HEADER TRANSFERASE/ANTIBIOTIC 20-OCT-17 6BBZ TITLE ROOM TEMPERATURE NEUTRON/X-RAY STRUCTURE OF SISOMICIN BOUND AAC-VIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AAC 3-VI PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AAC-VIA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER CLOACAE; SOURCE 3 ORGANISM_TAXID: 550; SOURCE 4 GENE: AAC 3-VI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACETYLTRANSFERASE, TRANSFERASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION; NEUTRON DIFFRACTION AUTHOR M.J.CUNEO,P.KUMAR REVDAT 4 04-OCT-23 6BBZ 1 REMARK LINK REVDAT 3 12-SEP-18 6BBZ 1 JRNL REVDAT 2 06-JUN-18 6BBZ 1 REMARK REVDAT 1 28-FEB-18 6BBZ 0 JRNL AUTH P.KUMAR,E.H.SERPERSU,M.J.CUNEO JRNL TITL A LOW-BARRIER HYDROGEN BOND MEDIATES ANTIBIOTIC RESISTANCE JRNL TITL 2 IN A NONCANONICAL CATALYTIC TRIAD. JRNL REF SCI ADV V. 4 S8667 2018 JRNL REFN ESSN 2375-2548 JRNL PMID 29632894 JRNL DOI 10.1126/SCIADV.AAS8667 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11_2567: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 X-RAY DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 25867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1286 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3364 - 3.9509 0.99 2773 146 0.1130 0.1430 REMARK 3 2 3.9509 - 3.1364 1.00 2752 146 0.1401 0.1712 REMARK 3 3 3.1364 - 2.7401 1.00 2753 135 0.1768 0.2002 REMARK 3 4 2.7401 - 2.4896 1.00 2724 150 0.1658 0.1887 REMARK 3 5 2.4896 - 2.3112 1.00 2727 138 0.1670 0.2333 REMARK 3 6 2.3112 - 2.1749 0.99 2737 144 0.1700 0.1994 REMARK 3 7 2.1749 - 2.0660 0.99 2725 139 0.1854 0.2159 REMARK 3 8 2.0660 - 1.9761 1.00 2729 147 0.2112 0.2616 REMARK 3 9 1.9761 - 1.9000 0.97 2661 141 0.2367 0.2669 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4776 REMARK 3 ANGLE : 0.810 8351 REMARK 3 CHIRALITY : 0.074 317 REMARK 3 PLANARITY : 0.004 919 REMARK 3 DIHEDRAL : 19.476 1240 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 3 NEUTRON DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 15512 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 763 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 15.4331 - 3.7477 0.92 2955 157 0.1379 0.1706 REMARK 3 2 3.7477 - 2.9817 0.96 3049 159 0.2039 0.2206 REMARK 3 3 2.9817 - 2.6068 0.94 3002 154 0.2557 0.2649 REMARK 3 4 2.6068 - 2.3694 0.91 2887 144 0.3070 0.3246 REMARK 3 5 2.3694 - 2.2001 0.90 2856 149 0.3596 0.3656 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4776 REMARK 3 ANGLE : 0.810 8351 REMARK 3 CHIRALITY : 0.074 317 REMARK 3 PLANARITY : 0.004 919 REMARK 3 DIHEDRAL : 19.476 1240 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BBZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230628. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25874 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 1.660 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6BC6 REMARK 200 REMARK 200 REMARK: NULL REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 01-JUL-17 REMARK 230 TEMPERATURE (KELVIN) : 298.0 REMARK 230 PH : 8.50 REMARK 230 NUMBER OF CRYSTALS USED : 1 REMARK 230 REMARK 230 NEUTRON SOURCE : NUCLEAR REACTOR REMARK 230 BEAMLINE : MANDI REMARK 230 WAVELENGTH OR RANGE (A) : 2.0-4.0 REMARK 230 MONOCHROMATOR : NULL REMARK 230 OPTICS : NULL REMARK 230 REMARK 230 DETECTOR TYPE : DIFFRACTOMETER REMARK 230 DETECTOR MANUFACTURER : ORNL ANGER CAMERA REMARK 230 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 230 DATA SCALING SOFTWARE : HKL-2000 REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : 15860 REMARK 230 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 230 RESOLUTION RANGE LOW (A) : 15.570 REMARK 230 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 230 DATA REDUNDANCY : 3.400 REMARK 230 R MERGE (I) : 0.14800 REMARK 230 R SYM (I) : NULL REMARK 230 FOR THE DATA SET : 10.2000 REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 230 COMPLETENESS FOR SHELL (%) : NULL REMARK 230 DATA REDUNDANCY IN SHELL : NULL REMARK 230 R MERGE FOR SHELL (I) : NULL REMARK 230 R SYM FOR SHELL (I) : NULL REMARK 230 FOR SHELL : NULL REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 230 SOFTWARE USED : PHASER REMARK 230 STARTING MODEL: PDB ENTRY 6BC6 REMARK 230 REMARK 230 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.5, 0.3 M MAGNESIUM REMARK 280 CHLORIDE, 15-17% PEG8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 22.36080 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.08450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.32882 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 22.36080 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.08450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 38.32882 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 517 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 PRO A 4 REMARK 465 ARG A 5 REMARK 465 LYS A 6 REMARK 465 ASN A 7 REMARK 465 GLY A 8 REMARK 465 ASP A 9 REMARK 465 LEU A 10 REMARK 465 HIS A 11 REMARK 465 GLU A 12 REMARK 465 PRO A 13 REMARK 465 ALA A 14 REMARK 465 THR A 15 REMARK 465 ALA A 16 REMARK 465 PRO A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 286 REMARK 465 PRO A 287 REMARK 465 ALA A 288 REMARK 465 ALA A 289 REMARK 465 ALA A 290 REMARK 465 ALA A 291 REMARK 465 LEU A 292 REMARK 465 LYS A 293 REMARK 465 PRO A 294 REMARK 465 LYS A 295 REMARK 465 GLN A 296 REMARK 465 ARG A 297 REMARK 465 ARG A 298 REMARK 465 ASP A 299 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 189 OE2 GLU A 192 1.20 REMARK 500 DD1 HIS A 189 OE2 GLU A 192 1.20 REMARK 500 O HOH A 404 D2 HOH A 418 1.47 REMARK 500 HE ARG A 31 O HOH A 402 1.56 REMARK 500 DE ARG A 31 O HOH A 402 1.56 REMARK 500 OE1 GLU A 242 HH12 ARG A 246 1.57 REMARK 500 OE1 GLU A 242 DH12 ARG A 246 1.57 REMARK 500 OE2 GLU A 231 O HOH A 401 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 79 -147.81 60.03 REMARK 500 PRO A 84 45.06 -83.47 REMARK 500 ARG A 162 -0.34 80.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 145 OD2 REMARK 620 2 ASP A 145 OD2 0.0 REMARK 620 3 HOH A 411 O 75.7 75.7 REMARK 620 4 HOH A 411 O 91.1 91.1 112.6 REMARK 620 5 HOH A 414 O 60.8 60.8 125.1 100.8 REMARK 620 6 HOH A 414 O 139.9 139.9 100.8 125.3 93.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SIS A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6BBR RELATED DB: PDB DBREF 6BBZ A 1 299 UNP Q47030 Q47030_ENTCL 1 299 SEQADV 6BBZ GLY A -2 UNP Q47030 EXPRESSION TAG SEQADV 6BBZ SER A -1 UNP Q47030 EXPRESSION TAG SEQADV 6BBZ HIS A 0 UNP Q47030 EXPRESSION TAG SEQRES 1 A 302 GLY SER HIS MET THR ASP PRO ARG LYS ASN GLY ASP LEU SEQRES 2 A 302 HIS GLU PRO ALA THR ALA PRO ALA THR PRO TRP SER LYS SEQRES 3 A 302 SER GLU LEU VAL ARG GLN LEU ARG ASP LEU GLY VAL ARG SEQRES 4 A 302 SER GLY ASP MET VAL MET PRO HIS VAL SER LEU ARG ALA SEQRES 5 A 302 VAL GLY PRO LEU ALA ASP GLY PRO GLN THR LEU VAL ASP SEQRES 6 A 302 ALA LEU ILE GLU ALA VAL GLY PRO THR GLY ASN ILE LEU SEQRES 7 A 302 ALA PHE VAL SER TRP ARG ASP SER PRO TYR GLU GLN THR SEQRES 8 A 302 LEU GLY HIS ASP ALA PRO PRO ALA ALA ILE ALA GLN SER SEQRES 9 A 302 TRP PRO ALA PHE ASP PRO ASP HIS ALA PRO ALA TYR PRO SEQRES 10 A 302 GLY PHE GLY ALA ILE ASN GLU PHE ILE ARG THR TYR PRO SEQRES 11 A 302 GLY CYS ARG ARG THR ALA HIS PRO ASP ALA SER MET ALA SEQRES 12 A 302 ALA ILE GLY PRO ASP ALA ALA TRP LEU VAL ALA PRO HIS SEQRES 13 A 302 GLU MET GLY ALA ALA TYR GLY PRO ARG SER PRO ILE ALA SEQRES 14 A 302 ARG PHE LEU ALA HIS ALA GLY LYS ILE LEU SER ILE GLY SEQRES 15 A 302 ALA GLY PRO ASP ALA VAL THR ALA LEU HIS TYR ALA GLU SEQRES 16 A 302 ALA VAL ALA ARG ILE GLU GLY LYS ARG ARG VAL THR TYR SEQRES 17 A 302 SER MET PRO LEU LEU ARG GLU GLY LYS ARG VAL TRP VAL SEQRES 18 A 302 THR THR SER ASP TRP ASP SER ASN GLY ILE LEU ASP GLU SEQRES 19 A 302 TYR ALA ALA PRO ASP GLY PRO ASP ALA VAL GLU ARG ILE SEQRES 20 A 302 ALA ARG ASP TYR LEU ALA ARG THR ARG VAL ALA GLN GLY SEQRES 21 A 302 PRO VAL GLY GLY ALA GLN SER ARG LEU ILE ASP ALA ALA SEQRES 22 A 302 ASP ILE VAL SER PHE GLY ILE GLU TRP LEU GLU ALA ARG SEQRES 23 A 302 HIS ALA ALA PRO ALA ALA ALA ALA LEU LYS PRO LYS GLN SEQRES 24 A 302 ARG ARG ASP HET SIS A 301 80 HET MG A 302 1 HETNAM SIS (1S,2S,3R,4S,6R)-4,6-DIAMINO-3-{[(2S,3R)-3-AMINO-6- HETNAM 2 SIS (AMINOMETHYL)-3,4-DIHYDRO-2H-PYRAN-2-YL]OXY}-2- HETNAM 3 SIS HYDROXYCYCLOHEXYL 3-DEOXY-4-C-METHYL-3-(METHYLAMINO)- HETNAM 4 SIS BETA-L-ARABINOPYRANOSIDE HETNAM MG MAGNESIUM ION HETSYN SIS SISOMICIN FORMUL 2 SIS C19 H37 N5 O7 FORMUL 3 MG MG 2+ FORMUL 4 HOH *126(H2 O) HELIX 1 AA1 SER A 22 GLY A 34 1 13 HELIX 2 AA2 SER A 46 GLY A 51 1 6 HELIX 3 AA3 GLY A 56 GLY A 69 1 14 HELIX 4 AA4 PRO A 84 LEU A 89 1 6 HELIX 5 AA5 PRO A 95 TRP A 102 1 8 HELIX 6 AA6 TYR A 113 GLY A 117 5 5 HELIX 7 AA7 ALA A 118 THR A 125 1 8 HELIX 8 AA8 ASP A 145 ALA A 151 1 7 HELIX 9 AA9 SER A 163 HIS A 171 1 9 HELIX 10 AB1 GLY A 181 THR A 186 5 6 HELIX 11 AB2 ALA A 187 ALA A 195 1 9 HELIX 12 AB3 LEU A 229 ALA A 233 5 5 HELIX 13 AB4 ASP A 239 THR A 252 1 14 HELIX 14 AB5 ALA A 269 HIS A 284 1 16 SHEET 1 AA1 7 ARG A 130 ARG A 131 0 SHEET 2 AA1 7 MET A 139 ILE A 142 -1 O ALA A 141 N ARG A 130 SHEET 3 AA1 7 ASN A 73 PHE A 77 -1 N ALA A 76 O ALA A 140 SHEET 4 AA1 7 MET A 40 VAL A 45 1 N VAL A 41 O LEU A 75 SHEET 5 AA1 7 LYS A 174 ILE A 178 1 O ILE A 178 N HIS A 44 SHEET 6 AA1 7 ALA A 262 ASP A 268 -1 O ILE A 267 N ILE A 175 SHEET 7 AA1 7 ALA A 255 VAL A 259 -1 N GLY A 257 O SER A 264 SHEET 1 AA2 2 ARG A 202 ARG A 211 0 SHEET 2 AA2 2 LYS A 214 TRP A 223 -1 O VAL A 216 N LEU A 209 LINK OD2 ASP A 145 MG MG A 302 1555 1555 2.88 LINK OD2 ASP A 145 MG MG A 302 1555 2556 2.88 LINK MG MG A 302 O HOH A 411 1555 1555 1.82 LINK MG MG A 302 O HOH A 411 1555 2556 1.82 LINK MG MG A 302 O HOH A 414 1555 1555 1.85 LINK MG MG A 302 O HOH A 414 1555 2556 1.85 CISPEP 1 ALA A 151 PRO A 152 0 -1.65 CISPEP 2 GLY A 237 PRO A 238 0 0.06 SITE 1 AC1 15 SER A 79 TYR A 85 GLU A 86 TYR A 113 SITE 2 AC1 15 PHE A 116 ASP A 136 TYR A 159 ASP A 183 SITE 3 AC1 15 HIS A 189 SER A 225 ASN A 226 HOH A 417 SITE 4 AC1 15 HOH A 418 HOH A 448 HOH A 475 SITE 1 AC2 3 ASP A 145 HOH A 411 HOH A 414 CRYST1 50.822 86.169 76.900 90.00 94.55 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019677 0.000000 0.001567 0.00000 SCALE2 0.000000 0.011605 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013045 0.00000