 101 33.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 23 SG REMARK 620 2 CYS A 25 SG 108.0 REMARK 620 3 CYS A 28 SG 115.1 110.6 REMARK 620 4 HIS A 234 ND1 109.8 107.4 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 NE2 REMARK 620 2 HIS A 80 ND1 97.4 REMARK 620 3 HIS A 160 NE2 106.0 95.4 REMARK 620 4 ASP A 178 OD1 88.4 169.2 91.7 REMARK 620 5 PO4 A 303 O1 113.5 98.0 136.0 71.3 REMARK 620 6 PO4 A 303 O3 172.7 89.4 75.7 84.5 62.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 82 OD2 REMARK 620 2 HIS A 83 NE2 86.0 REMARK 620 3 ASP A 178 OD1 164.1 93.8 REMARK 620 4 HIS A 231 NE2 99.1 124.1 94.2 REMARK 620 5 PO4 A 303 O1 88.8 105.7 76.0 129.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 23 SG REMARK 620 2 CYS B 25 SG 110.6 REMARK 620 3 CYS B 28 SG 116.3 110.6 REMARK 620 4 HIS B 234 ND1 105.2 107.9 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 78 NE2 REMARK 620 2 HIS B 80 ND1 93.9 REMARK 620 3 HIS B 160 NE2 107.5 97.0 REMARK 620 4 ASP B 178 OD1 88.9 168.8 92.5 REMARK 620 5 PO4 B 303 O1 171.3 91.8 78.3 84.4 REMARK 620 6 PO4 B 303 O4 112.0 92.1 138.7 76.9 61.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 82 OD1 REMARK 620 2 HIS B 83 NE2 85.6 REMARK 620 3 ASP B 178 OD1 160.8 90.5 REMARK 620 4 HIS B 231 NE2 97.3 125.5 100.2 REMARK 620 5 PO4 B 303 O2 87.6 157.1 88.7 77.0 REMARK 620 6 PO4 B 303 O4 87.9 99.0 74.1 135.4 58.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 304 DBREF 6B9V A 3 262 UNP Q1INB9 Q1INB9_KORVE 1 260 DBREF 6B9V B 3 262 UNP Q1INB9 Q1INB9_KORVE 1 260 SEQADV 6B9V MET A 1 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V LEU A 2 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V CYS A 263 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V LEU A 264 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V GLU A 265 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V HIS A 266 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V HIS A 267 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V HIS A 268 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V HIS A 269 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V HIS A 270 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V HIS A 271 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V MET B 1 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V LEU B 2 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V CYS B 263 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V LEU B 264 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V GLU B 265 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V HIS B 266 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V HIS B 267 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V HIS B 268 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V HIS B 269 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V HIS B 270 UNP Q1INB9 EXPRESSION TAG SEQADV 6B9V HIS B 271 UNP Q1INB9 EXPRESSION TAG SEQRES 1 A 271 MET LEU MET ARG ALA THR LEU THR VAL LEU GLY SER GLY SEQRES 2 A 271 THR SER MET GLY VAL PRO THR ILE GLY CYS ASP CYS ALA SEQRES 3 A 271 VAL CYS SER SER SER ASP PRO HIS ASP ARG ARG LEU ARG SEQRES 4 A 271 PRO SER VAL MET VAL GLN TYR ASP GLY LYS LEU VAL LEU SEQRES 5 A 271 ILE ASP THR THR PRO ASP PHE ARG GLU GLN ALA LEU ARG SEQRES 6 A 271 GLU GLY ILE LYS LYS ILE ASP ALA ILE VAL TYR THR HIS SEQRES 7 A 271 GLY HIS ALA ASP HIS ILE LEU GLY LEU ASP ASP VAL ARG SEQRES 8 A 271 PRO LEU SER PHE PRO ARG ILE THR GLY GLY ALA ARG VAL SEQRES 9 A 271 PRO LEU TYR ALA ASN GLU LYS THR GLU ARG VAL LEU LYS SEQRES 10 A 271 HIS VAL PHE LYS TYR ILE PHE ASP ASP ASP TYR LYS PHE SEQRES 11 A 271 GLY SER ILE ALA GLN VAL GLU MET HIS ARG VAL HIS HIS SEQRES 12 A 271 GLU ALA ILE GLU LEU PHE GLY ALA LYS PHE ILE PRO VAL SEQRES 13 A 271 PRO VAL ILE HIS GLY GLU THR GLU ILE TYR GLY TYR ARG SEQRES 14 A 271 PHE GLY SER ALA ALA TYR LEU THR ASP PHE SER SER ILE SEQRES 15 A 271 PRO ASP ALA SER MET GLU MET LEU ARG GLY LEU ASP ILE SEQRES 16 A 271 LEU PHE LEU ASP ALA LEU ARG HIS LYS PRO HIS PRO THR SEQRES 17 A 271 HIS SER THR LEU ASP ASN SER VAL SER ILE ALA GLU LYS SEQRES 18 A 271 LEU LYS ALA LYS HIS THR TYR PHE THR HIS ILE SER HIS SEQRES 19 A 271 ASP LEU PRO HIS GLU GLU THR ASN ARG GLN LEU PRO ALA SEQRES 20 A 271 GLY ILE GLN LEU ALA HIS ASP GLY LEU LYS LEU GLU PHE SEQRES 21 A 271 GLU LEU CYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 271 MET LEU MET ARG ALA THR LEU THR VAL LEU GLY SER GLY SEQRES 2 B 271 THR SER MET GLY VAL PRO THR ILE GLY CYS ASP CYS ALA SEQRES 3 B 271 VAL CYS SER SER SER ASP PRO HIS ASP ARG ARG LEU ARG SEQRES 4 B 271 PRO SER VAL MET VAL GLN TYR ASP GLY LYS LEU VAL LEU SEQRES 5 B 271 ILE ASP THR THR PRO ASP PHE ARG GLU GLN ALA LEU ARG SEQRES 6 B 271 GLU GLY ILE LYS LYS ILE ASP ALA ILE VAL TYR THR HIS SEQRES 7 B 271 GLY HIS ALA ASP HIS ILE LEU GLY LEU ASP ASP VAL ARG SEQRES 8 B 271 PRO LEU SER PHE PRO ARG ILE THR GLY GLY ALA ARG VAL SEQRES 9 B 271 PRO LEU TYR ALA ASN GLU LYS THR GLU ARG VAL LEU LYS SEQRES 10 B 271 HIS VAL PHE LYS TYR ILE PHE ASP ASP ASP TYR LYS PHE SEQRES 11 B 271 GLY SER ILE ALA GLN VAL GLU MET HIS ARG VAL HIS HIS SEQRES 12 B 271 GLU ALA ILE GLU LEU PHE GLY ALA LYS PHE ILE PRO VAL SEQRES 13 B 271 PRO VAL ILE HIS GLY GLU THR GLU ILE TYR GLY TYR ARG SEQRES 14 B 271 PHE GLY SER ALA ALA TYR LEU THR ASP PHE SER SER ILE SEQRES 15 B 271 PRO ASP ALA SER MET GLU MET LEU ARG GLY LEU ASP ILE SEQRES 16 B 271 LEU PHE LEU ASP ALA LEU ARG HIS LYS PRO HIS PRO THR SEQRES 17 B 271 HIS SER THR LEU ASP ASN SER VAL SER ILE ALA GLU LYS SEQRES 18 B 271 LEU LYS ALA LYS HIS THR TYR PHE THR HIS ILE SER HIS SEQRES 19 B 271 ASP LEU PRO HIS GLU GLU THR ASN ARG GLN LEU PRO ALA SEQRES 20 B 271 GLY ILE GLN LEU ALA HIS ASP GLY LEU LYS LEU GLU PHE SEQRES 21 B 271 GLU LEU CYS LEU GLU HIS HIS HIS HIS HIS HIS HET MN A 301 1 HET MN A 302 1 HET PO4 A 303 5 HET ZN A 304 1 HET MN B 301 1 HET MN B 302 1 HET PO4 B 303 5 HET ZN B 304 1 HETNAM MN MANGANESE (II) ION HETNAM PO4 PHOSPHATE ION HETNAM ZN ZINC ION FORMUL 3 MN 4(MN 2+) FORMUL 5 PO4 2(O4 P 3-) FORMUL 6 ZN 2(ZN 2+) FORMUL 11 HOH *364(H2 O) HELIX 1 AA1 ASP A 32 ARG A 36 5 5 HELIX 2 AA2 ASP A 58 GLY A 67 1 10 HELIX 3 AA3 HIS A 80 LEU A 85 1 6 HELIX 4 AA4 GLY A 86 ARG A 91 1 6 HELIX 5 AA5 PRO A 92 SER A 94 5 3 HELIX 6 AA6 PHE A 95 GLY A 100 1 6 HELIX 7 AA7 ASN A 109 PHE A 120 1 12 HELIX 8 AA8 PRO A 183 GLU A 188 1 6 HELIX 9 AA9 THR A 211 LYS A 223 1 13 HELIX 10 AB1 PRO A 237 LEU A 245 1 9 HELIX 11 AB2 ALA B 26 SER B 30 5 5 HELIX 12 AB3 ASP B 32 ARG B 36 5 5 HELIX 13 AB4 ASP B 58 GLY B 67 1 10 HELIX 14 AB5 HIS B 80 LEU B 85 1 6 HELIX 15 AB6 GLY B 86 ARG B 91 1 6 HELIX 16 AB7 PRO B 92 SER B 94 5 3 HELIX 17 AB8 PHE B 95 GLY B 100 1 6 HELIX 18 AB9 ASN B 109 LYS B 121 1 13 HELIX 19 AC1 PRO B 183 GLU B 188 1 6 HELIX 20 AC2 THR B 211 LYS B 223 1 13 HELIX 21 AC3 PRO B 237 ARG B 243 1 7 SHEET 1 AA1 7 VAL A 136 ARG A 140 0 SHEET 2 AA1 7 VAL A 104 ALA A 108 1 N LEU A 106 O GLU A 137 SHEET 3 AA1 7 ALA A 73 VAL A 75 1 N ILE A 74 O TYR A 107 SHEET 4 AA1 7 LYS A 49 ILE A 53 1 N LEU A 52 O VAL A 75 SHEET 5 AA1 7 SER A 41 TYR A 46 -1 N VAL A 44 O VAL A 51 SHEET 6 AA1 7 LEU A 2 GLY A 11 -1 N THR A 6 O GLN A 45 SHEET 7 AA1 7 LYS A 257 CYS A 263 -1 O LEU A 258 N LEU A 7 SHEET 1 AA2 7 ILE A 146 LEU A 148 0 SHEET 2 AA2 7 ALA A 151 HIS A 160 -1 O PHE A 153 N ILE A 146 SHEET 3 AA2 7 THR A 163 PHE A 170 -1 O THR A 163 N HIS A 160 SHEET 4 AA2 7 ALA A 173 LEU A 176 -1 O ALA A 173 N PHE A 170 SHEET 5 AA2 7 ILE A 195 ASP A 199 1 O PHE A 197 N ALA A 174 SHEET 6 AA2 7 HIS A 226 THR A 230 1 O TYR A 228 N LEU A 196 SHEET 7 AA2 7 ILE A 249 LEU A 251 1 O GLN A 250 N THR A 227 SHEET 1 AA3 7 VAL B 136 ARG B 140 0 SHEET 2 AA3 7 VAL B 104 ALA B 108 1 N LEU B 106 O HIS B 139 SHEET 3 AA3 7 ALA B 73 VAL B 75 1 N ILE B 74 O TYR B 107 SHEET 4 AA3 7 LYS B 49 ILE B 53 1 N LEU B 52 O VAL B 75 SHEET 5 AA3 7 SER B 41 TYR B 46 -1 N VAL B 44 O VAL B 51 SHEET 6 AA3 7 ALA B 5 GLY B 11 -1 N THR B 6 O GLN B 45 SHEET 7 AA3 7 LYS B 257 PHE B 260 -1 O LEU B 258 N LEU B 7 SHEET 1 AA4 7 ILE B 146 LEU B 148 0 SHEET 2 AA4 7 ALA B 151 HIS B 160 -1 O ALA B 151 N LEU B 148 SHEET 3 AA4 7 THR B 163 PHE B 170 -1 O THR B 163 N HIS B 160 SHEET 4 AA4 7 ALA B 173 LEU B 176 -1 O ALA B 173 N PHE B 170 SHEET 5 AA4 7 ILE B 195 ASP B 199 1 O PHE B 197 N ALA B 174 SHEET 6 AA4 7 HIS B 226 THR B 230 1 O TYR B 228 N LEU B 196 SHEET 7 AA4 7 ILE B 249 LEU B 251 1 O GLN B 250 N THR B 227 LINK SG CYS A 23 ZN ZN A 304 1555 1555 2.32 LINK SG CYS A 25 ZN ZN A 304 1555 1555 2.34 LINK SG CYS A 28 ZN ZN A 304 1555 1555 2.31 LINK NE2 HIS A 78 MN MN A 302 1555 1555 2.25 LINK ND1 HIS A 80 MN MN A 302 1555 1555 2.05 LINK OD2 ASP A 82 MN MN A 301 1555 1555 2.22 LINK NE2 HIS A 83 MN MN A 301 1555 1555 2.18 LINK NE2 HIS A 160 MN MN A 302 1555 1555 2.24 LINK OD1 ASP A 178 MN MN A 301 1555 1555 2.20 LINK OD1 ASP A 178 MN MN A 302 1555 1555 2.41 LINK NE2 HIS A 231 MN MN A 301 1555 1555 2.17 LINK ND1 HIS A 234 ZN ZN A 304 1555 1555 2.05 LINK MN MN A 301 O1 PO4 A 303 1555 1555 2.15 LINK MN MN A 302 O1 PO4 A 303 1555 1555 2.18 LINK MN MN A 302 O3 PO4 A 303 1555 1555 2.57 LINK SG CYS B 23 ZN ZN B 304 1555 1555 2.30 LINK SG CYS B 25 ZN ZN B 304 1555 1555 2.35 LINK SG CYS B 28 ZN ZN B 304 1555 1555 2.29 LINK NE2 HIS B 78 MN MN B 301 1555 1555 2.22 LINK ND1 HIS B 80 MN MN B 301 1555 1555 2.08 LINK OD1 ASP B 82 MN MN B 302 1555 1555 2.26 LINK NE2 HIS B 83 MN MN B 302 1555 1555 2.19 LINK NE2 HIS B 160 MN MN B 301 1555 1555 2.24 LINK OD1 ASP B 178 MN MN B 301 1555 1555 2.45 LINK OD1 ASP B 178 MN MN B 302 1555 1555 2.20 LINK NE2 HIS B 231 MN MN B 302 1555 1555 2.17 LINK ND1 HIS B 234 ZN ZN B 304 1555 1555 2.29 LINK MN MN B 301 O1 PO4 B 303 1555 1555 2.62 LINK MN MN B 301 O4 PO4 B 303 1555 1555 2.10 LINK MN MN B 302 O2 PO4 B 303 1555 1555 2.52 LINK MN MN B 302 O4 PO4 B 303 1555 1555 2.51 CISPEP 1 VAL A 18 PRO A 19 0 3.28 CISPEP 2 VAL B 18 PRO B 19 0 2.19 CISPEP 3 GLY B 101 ALA B 102 0 5.69 SITE 1 AC1 6 ASP A 82 HIS A 83 ASP A 178 HIS A 231 SITE 2 AC1 6 MN A 302 PO4 A 303 SITE 1 AC2 6 HIS A 78 HIS A 80 HIS A 160 ASP A 178 SITE 2 AC2 6 MN A 301 PO4 A 303 SITE 1 AC3 12 HIS A 78 HIS A 80 ASP A 82 HIS A 83 SITE 2 AC3 12 HIS A 160 ASP A 178 HIS A 209 HIS A 231 SITE 3 AC3 12 MN A 301 MN A 302 HOH A 404 HOH A 405 SITE 1 AC4 4 CYS A 23 CYS A 25 CYS A 28 HIS A 234 SITE 1 AC5 6 HIS B 78 HIS B 80 HIS B 160 ASP B 178 SITE 2 AC5 6 MN B 302 PO4 B 303 SITE 1 AC6 6 ASP B 82 HIS B 83 ASP B 178 HIS B 231 SITE 2 AC6 6 MN B 301 PO4 B 303 SITE 1 AC7 13 SER B 15 HIS B 78 HIS B 80 ASP B 82 SITE 2 AC7 13 HIS B 83 HIS B 160 ASP B 178 HIS B 209 SITE 3 AC7 13 HIS B 231 MN B 301 MN B 302 HOH B 437 SITE 4 AC7 13 HOH B 439 SITE 1 AC8 4 CYS B 23 CYS B 25 CYS B 28 HIS B 234 CRYST1 125.780 41.364 96.034 90.00 95.20 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007950 0.000000 0.000723 0.00000 SCALE2 0.000000 0.024176 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010456 0.00000