HEADER HYDROLASE/DNA 20-OCT-17 6BD0 TITLE I-ONUI K227Y, D236A BOUND TO COGNATE SUBSTRATE (PRE-CLEAVAGE COMPLEX) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN 3/HOMING ENDONUCLEASE-LIKE PROTEIN COMPND 3 FUSION; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (25-MER); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (25-MER); COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OPHIOSTOMA NOVO-ULMI SUBSP. AMERICANA; SOURCE 3 ORGANISM_TAXID: 170178; SOURCE 4 GENE: HEG FUSION, RPS3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: OPHIOSTOMA NOVO-ULMI; SOURCE 10 ORGANISM_TAXID: 42373; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: OPHIOSTOMA NOVO-ULMI; SOURCE 14 ORGANISM_TAXID: 42373 KEYWDS NUCLEIC ACID, HYDROLASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.BROWN,K.ZHANG,M.LAFORET,T.A.MCMURROUGH,G.B.GLOOR,D.R.EDGELL,M.JUNOP REVDAT 2 13-MAR-24 6BD0 1 LINK REVDAT 1 24-OCT-18 6BD0 0 JRNL AUTH M.LAFORET,T.A.MCMURROUGH,C.BROWN,K.ZHANG,M.JUNOP,G.B.GLOOR, JRNL AUTH 2 D.R.EDGELL JRNL TITL I-ONUI K227Y, D236A BOUND TO COGNATE SUBSTRATE (PRE-CLEAVAGE JRNL TITL 2 COMPLEX) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 80292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 4108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.1070 - 4.4524 1.00 2859 165 0.1529 0.1697 REMARK 3 2 4.4524 - 3.5349 1.00 2720 158 0.1333 0.1413 REMARK 3 3 3.5349 - 3.0883 1.00 2719 126 0.1444 0.1608 REMARK 3 4 3.0883 - 2.8060 1.00 2657 134 0.1720 0.1885 REMARK 3 5 2.8060 - 2.6050 1.00 2682 145 0.1700 0.2004 REMARK 3 6 2.6050 - 2.4514 1.00 2651 133 0.1655 0.1739 REMARK 3 7 2.4514 - 2.3287 1.00 2631 136 0.1671 0.2088 REMARK 3 8 2.3287 - 2.2273 1.00 2636 149 0.1644 0.1684 REMARK 3 9 2.2273 - 2.1416 1.00 2647 138 0.1560 0.2087 REMARK 3 10 2.1416 - 2.0677 1.00 2625 150 0.1552 0.1979 REMARK 3 11 2.0677 - 2.0030 1.00 2603 153 0.1603 0.1986 REMARK 3 12 2.0030 - 1.9458 1.00 2635 141 0.1629 0.1977 REMARK 3 13 1.9458 - 1.8946 1.00 2597 140 0.1647 0.1953 REMARK 3 14 1.8946 - 1.8483 1.00 2637 130 0.1603 0.2075 REMARK 3 15 1.8483 - 1.8063 1.00 2603 141 0.1683 0.1945 REMARK 3 16 1.8063 - 1.7679 1.00 2586 158 0.1683 0.2028 REMARK 3 17 1.7679 - 1.7325 1.00 2608 132 0.1685 0.1992 REMARK 3 18 1.7325 - 1.6998 1.00 2596 136 0.1686 0.2238 REMARK 3 19 1.6998 - 1.6695 1.00 2571 151 0.1783 0.2255 REMARK 3 20 1.6695 - 1.6412 1.00 2645 126 0.1831 0.1963 REMARK 3 21 1.6412 - 1.6147 1.00 2563 151 0.1868 0.2404 REMARK 3 22 1.6147 - 1.5899 1.00 2590 148 0.1943 0.2197 REMARK 3 23 1.5899 - 1.5665 1.00 2621 151 0.1970 0.2331 REMARK 3 24 1.5665 - 1.5444 1.00 2556 129 0.2017 0.2336 REMARK 3 25 1.5444 - 1.5235 1.00 2636 130 0.2187 0.2422 REMARK 3 26 1.5235 - 1.5038 1.00 2538 139 0.2199 0.2349 REMARK 3 27 1.5038 - 1.4850 1.00 2566 154 0.2375 0.2735 REMARK 3 28 1.4850 - 1.4671 1.00 2610 152 0.2498 0.2880 REMARK 3 29 1.4671 - 1.4500 1.00 2596 112 0.2700 0.3061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 3600 REMARK 3 ANGLE : 1.796 5071 REMARK 3 CHIRALITY : 0.103 573 REMARK 3 PLANARITY : 0.014 463 REMARK 3 DIHEDRAL : 21.700 1404 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80496 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 66.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.18 M TRI-AMMONIUM CITRATE 20% W/V REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.94000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.91500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.91500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.94000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 ASN A 126 CG OD1 ND2 REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 DG C 21 O HOH C 101 1.81 REMARK 500 O HOH C 185 O HOH C 202 1.84 REMARK 500 O HOH A 929 O HOH A 979 1.85 REMARK 500 O HOH A 832 O HOH A 950 1.86 REMARK 500 O3' DC B 25 O HOH B 101 1.92 REMARK 500 O HOH C 125 O HOH C 214 1.92 REMARK 500 O HOH B 189 O HOH C 203 1.92 REMARK 500 O HOH A 878 O HOH A 987 1.96 REMARK 500 O HOH A 901 O HOH A 923 1.97 REMARK 500 O HOH C 147 O HOH C 167 1.99 REMARK 500 O HOH A 556 O HOH A 867 1.99 REMARK 500 O HOH A 653 O HOH A 889 2.00 REMARK 500 O HOH A 696 O HOH A 902 2.00 REMARK 500 O HOH A 600 O HOH A 688 2.00 REMARK 500 O HOH A 522 O HOH A 776 2.01 REMARK 500 O HOH A 566 O HOH A 921 2.01 REMARK 500 O HOH B 183 O HOH B 201 2.02 REMARK 500 O HOH A 865 O HOH A 951 2.04 REMARK 500 O HOH A 882 O HOH A 947 2.08 REMARK 500 O HOH A 808 O HOH A 818 2.09 REMARK 500 O HOH A 589 O HOH A 893 2.09 REMARK 500 O HOH C 103 O HOH C 202 2.10 REMARK 500 O HOH A 526 O HOH A 709 2.10 REMARK 500 NZ LYS A 65 O HOH A 501 2.11 REMARK 500 O5' DG C 1 O HOH C 102 2.11 REMARK 500 O HOH C 167 O HOH C 195 2.12 REMARK 500 O HOH A 865 O HOH A 944 2.13 REMARK 500 O HOH A 630 O HOH A 881 2.13 REMARK 500 O HOH A 887 O HOH B 202 2.15 REMARK 500 O HOH A 944 O HOH A 951 2.16 REMARK 500 O HOH A 672 O HOH B 193 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 566 O HOH A 725 3644 1.95 REMARK 500 O HOH A 509 O HOH A 944 3644 1.99 REMARK 500 NZ LYS A 163 OE2 GLU A 264 3654 2.14 REMARK 500 O HOH A 516 O HOH A 838 3644 2.16 REMARK 500 O HOH A 509 O HOH A 865 3644 2.16 REMARK 500 O HOH A 903 O HOH C 118 3554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT B 4 O3' DT B 4 C3' -0.044 REMARK 500 DT B 10 C2 DT B 10 N3 -0.051 REMARK 500 DT B 12 P DT B 12 O5' 0.067 REMARK 500 DC B 18 N1 DC B 18 C6 0.040 REMARK 500 DT C 3 C5' DT C 3 C4' 0.070 REMARK 500 DA C 7 C6 DA C 7 N6 0.049 REMARK 500 DG C 20 N1 DG C 20 C2 0.061 REMARK 500 DA C 22 O3' DA C 22 C3' -0.037 REMARK 500 DA C 22 N9 DA C 22 C4 0.047 REMARK 500 DA C 23 O3' DA C 23 C3' -0.049 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 302 CG1 - CB - CG2 ANGL. DEV. = 10.0 DEGREES REMARK 500 DC B 8 C1' - O4' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 DC B 8 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT B 10 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DA B 11 OP1 - P - OP2 ANGL. DEV. = 9.0 DEGREES REMARK 500 DA B 11 O5' - P - OP1 ANGL. DEV. = -7.0 DEGREES REMARK 500 DC B 17 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC B 18 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DC B 18 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT B 22 N3 - C4 - O4 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC B 25 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT C 3 C5' - C4' - C3' ANGL. DEV. = 9.2 DEGREES REMARK 500 DT C 3 C1' - O4' - C4' ANGL. DEV. = -6.8 DEGREES REMARK 500 DA C 5 OP1 - P - OP2 ANGL. DEV. = 10.8 DEGREES REMARK 500 DG C 8 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA C 22 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 DA C 24 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DG C 25 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 139 -120.88 52.60 REMARK 500 SER A 230 -129.03 58.04 REMARK 500 ASN A 298 -125.00 49.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT B 13 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 993 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 994 DISTANCE = 6.76 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 21 O REMARK 620 2 GLU A 178 OE2 93.0 REMARK 620 3 HOH A 633 O 83.7 82.3 REMARK 620 4 HOH A 848 O 87.4 165.7 83.5 REMARK 620 5 DC B 14 OP1 178.1 87.6 98.1 92.5 REMARK 620 6 DA C 16 OP2 85.7 103.0 168.5 91.3 92.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 22 OE2 REMARK 620 2 GLY A 177 O 86.7 REMARK 620 3 HOH A 731 O 89.3 91.0 REMARK 620 4 HOH A 837 O 168.1 85.7 81.7 REMARK 620 5 DA B 15 OP2 90.5 80.8 171.7 97.2 REMARK 620 6 DT C 15 OP1 92.5 178.3 87.5 94.8 100.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 268 OD1 REMARK 620 2 ASP A 268 OD2 51.7 REMARK 620 3 HOH A 698 O 149.3 155.5 REMARK 620 4 HOH A 724 O 72.9 124.4 77.5 REMARK 620 5 HOH A 743 O 89.2 89.0 101.1 94.0 REMARK 620 6 HOH A 805 O 128.1 76.5 81.6 159.0 87.8 REMARK 620 7 HOH A 811 O 84.9 81.4 87.8 91.4 170.4 90.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 DBREF 6BD0 A 5 303 UNP Q4VWW5 Q4VWW5_OPHNO 417 715 DBREF 6BD0 B 1 25 PDB 6BD0 6BD0 1 25 DBREF 6BD0 C 1 25 PDB 6BD0 6BD0 1 25 SEQADV 6BD0 GLU A 4 UNP Q4VWW5 EXPRESSION TAG SEQADV 6BD0 TYR A 227 UNP Q4VWW5 LYS 639 ENGINEERED MUTATION SEQADV 6BD0 ALA A 236 UNP Q4VWW5 ASP 648 ENGINEERED MUTATION SEQRES 1 A 300 GLU SER ARG ARG GLU SER ILE ASN PRO TRP ILE LEU THR SEQRES 2 A 300 GLY PHE ALA ASP ALA GLU GLY SER PHE LEU LEU ARG ILE SEQRES 3 A 300 ARG ASN ASN ASN LYS SER SER VAL GLY TYR SER THR GLU SEQRES 4 A 300 LEU GLY PHE GLN ILE THR LEU HIS ASN LYS ASP LYS SER SEQRES 5 A 300 ILE LEU GLU ASN ILE GLN SER THR TRP LYS VAL GLY VAL SEQRES 6 A 300 ILE ALA ASN SER GLY ASP ASN ALA VAL SER LEU LYS VAL SEQRES 7 A 300 THR ARG PHE GLU ASP LEU LYS VAL ILE ILE ASP HIS PHE SEQRES 8 A 300 GLU LYS TYR PRO LEU ILE THR GLN LYS LEU GLY ASP TYR SEQRES 9 A 300 MET LEU PHE LYS GLN ALA PHE CYS VAL MET GLU ASN LYS SEQRES 10 A 300 GLU HIS LEU LYS ILE ASN GLY ILE LYS GLU LEU VAL ARG SEQRES 11 A 300 ILE LYS ALA LYS LEU ASN TRP GLY LEU THR ASP GLU LEU SEQRES 12 A 300 LYS LYS ALA PHE PRO GLU ILE ILE SER LYS GLU ARG SER SEQRES 13 A 300 LEU ILE ASN LYS ASN ILE PRO ASN PHE LYS TRP LEU ALA SEQRES 14 A 300 GLY PHE THR SER GLY GLU GLY CYS PHE PHE VAL ASN LEU SEQRES 15 A 300 ILE LYS SER LYS SER LYS LEU GLY VAL GLN VAL GLN LEU SEQRES 16 A 300 VAL PHE SER ILE THR GLN HIS ILE LYS ASP LYS ASN LEU SEQRES 17 A 300 MET ASN SER LEU ILE THR TYR LEU GLY CYS GLY TYR ILE SEQRES 18 A 300 LYS GLU TYR ASN LYS SER GLU PHE SER TRP LEU ALA PHE SEQRES 19 A 300 VAL VAL THR LYS PHE SER ASP ILE ASN ASP LYS ILE ILE SEQRES 20 A 300 PRO VAL PHE GLN GLU ASN THR LEU ILE GLY VAL LYS LEU SEQRES 21 A 300 GLU ASP PHE GLU ASP TRP CYS LYS VAL ALA LYS LEU ILE SEQRES 22 A 300 GLU GLU LYS LYS HIS LEU THR GLU SER GLY LEU ASP GLU SEQRES 23 A 300 ILE LYS LYS ILE LYS LEU ASN MET ASN LYS GLY ARG VAL SEQRES 24 A 300 PHE SEQRES 1 B 25 DC DT DT DT DC DC DA DC DT DT DA DT DT SEQRES 2 B 25 DC DA DA DC DC DT DT DT DT DA DC DC SEQRES 1 C 25 DG DG DT DA DA DA DA DG DG DT DT DG DA SEQRES 2 C 25 DA DT DA DA DG DT DG DG DA DA DA DG HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HETNAM CA CALCIUM ION FORMUL 4 CA 3(CA 2+) FORMUL 7 HOH *744(H2 O) HELIX 1 AA1 ASN A 11 GLU A 22 1 12 HELIX 2 AA2 ASP A 53 LYS A 65 1 13 HELIX 3 AA3 ARG A 83 TYR A 97 1 15 HELIX 4 AA4 GLN A 102 ASN A 119 1 18 HELIX 5 AA5 LYS A 120 LEU A 123 5 4 HELIX 6 AA6 LYS A 124 ALA A 136 1 13 HELIX 7 AA7 THR A 143 PHE A 150 1 8 HELIX 8 AA8 ASN A 167 GLU A 178 1 12 HELIX 9 AA9 ASP A 208 GLY A 220 1 13 HELIX 10 AB1 LYS A 241 LYS A 248 1 8 HELIX 11 AB2 LYS A 248 ASN A 256 1 9 HELIX 12 AB3 GLY A 260 GLU A 278 1 19 HELIX 13 AB4 LYS A 279 LEU A 282 5 4 HELIX 14 AB5 THR A 283 ASN A 296 1 14 HELIX 15 AB6 MET A 297 ARG A 301 5 5 SHEET 1 AA1 4 GLY A 23 ASN A 31 0 SHEET 2 AA1 4 TYR A 39 HIS A 50 -1 O GLU A 42 N ARG A 28 SHEET 3 AA1 4 ALA A 76 VAL A 81 -1 O VAL A 81 N PHE A 45 SHEET 4 AA1 4 VAL A 68 SER A 72 -1 N ALA A 70 O SER A 78 SHEET 1 AA2 4 GLY A 179 LYS A 187 0 SHEET 2 AA2 4 VAL A 194 HIS A 205 -1 O GLN A 197 N ASN A 184 SHEET 3 AA2 4 PHE A 232 VAL A 239 -1 O LEU A 235 N GLN A 204 SHEET 4 AA2 4 TYR A 223 LYS A 229 -1 N TYR A 227 O TRP A 234 LINK O ALA A 21 CA CA A 402 1555 1555 2.31 LINK OE2 GLU A 22 CA CA A 401 1555 1555 2.30 LINK O GLY A 177 CA CA A 401 1555 1555 2.38 LINK OE2 GLU A 178 CA CA A 402 1555 1555 2.27 LINK OD1 ASP A 268 CA CA A 403 1555 1555 2.50 LINK OD2 ASP A 268 CA CA A 403 1555 1555 2.46 LINK CA CA A 401 O HOH A 731 1555 1555 2.30 LINK CA CA A 401 O HOH A 837 1555 1555 2.45 LINK CA CA A 401 OP2 DA B 15 1555 1555 2.34 LINK CA CA A 401 OP1 DT C 15 1555 1555 2.26 LINK CA CA A 402 O HOH A 633 1555 1555 2.36 LINK CA CA A 402 O HOH A 848 1555 1555 2.38 LINK CA CA A 402 OP1 DC B 14 1555 1555 2.21 LINK CA CA A 402 OP2 DA C 16 1555 1555 2.24 LINK CA CA A 403 O HOH A 698 1555 3644 2.41 LINK CA CA A 403 O HOH A 724 1555 1555 2.36 LINK CA CA A 403 O HOH A 743 1555 1555 2.32 LINK CA CA A 403 O HOH A 805 1555 1555 2.42 LINK CA CA A 403 O HOH A 811 1555 1555 2.32 SITE 1 AC1 6 GLU A 22 GLY A 177 HOH A 731 HOH A 837 SITE 2 AC1 6 DA B 15 DT C 15 SITE 1 AC2 6 ALA A 21 GLU A 178 HOH A 633 HOH A 848 SITE 2 AC2 6 DC B 14 DA C 16 SITE 1 AC3 6 ASP A 268 HOH A 698 HOH A 724 HOH A 743 SITE 2 AC3 6 HOH A 805 HOH A 811 CRYST1 41.880 66.740 159.830 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023878 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014984 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006257 0.00000