HEADER STRUCTURAL PROTEIN 19-OCT-17 6BBW TITLE STRUCTURE OF THE MAJOR PILIN PROTEIN (T3.2) FROM STREPTOCOCCUS TITLE 2 PYOGENES SEROTYPE GAS13637 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PILIN BACKBONE PROTEIN T-ANTIGEN, T3.2.; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THIS PROTEIN CONTAINS TWO INTRA-MOLECULAR ISOPEPTIDE COMPND 6 BONDS BETWEEN RESIDUES K15 AND N152, AND K163 AND N279. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 1314; SOURCE 4 GENE: TEE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: K11; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEXHTA KEYWDS TRYPSIN-RESISTANT SURFACE PROTEIN T3.2, LANCEFIELD T-ANTIGEN, KEYWDS 2 SEROTYPING, PILI, FIMBRIAE PROTEINS, STREPTOCOCCUS PYOGENES, KEYWDS 3 ISOPEPTIDE BOND., STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.G.YOUNG,E.N.BAKER,N.J.MORELAND REVDAT 4 04-OCT-23 6BBW 1 LINK REVDAT 3 01-JAN-20 6BBW 1 REMARK REVDAT 2 19-JUN-19 6BBW 1 JRNL REVDAT 1 24-OCT-18 6BBW 0 JRNL AUTH P.G.YOUNG,J.M.RAYNES,J.M.LOH,T.PROFT,E.N.BAKER,N.J.MORELAND JRNL TITL GROUP ASTREPTOCOCCUST ANTIGENS HAVE A HIGHLY CONSERVED JRNL TITL 2 STRUCTURE CONCEALED UNDER A HETEROGENEOUS SURFACE THAT HAS JRNL TITL 3 IMPLICATIONS FOR VACCINE DESIGN. JRNL REF INFECT.IMMUN. V. 87 2019 JRNL REFN ESSN 1098-5522 JRNL PMID 30936156 JRNL DOI 10.1128/IAI.00205-19 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 45137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2262 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3266 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4312 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 586 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.15000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : -1.07000 REMARK 3 B12 (A**2) : 0.68000 REMARK 3 B13 (A**2) : -1.96000 REMARK 3 B23 (A**2) : -1.11000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.831 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4431 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4144 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5982 ; 1.376 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9640 ; 0.850 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 572 ; 6.368 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;40.334 ;26.875 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 814 ;12.832 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 7.600 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 678 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5040 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 904 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2255 ; 1.320 ; 2.418 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2254 ; 1.319 ; 2.417 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2820 ; 2.094 ; 3.619 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2821 ; 2.094 ; 3.620 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2176 ; 1.632 ; 2.538 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2173 ; 1.632 ; 2.534 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3155 ; 2.634 ; 3.729 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5187 ; 5.307 ;19.614 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4900 ; 4.870 ;18.996 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6BBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230650. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE SI WITH SAGITTALY BENT REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47406 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 72.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.29600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: 6BBT REMARK 200 REMARK 200 REMARK: RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4H2PO4, 20% W/V PEG 3350, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE T3.2 MAJOR PILIN PROTEIN IS POLYMERISED END TO END INTO REMARK 300 LONG CHAINS AT THE CELL SURFACE WITH THE AID OF A PILIN SPECIFIC REMARK 300 SORTASE. THE CRYSTAL PACKING DOES NOT RESEMBLE THIS ARRANGEMENT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 THR A 2 REMARK 465 GLU B 1 REMARK 465 THR B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 ASN A 168 CG OD1 ND2 REMARK 470 GLU A 238 CG CD OE1 OE2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 GLU B 126 CG CD OE1 OE2 REMARK 470 LEU B 172 CG CD1 CD2 REMARK 470 LYS B 189 CG CD CE NZ REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 LYS B 202 CG CD CE NZ REMARK 470 LYS B 241 CG CD CE NZ REMARK 470 LYS B 245 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 15 OD1 ASN A 152 1.90 REMARK 500 NZ LYS B 15 OD1 ASN B 152 2.04 REMARK 500 NZ LYS A 163 OD1 ASN A 279 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 8 -160.66 -122.49 REMARK 500 ASP A 191 -6.10 76.89 REMARK 500 GLU A 238 34.31 -98.01 REMARK 500 GLU B 7 44.74 -98.27 REMARK 500 ASN B 8 -162.46 -160.84 REMARK 500 ASP B 191 -4.84 79.32 REMARK 500 GLU B 238 40.62 -103.73 REMARK 500 ASP B 269 -164.52 -128.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 252 OE1 REMARK 620 2 ASP A 269 OD1 96.3 REMARK 620 3 SER A 271 O 134.1 101.2 REMARK 620 4 SER A 271 OG 73.4 76.3 70.2 REMARK 620 5 ASP A 273 OD1 91.3 165.8 81.7 117.5 REMARK 620 6 HOH A 488 O 78.5 90.6 142.5 147.3 79.2 REMARK 620 7 HOH A 563 O 157.2 82.3 67.9 127.5 86.0 78.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 252 OE2 REMARK 620 2 ASP B 269 OD1 98.8 REMARK 620 3 SER B 271 O 135.1 103.5 REMARK 620 4 SER B 271 OG 74.5 75.2 74.3 REMARK 620 5 ASP B 273 OD1 85.4 164.2 83.4 120.6 REMARK 620 6 HOH B 470 O 74.6 89.8 142.7 142.9 76.5 REMARK 620 7 HOH B 508 O 149.7 81.2 72.9 133.4 87.5 75.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LYS B 15 and ASN B REMARK 800 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LYS B 163 and ASN B REMARK 800 279 DBREF1 6BBW A 1 282 UNP A0A096ZHB0_STRPY DBREF2 6BBW A A0A096ZHB0 1 282 DBREF1 6BBW B 1 282 UNP A0A096ZHB0_STRPY DBREF2 6BBW B A0A096ZHB0 1 282 SEQRES 1 A 282 GLU THR ALA GLY VAL SER GLU ASN ALA LYS LEU ILE VAL SEQRES 2 A 282 LYS LYS THR PHE ASP SER TYR THR ASP ASN GLU VAL LEU SEQRES 3 A 282 MET PRO LYS ALA ASP TYR THR PHE LYS VAL GLU ALA ASP SEQRES 4 A 282 SER THR ALA SER GLY LYS THR LYS ASP GLY LEU GLU ILE SEQRES 5 A 282 LYS PRO GLY ILE VAL ASN GLY LEU THR GLU GLN ILE ILE SEQRES 6 A 282 SER TYR THR ASN THR ASP LYS PRO ASP SER LYS VAL LYS SEQRES 7 A 282 SER THR GLU PHE ASP PHE SER LYS VAL VAL PHE PRO GLY SEQRES 8 A 282 ILE GLY VAL TYR ARG TYR ILE VAL SER GLU LYS GLN GLY SEQRES 9 A 282 ASP VAL GLU GLY ILE THR TYR ASP THR LYS LYS TRP THR SEQRES 10 A 282 VAL ASP VAL TYR VAL GLY ASN LYS GLU GLY GLY GLY PHE SEQRES 11 A 282 GLU PRO LYS PHE ILE VAL SER LYS GLU GLN GLY THR ASP SEQRES 12 A 282 VAL LYS LYS PRO VAL ASN PHE ASN ASN SER PHE ALA THR SEQRES 13 A 282 THR SER LEU LYS VAL LYS LYS ASN VAL SER GLY ASN THR SEQRES 14 A 282 GLY GLU LEU GLN LYS GLU PHE ASP PHE THR LEU THR LEU SEQRES 15 A 282 ASN GLU SER THR ASN PHE LYS LYS ASP GLN ILE VAL SER SEQRES 16 A 282 LEU GLN LYS GLY ASN GLU LYS PHE GLU VAL LYS ILE GLY SEQRES 17 A 282 THR PRO TYR LYS PHE LYS LEU LYS ASN GLY GLU SER ILE SEQRES 18 A 282 GLN LEU ASP LYS LEU PRO VAL GLY ILE THR TYR LYS VAL SEQRES 19 A 282 ASN GLU MET GLU ALA ASN LYS ASP GLY TYR LYS THR THR SEQRES 20 A 282 ALA SER LEU LYS GLU GLY ASP GLY GLN SER LYS MET TYR SEQRES 21 A 282 GLN LEU ASP MET GLU GLN LYS THR ASP GLU SER ALA ASP SEQRES 22 A 282 GLU ILE VAL VAL THR ASN LYS ARG ASP SEQRES 1 B 282 GLU THR ALA GLY VAL SER GLU ASN ALA LYS LEU ILE VAL SEQRES 2 B 282 LYS LYS THR PHE ASP SER TYR THR ASP ASN GLU VAL LEU SEQRES 3 B 282 MET PRO LYS ALA ASP TYR THR PHE LYS VAL GLU ALA ASP SEQRES 4 B 282 SER THR ALA SER GLY LYS THR LYS ASP GLY LEU GLU ILE SEQRES 5 B 282 LYS PRO GLY ILE VAL ASN GLY LEU THR GLU GLN ILE ILE SEQRES 6 B 282 SER TYR THR ASN THR ASP LYS PRO ASP SER LYS VAL LYS SEQRES 7 B 282 SER THR GLU PHE ASP PHE SER LYS VAL VAL PHE PRO GLY SEQRES 8 B 282 ILE GLY VAL TYR ARG TYR ILE VAL SER GLU LYS GLN GLY SEQRES 9 B 282 ASP VAL GLU GLY ILE THR TYR ASP THR LYS LYS TRP THR SEQRES 10 B 282 VAL ASP VAL TYR VAL GLY ASN LYS GLU GLY GLY GLY PHE SEQRES 11 B 282 GLU PRO LYS PHE ILE VAL SER LYS GLU GLN GLY THR ASP SEQRES 12 B 282 VAL LYS LYS PRO VAL ASN PHE ASN ASN SER PHE ALA THR SEQRES 13 B 282 THR SER LEU LYS VAL LYS LYS ASN VAL SER GLY ASN THR SEQRES 14 B 282 GLY GLU LEU GLN LYS GLU PHE ASP PHE THR LEU THR LEU SEQRES 15 B 282 ASN GLU SER THR ASN PHE LYS LYS ASP GLN ILE VAL SER SEQRES 16 B 282 LEU GLN LYS GLY ASN GLU LYS PHE GLU VAL LYS ILE GLY SEQRES 17 B 282 THR PRO TYR LYS PHE LYS LEU LYS ASN GLY GLU SER ILE SEQRES 18 B 282 GLN LEU ASP LYS LEU PRO VAL GLY ILE THR TYR LYS VAL SEQRES 19 B 282 ASN GLU MET GLU ALA ASN LYS ASP GLY TYR LYS THR THR SEQRES 20 B 282 ALA SER LEU LYS GLU GLY ASP GLY GLN SER LYS MET TYR SEQRES 21 B 282 GLN LEU ASP MET GLU GLN LYS THR ASP GLU SER ALA ASP SEQRES 22 B 282 GLU ILE VAL VAL THR ASN LYS ARG ASP HET CA A 301 1 HET CA B 301 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *586(H2 O) HELIX 1 AA1 LYS A 72 LYS A 76 5 5 HELIX 2 AA2 SER A 85 VAL A 87 5 3 HELIX 3 AA3 LYS B 72 LYS B 76 5 5 HELIX 4 AA4 SER B 85 VAL B 87 5 3 SHEET 1 AA1 5 VAL A 5 SER A 6 0 SHEET 2 AA1 5 PHE A 130 GLU A 139 -1 O ILE A 135 N SER A 6 SHEET 3 AA1 5 TRP A 116 ASN A 124 -1 N TYR A 121 O LYS A 133 SHEET 4 AA1 5 GLY A 93 GLU A 101 -1 N GLY A 93 O VAL A 122 SHEET 5 AA1 5 ILE A 52 PRO A 54 1 N LYS A 53 O VAL A 94 SHEET 1 AA2 6 VAL A 5 SER A 6 0 SHEET 2 AA2 6 PHE A 130 GLU A 139 -1 O ILE A 135 N SER A 6 SHEET 3 AA2 6 TRP A 116 ASN A 124 -1 N TYR A 121 O LYS A 133 SHEET 4 AA2 6 GLY A 93 GLU A 101 -1 N GLY A 93 O VAL A 122 SHEET 5 AA2 6 ALA A 30 ALA A 38 -1 N GLU A 37 O ILE A 98 SHEET 6 AA2 6 GLN A 63 TYR A 67 -1 O GLN A 63 N PHE A 34 SHEET 1 AA3 3 LYS A 78 ASP A 83 0 SHEET 2 AA3 3 LYS A 10 THR A 16 -1 N VAL A 13 O THR A 80 SHEET 3 AA3 3 VAL A 148 ASN A 151 1 O PHE A 150 N THR A 16 SHEET 1 AA4 2 ILE A 109 THR A 110 0 SHEET 2 AA4 2 SER A 153 PHE A 154 -1 O SER A 153 N THR A 110 SHEET 1 AA5 5 SER A 220 PRO A 227 0 SHEET 2 AA5 5 THR A 156 SER A 166 -1 N LEU A 159 O LEU A 223 SHEET 3 AA5 5 ASP A 273 LYS A 280 1 O ILE A 275 N LYS A 160 SHEET 4 AA5 5 LYS A 245 GLU A 252 -1 N LYS A 245 O LYS A 280 SHEET 5 AA5 5 LYS A 258 MET A 259 -1 O LYS A 258 N LEU A 250 SHEET 1 AA6 4 TYR A 211 LEU A 215 0 SHEET 2 AA6 4 PHE A 176 ASN A 183 -1 N LEU A 180 O TYR A 211 SHEET 3 AA6 4 THR A 231 GLU A 236 -1 O THR A 231 N ASN A 183 SHEET 4 AA6 4 GLN A 266 LYS A 267 -1 O GLN A 266 N TYR A 232 SHEET 1 AA7 2 ILE A 193 LYS A 198 0 SHEET 2 AA7 2 GLU A 201 LYS A 206 -1 O PHE A 203 N LEU A 196 SHEET 1 AA8 5 VAL B 5 SER B 6 0 SHEET 2 AA8 5 PHE B 130 GLU B 139 -1 O ILE B 135 N SER B 6 SHEET 3 AA8 5 TRP B 116 ASN B 124 -1 N TYR B 121 O PHE B 134 SHEET 4 AA8 5 GLY B 93 GLU B 101 -1 N GLY B 93 O VAL B 122 SHEET 5 AA8 5 ILE B 52 PRO B 54 1 N LYS B 53 O VAL B 94 SHEET 1 AA9 6 VAL B 5 SER B 6 0 SHEET 2 AA9 6 PHE B 130 GLU B 139 -1 O ILE B 135 N SER B 6 SHEET 3 AA9 6 TRP B 116 ASN B 124 -1 N TYR B 121 O PHE B 134 SHEET 4 AA9 6 GLY B 93 GLU B 101 -1 N GLY B 93 O VAL B 122 SHEET 5 AA9 6 ALA B 30 ALA B 38 -1 N GLU B 37 O ILE B 98 SHEET 6 AA9 6 GLN B 63 TYR B 67 -1 O ILE B 65 N TYR B 32 SHEET 1 AB1 3 LYS B 78 ASP B 83 0 SHEET 2 AB1 3 LYS B 10 THR B 16 -1 N VAL B 13 O THR B 80 SHEET 3 AB1 3 VAL B 148 ASN B 151 1 O PHE B 150 N LYS B 14 SHEET 1 AB2 2 ILE B 109 THR B 110 0 SHEET 2 AB2 2 SER B 153 PHE B 154 -1 O SER B 153 N THR B 110 SHEET 1 AB3 5 SER B 220 PRO B 227 0 SHEET 2 AB3 5 THR B 156 SER B 166 -1 N THR B 157 O LEU B 226 SHEET 3 AB3 5 ASP B 273 LYS B 280 1 O ASN B 279 N ASN B 164 SHEET 4 AB3 5 LYS B 245 GLU B 252 -1 N THR B 247 O THR B 278 SHEET 5 AB3 5 SER B 257 MET B 259 -1 O LYS B 258 N LEU B 250 SHEET 1 AB4 4 TYR B 211 LEU B 215 0 SHEET 2 AB4 4 PHE B 176 ASN B 183 -1 N LEU B 180 O TYR B 211 SHEET 3 AB4 4 THR B 231 GLU B 236 -1 O THR B 231 N ASN B 183 SHEET 4 AB4 4 GLN B 266 LYS B 267 -1 O GLN B 266 N TYR B 232 SHEET 1 AB5 2 ILE B 193 LYS B 198 0 SHEET 2 AB5 2 GLU B 201 LYS B 206 -1 O PHE B 203 N LEU B 196 LINK NZ LYS A 15 CG ASN A 152 1555 1555 1.26 LINK NZ LYS A 163 CG ASN A 279 1555 1555 1.27 LINK NZ LYS B 15 CG ASN B 152 1555 1555 1.27 LINK NZ LYS B 163 CG ASN B 279 1555 1555 1.27 LINK OE1 GLU A 252 CA CA A 301 1555 1555 2.31 LINK OD1 ASP A 269 CA CA A 301 1555 1555 2.30 LINK O SER A 271 CA CA A 301 1555 1555 2.47 LINK OG SER A 271 CA CA A 301 1555 1555 2.55 LINK OD1 ASP A 273 CA CA A 301 1555 1555 2.29 LINK CA CA A 301 O HOH A 488 1555 1555 2.47 LINK CA CA A 301 O HOH A 563 1555 1555 2.57 LINK OE2 GLU B 252 CA CA B 301 1555 1555 2.48 LINK OD1 ASP B 269 CA CA B 301 1555 1555 2.33 LINK O SER B 271 CA CA B 301 1555 1555 2.27 LINK OG SER B 271 CA CA B 301 1555 1555 2.42 LINK OD1 ASP B 273 CA CA B 301 1555 1555 2.34 LINK CA CA B 301 O HOH B 470 1555 1555 2.56 LINK CA CA B 301 O HOH B 508 1555 1555 2.46 SITE 1 AC1 6 GLU A 252 ASP A 269 SER A 271 ASP A 273 SITE 2 AC1 6 HOH A 488 HOH A 563 SITE 1 AC2 6 GLU B 252 ASP B 269 SER B 271 ASP B 273 SITE 2 AC2 6 HOH B 470 HOH B 508 SITE 1 AC3 14 LYS B 14 THR B 16 PHE B 17 TYR B 32 SITE 2 AC3 14 TYR B 67 VAL B 77 LYS B 78 GLU B 101 SITE 3 AC3 14 THR B 110 TYR B 111 ASP B 112 PHE B 150 SITE 4 AC3 14 ASN B 151 SER B 153 SITE 1 AC4 15 LYS B 162 ASN B 164 VAL B 165 SER B 166 SITE 2 AC4 15 PHE B 176 LYS B 216 GLY B 218 GLU B 219 SITE 3 AC4 15 GLU B 236 TYR B 244 LYS B 245 THR B 246 SITE 4 AC4 15 VAL B 277 THR B 278 LYS B 280 CRYST1 32.050 60.570 72.790 90.77 91.77 104.07 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031201 0.007820 0.001133 0.00000 SCALE2 0.000000 0.017020 0.000368 0.00000 SCALE3 0.000000 0.000000 0.013748 0.00000