HEADER REPLICATION 20-OCT-17 6BCD TITLE CRYSTAL STRUCTURE OF REV7-K44A/R124A/A135D IN COMPLEX WITH REV3-RBM2 TITLE 2 (RESIDUES 1988-2014) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MITOTIC ARREST DEFICIENT 2-LIKE PROTEIN 2,MAD2-LIKE PROTEIN COMPND 5 2,REV7 HOMOLOG,HREV7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA POLYMERASE ZETA CATALYTIC SUBUNIT; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES 1988-2014; COMPND 12 SYNONYM: PROTEIN REVERSIONLESS 3-LIKE,HREV3; COMPND 13 EC: 2.7.7.7; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAD2L2, MAD2B, REV7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETDUET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: REV3L, POLZ, REV3; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PETDUET KEYWDS DNA DAMAGE TOLERANCE, TRANSLESION DNA SYNTHESIS, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR A.A.RIZZO,B.HAO,Y.LI,D.M.KORZHNEV REVDAT 7 04-OCT-23 6BCD 1 REMARK REVDAT 6 27-NOV-19 6BCD 1 REMARK REVDAT 5 19-SEP-18 6BCD 1 JRNL REVDAT 4 12-SEP-18 6BCD 1 JRNL REVDAT 3 29-AUG-18 6BCD 1 JRNL REVDAT 2 22-AUG-18 6BCD 1 SOURCE JRNL REVDAT 1 01-AUG-18 6BCD 0 JRNL AUTH A.A.RIZZO,F.M.VASSEL,N.CHATTERJEE,S.D'SOUZA,Y.LI,B.HAO, JRNL AUTH 2 M.T.HEMANN,G.C.WALKER,D.M.KORZHNEV JRNL TITL REV7 DIMERIZATION IS IMPORTANT FOR ASSEMBLY AND FUNCTION OF JRNL TITL 2 THE REV1/POL ZETA TRANSLESION SYNTHESIS COMPLEX. JRNL REF PROC. NATL. ACAD. SCI. V. 115 E8191 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30111544 JRNL DOI 10.1073/PNAS.1801149115 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 116.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 51936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2521 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3489 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1856 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83000 REMARK 3 B22 (A**2) : 0.83000 REMARK 3 B33 (A**2) : -2.69000 REMARK 3 B12 (A**2) : 0.42000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1944 ; 0.026 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1923 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2652 ; 2.367 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4442 ; 3.679 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 6.821 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;32.145 ;25.057 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 357 ;14.726 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.894 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 314 ; 0.148 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2162 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 415 ; 0.027 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 945 ; 3.255 ; 2.595 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 944 ; 3.255 ; 2.591 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1187 ; 4.690 ; 3.877 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6BCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 289.15 REMARK 200 PH : 5.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51936 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 116.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ABD (EXCLUDING REV3 PEPTIDE) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WELL SOLUTION CONTAINING 100 MM SODIUM REMARK 280 CITRATE, 1.6 M AMMONIUM SULFATE, PH=5.25 WAS MIXED AT 1:1 RATIO REMARK 280 WITH PROTEIN AT 45 MG/ML IN 5 MM HEPES, 100 MM NACL, 10 MM DTT, REMARK 280 PH=7.4, PH 5.25, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.84900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.69800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.69800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.84900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 SER A -5 REMARK 465 GLN A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 ASN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 HIS A 208 REMARK 465 LYS A 209 REMARK 465 GLY A 210 REMARK 465 SER A 211 REMARK 465 MET B 1987 REMARK 465 GLU B 1988 REMARK 465 GLU B 2014 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 175 O HOH A 301 2.04 REMARK 500 O HOH B 2115 O HOH B 2123 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 59 CD GLU A 59 OE1 0.091 REMARK 500 GLU A 96 CB GLU A 96 CG -0.135 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 66 CB - CG - OD2 ANGL. DEV. = -10.5 DEGREES REMARK 500 ASP A 79 CB - CG - OD1 ANGL. DEV. = 9.1 DEGREES REMARK 500 ASP A 89 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 153 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ASP A 178 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 MET A 181 CG - SD - CE ANGL. DEV. = -15.4 DEGREES REMARK 500 ARG A 185 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP A 195 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 110 -70.83 3.61 REMARK 500 ARG A 158 -17.73 -44.08 REMARK 500 GLU A 176 -39.36 -35.91 REMARK 500 HIS A 182 83.20 -60.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 109 ILE A 110 145.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6BC8 RELATED DB: PDB REMARK 900 6BC8 CONTAINS THE SAME COMPLEX WITH TWO FEWER MUTATIONS DBREF 6BCD A 1 211 UNP Q9UI95 MD2L2_HUMAN 1 211 DBREF 6BCD B 1988 2014 UNP O60673 REV3L_HUMAN 1988 2014 SEQADV 6BCD MET A -15 UNP Q9UI95 INITIATING METHIONINE SEQADV 6BCD GLY A -14 UNP Q9UI95 EXPRESSION TAG SEQADV 6BCD SER A -13 UNP Q9UI95 EXPRESSION TAG SEQADV 6BCD SER A -12 UNP Q9UI95 EXPRESSION TAG SEQADV 6BCD HIS A -11 UNP Q9UI95 EXPRESSION TAG SEQADV 6BCD HIS A -10 UNP Q9UI95 EXPRESSION TAG SEQADV 6BCD HIS A -9 UNP Q9UI95 EXPRESSION TAG SEQADV 6BCD HIS A -8 UNP Q9UI95 EXPRESSION TAG SEQADV 6BCD HIS A -7 UNP Q9UI95 EXPRESSION TAG SEQADV 6BCD HIS A -6 UNP Q9UI95 EXPRESSION TAG SEQADV 6BCD SER A -5 UNP Q9UI95 EXPRESSION TAG SEQADV 6BCD GLN A -4 UNP Q9UI95 EXPRESSION TAG SEQADV 6BCD ASP A -3 UNP Q9UI95 EXPRESSION TAG SEQADV 6BCD PRO A -2 UNP Q9UI95 EXPRESSION TAG SEQADV 6BCD ASN A -1 UNP Q9UI95 EXPRESSION TAG SEQADV 6BCD SER A 0 UNP Q9UI95 EXPRESSION TAG SEQADV 6BCD ALA A 44 UNP Q9UI95 LYS 44 ENGINEERED MUTATION SEQADV 6BCD ALA A 124 UNP Q9UI95 ARG 124 ENGINEERED MUTATION SEQADV 6BCD ASP A 135 UNP Q9UI95 ALA 135 ENGINEERED MUTATION SEQADV 6BCD MET B 1987 UNP O60673 INITIATING METHIONINE SEQRES 1 A 227 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 227 PRO ASN SER MET THR THR LEU THR ARG GLN ASP LEU ASN SEQRES 3 A 227 PHE GLY GLN VAL VAL ALA ASP VAL LEU CYS GLU PHE LEU SEQRES 4 A 227 GLU VAL ALA VAL HIS LEU ILE LEU TYR VAL ARG GLU VAL SEQRES 5 A 227 TYR PRO VAL GLY ILE PHE GLN ALA ARG LYS LYS TYR ASN SEQRES 6 A 227 VAL PRO VAL GLN MET SER CYS HIS PRO GLU LEU ASN GLN SEQRES 7 A 227 TYR ILE GLN ASP THR LEU HIS CYS VAL LYS PRO LEU LEU SEQRES 8 A 227 GLU LYS ASN ASP VAL GLU LYS VAL VAL VAL VAL ILE LEU SEQRES 9 A 227 ASP LYS GLU HIS ARG PRO VAL GLU LYS PHE VAL PHE GLU SEQRES 10 A 227 ILE THR GLN PRO PRO LEU LEU SER ILE SER SER ASP SER SEQRES 11 A 227 LEU LEU SER HIS VAL GLU GLN LEU LEU ALA ALA PHE ILE SEQRES 12 A 227 LEU LYS ILE SER VAL CYS ASP ASP VAL LEU ASP HIS ASN SEQRES 13 A 227 PRO PRO GLY CYS THR PHE THR VAL LEU VAL HIS THR ARG SEQRES 14 A 227 GLU ALA ALA THR ARG ASN MET GLU LYS ILE GLN VAL ILE SEQRES 15 A 227 LYS ASP PHE PRO TRP ILE LEU ALA ASP GLU GLN ASP VAL SEQRES 16 A 227 HIS MET HIS ASP PRO ARG LEU ILE PRO LEU LYS THR MET SEQRES 17 A 227 THR SER ASP ILE LEU LYS MET GLN LEU TYR VAL GLU GLU SEQRES 18 A 227 ARG ALA HIS LYS GLY SER SEQRES 1 B 28 MET GLU ASP LYS LYS ILE VAL ILE MET PRO CYS LYS CYS SEQRES 2 B 28 ALA PRO SER ARG GLN LEU VAL GLN VAL TRP LEU GLN ALA SEQRES 3 B 28 LYS GLU FORMUL 3 HOH *187(H2 O) HELIX 1 AA1 THR A 5 PHE A 11 5 7 HELIX 2 AA2 GLY A 12 ARG A 34 1 23 HELIX 3 AA3 PRO A 38 GLY A 40 5 3 HELIX 4 AA4 HIS A 57 LYS A 77 1 21 HELIX 5 AA5 HIS A 118 VAL A 132 1 15 HELIX 6 AA6 CYS A 133 VAL A 136 5 4 HELIX 7 AA7 ASP A 175 HIS A 180 1 6 HELIX 8 AA8 SER B 2002 LYS B 2013 1 12 SHEET 1 AA1 2 PHE A 42 LYS A 47 0 SHEET 2 AA1 2 VAL A 50 SER A 55 -1 O MET A 54 N GLN A 43 SHEET 1 AA2 8 ILE A 163 ILE A 166 0 SHEET 2 AA2 8 PHE A 169 LEU A 173 -1 O TRP A 171 N GLN A 164 SHEET 3 AA2 8 LYS B1991 PRO B1996 -1 O MET B1995 N ILE A 172 SHEET 4 AA2 8 THR A 145 ALA A 155 -1 N THR A 152 O ILE B1992 SHEET 5 AA2 8 VAL A 80 LEU A 88 -1 N GLU A 81 O HIS A 151 SHEET 6 AA2 8 PRO A 94 THR A 103 -1 O GLU A 96 N ILE A 87 SHEET 7 AA2 8 LYS A 198 GLU A 205 -1 O TYR A 202 N VAL A 99 SHEET 8 AA2 8 ARG A 185 THR A 193 -1 N LYS A 190 O LEU A 201 CRYST1 64.580 64.580 116.547 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015485 0.008940 0.000000 0.00000 SCALE2 0.000000 0.017880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008580 0.00000