HEADER SURFACTANT PROTEIN 18-OCT-17 6BBD TITLE STRUCTURE OF N-GLYCOSYLATED PORCINE SURFACTANT PROTEIN-D COMPLEXED TITLE 2 WITH GLYCEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PULMONARY SURFACTANT-ASSOCIATED PROTEIN D; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SP-D,LUNG SURFACTANT PROTEIN D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: SFTPD; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293E; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PUPE105.03 KEYWDS INNATE IMMUNITY, SURFACTANT, N-LINKED GLYCAN, C-TYPE LECTIN, KEYWDS 2 SURFACTANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.VAN EIJK,M.J.RYNKIEWICZ,K.KHATRI,N.LEYMARIE,J.ZAIA,M.R.WHITE, AUTHOR 2 K.L.HARTSHORN,T.R.CAFARELLA,I.VAN DIE,M.HESSING,B.A.SEATON, AUTHOR 3 H.P.HAAGSMAN REVDAT 5 04-OCT-23 6BBD 1 HETSYN LINK REVDAT 4 29-JUL-20 6BBD 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 18-JUL-18 6BBD 1 JRNL REVDAT 2 30-MAY-18 6BBD 1 JRNL REVDAT 1 23-MAY-18 6BBD 0 JRNL AUTH M.VAN EIJK,M.J.RYNKIEWICZ,K.KHATRI,N.LEYMARIE,J.ZAIA, JRNL AUTH 2 M.R.WHITE,K.L.HARTSHORN,T.R.CAFARELLA,I.VAN DIE,M.HESSING, JRNL AUTH 3 B.A.SEATON,H.P.HAAGSMAN JRNL TITL LECTIN-MEDIATED BINDING AND SIALOGLYCANS OF PORCINE JRNL TITL 2 SURFACTANT PROTEIN D SYNERGISTICALLY NEUTRALIZE INFLUENZA A JRNL TITL 3 VIRUS. JRNL REF J. BIOL. CHEM. V. 293 10646 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29769321 JRNL DOI 10.1074/JBC.RA117.001430 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 3 NUMBER OF REFLECTIONS : 11609 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.8526 - 3.7769 0.92 1388 146 0.1818 0.1964 REMARK 3 2 3.7769 - 3.0060 0.95 1408 157 0.2031 0.2856 REMARK 3 3 3.0060 - 2.6284 0.97 1434 159 0.2117 0.2400 REMARK 3 4 2.6284 - 2.3891 0.96 1383 152 0.2127 0.2602 REMARK 3 5 2.3891 - 2.2185 0.94 1385 156 0.1952 0.2458 REMARK 3 6 2.2185 - 2.0881 0.92 1346 149 0.2179 0.2919 REMARK 3 7 2.0881 - 1.9838 0.85 1237 143 0.2512 0.3106 REMARK 3 8 1.9838 - 1.8976 0.59 869 97 0.2897 0.3413 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 58.22 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.25460 REMARK 3 B22 (A**2) : 8.25460 REMARK 3 B33 (A**2) : -16.50920 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1335 REMARK 3 ANGLE : 1.085 1845 REMARK 3 CHIRALITY : 0.069 199 REMARK 3 PLANARITY : 0.006 233 REMARK 3 DIHEDRAL : 25.093 514 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 205:235) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6897 43.3173 12.5904 REMARK 3 T TENSOR REMARK 3 T11: 0.4254 T22: 0.4237 REMARK 3 T33: 0.3470 T12: -0.0284 REMARK 3 T13: -0.0039 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.8344 L22: 0.7963 REMARK 3 L33: 0.1739 L12: -0.8111 REMARK 3 L13: -0.3807 L23: 0.3730 REMARK 3 S TENSOR REMARK 3 S11: 0.1119 S12: 0.3430 S13: 0.0051 REMARK 3 S21: -0.1628 S22: -0.0775 S23: -0.0168 REMARK 3 S31: 0.1645 S32: 0.3997 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 236:358) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9411 40.2830 38.0135 REMARK 3 T TENSOR REMARK 3 T11: 0.2646 T22: 0.3184 REMARK 3 T33: 0.2937 T12: 0.0022 REMARK 3 T13: -0.0242 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 3.0720 L22: 1.3279 REMARK 3 L33: 1.6134 L12: -0.6266 REMARK 3 L13: 0.5858 L23: -0.7724 REMARK 3 S TENSOR REMARK 3 S11: -0.1341 S12: -0.1454 S13: 0.0803 REMARK 3 S21: 0.0519 S22: -0.0519 S23: -0.1233 REMARK 3 S31: 0.0338 S32: 0.1628 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BBD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230553. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12304 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.35600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4DN8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZED IN HANGING DROPS BY REMARK 280 MIXING 5 UL PROTEIN WITH 5 UL RESERVOIR SOLUTION (0.1 M 2-[BIS(2- REMARK 280 HYDROXYETHYL)-AMINO]-2-(HYDROXYMETHYL)PROPANE-1,3-DIOL, PH 6.5, REMARK 280 0.2 M MGCL2, 15% GLYCEROL, AND 22%-20% PEG 3350), VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.48700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.48700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.48700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 33.39900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 57.84876 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -33.39900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 57.84876 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 316 53.53 -141.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 297 OD1 REMARK 620 2 ASP A 297 OD2 51.5 REMARK 620 3 GLU A 301 OE1 126.2 77.4 REMARK 620 4 GLU A 301 OE2 96.0 79.4 54.3 REMARK 620 5 ASN A 324 OD1 156.3 151.7 74.7 88.2 REMARK 620 6 GLU A 332 O 95.1 127.7 133.7 150.9 71.5 REMARK 620 7 ASN A 333 OD1 72.7 116.6 128.8 78.9 85.3 78.8 REMARK 620 8 HOH A 522 O 109.4 82.1 74.1 127.7 85.6 72.6 151.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 321 OE1 REMARK 620 2 ASN A 323 OD1 74.3 REMARK 620 3 GLU A 332 OE1 149.7 78.3 REMARK 620 4 ASN A 344 OD1 67.8 140.3 141.2 REMARK 620 5 ASP A 345 O 131.8 136.0 64.5 80.7 REMARK 620 6 ASP A 345 OD1 72.5 87.5 93.8 91.9 73.1 REMARK 620 7 GOL A 403 O2 133.5 118.6 71.9 81.9 72.2 145.3 REMARK 620 8 GOL A 403 O3 70.2 77.2 116.0 79.4 139.4 142.3 70.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DN8 RELATED DB: PDB REMARK 900 USED FOR STRUCTURE SOLUTION DBREF 6BBD A 205 358 UNP Q9N1X4 SFTPD_PIG 225 378 SEQRES 1 A 154 THR ALA LEU ARG GLN GLN VAL GLU THR LEU GLN GLY GLN SEQRES 2 A 154 VAL GLN ARG LEU GLN LYS ALA PHE SER GLN TYR LYS LYS SEQRES 3 A 154 VAL GLU LEU PHE PRO ASN GLY ARG GLY VAL GLY GLU LYS SEQRES 4 A 154 ILE PHE LYS THR GLY GLY PHE GLU LYS THR PHE GLN ASP SEQRES 5 A 154 ALA GLN GLN VAL CYS THR GLN ALA GLY GLY GLN MET ALA SEQRES 6 A 154 SER PRO ARG SER GLU THR GLU ASN GLU ALA LEU SER GLN SEQRES 7 A 154 LEU VAL THR ALA GLN ASN LYS ALA ALA PHE LEU SER MET SEQRES 8 A 154 THR ASP ILE LYS THR GLU GLY ASN PHE THR TYR PRO THR SEQRES 9 A 154 GLY GLU PRO LEU VAL TYR ALA ASN TRP ALA PRO GLY GLU SEQRES 10 A 154 PRO ASN ASN ASN GLY GLY SER SER GLY ALA GLU ASN CYS SEQRES 11 A 154 VAL GLU ILE PHE PRO ASN GLY LYS TRP ASN ASP LYS ALA SEQRES 12 A 154 CYS GLY GLU LEU ARG LEU VAL ILE CYS GLU PHE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET NAG B 5 14 HET CA A 401 1 HET CA A 402 1 HET GOL A 403 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN C6 H12 O6 FORMUL 3 CA 2(CA 2+) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *69(H2 O) HELIX 1 AA1 THR A 205 PHE A 234 1 30 HELIX 2 AA2 THR A 253 ALA A 264 1 12 HELIX 3 AA3 SER A 273 ASN A 288 1 16 HELIX 4 AA4 GLY A 326 GLY A 330 5 5 SHEET 1 AA1 4 GLY A 237 VAL A 240 0 SHEET 2 AA1 4 LYS A 243 LYS A 252 -1 O PHE A 245 N ARG A 238 SHEET 3 AA1 4 ARG A 352 PHE A 358 -1 O PHE A 358 N ILE A 244 SHEET 4 AA1 4 GLN A 267 MET A 268 -1 N GLN A 267 O GLU A 357 SHEET 1 AA2 3 ALA A 291 PHE A 292 0 SHEET 2 AA2 3 CYS A 334 ILE A 337 -1 O ILE A 337 N ALA A 291 SHEET 3 AA2 3 TRP A 343 LYS A 346 -1 O ASN A 344 N GLU A 336 SSBOND 1 CYS A 261 CYS A 356 1555 1555 2.03 SSBOND 2 CYS A 334 CYS A 348 1555 1555 2.04 LINK ND2 ASN A 303 C1 NAG B 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.45 LINK O2 MAN B 4 C1 NAG B 5 1555 1555 1.45 LINK OD1 ASP A 297 CA CA A 402 1555 1555 2.60 LINK OD2 ASP A 297 CA CA A 402 1555 1555 2.40 LINK OE1 GLU A 301 CA CA A 402 1555 1555 2.39 LINK OE2 GLU A 301 CA CA A 402 1555 1555 2.43 LINK OE1 GLU A 321 CA CA A 401 1555 1555 2.47 LINK OD1 ASN A 323 CA CA A 401 1555 1555 2.39 LINK OD1 ASN A 324 CA CA A 402 1555 1555 2.49 LINK OE1 GLU A 332 CA CA A 401 1555 1555 2.40 LINK O GLU A 332 CA CA A 402 1555 1555 2.43 LINK OD1 ASN A 333 CA CA A 402 1555 1555 2.37 LINK OD1 ASN A 344 CA CA A 401 1555 1555 2.35 LINK O ASP A 345 CA CA A 401 1555 1555 2.52 LINK OD1 ASP A 345 CA CA A 401 1555 1555 2.29 LINK CA CA A 401 O2 GOL A 403 1555 1555 2.48 LINK CA CA A 401 O3 GOL A 403 1555 1555 2.35 LINK CA CA A 402 O HOH A 522 1555 1555 2.13 CISPEP 1 PHE A 234 PRO A 235 0 2.89 CISPEP 2 GLU A 321 PRO A 322 0 -3.89 CRYST1 66.798 66.798 64.974 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014971 0.008643 0.000000 0.00000 SCALE2 0.000000 0.017286 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015391 0.00000