HEADER OXIDOREDUCTASE 25-OCT-17 6BEJ TITLE CRYSTAL STRUCTURE OF MANGANESE SUPEROXIDE DISMUTASE FROM XANTHOMONAS TITLE 2 CITRI COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: E, A; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CITRI; SOURCE 3 ORGANISM_COMMON: XANTHOMONAS CAMPESTRIS PV. CITRI; SOURCE 4 ORGANISM_TAXID: 346; SOURCE 5 GENE: IB69_010705; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLAMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ENZYME, SUPEROXIDE DISMUTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.S.GOTO,A.V.ALEXANDRINO,C.M.PEREIRA,D.C.MENDOCA,D.A.LEONARDO, AUTHOR 2 H.M.PEREIRA,R.C.GARRATT,M.T.M.NOVO-MANSUR REVDAT 6 04-OCT-23 6BEJ 1 LINK REVDAT 5 01-JAN-20 6BEJ 1 REMARK REVDAT 4 17-APR-19 6BEJ 1 REMARK REVDAT 3 20-FEB-19 6BEJ 1 REMARK REVDAT 2 23-JAN-19 6BEJ 1 JRNL REVDAT 1 31-OCT-18 6BEJ 0 JRNL AUTH D.A.L.CABREJOS,A.V.ALEXANDRINO,C.M.PEREIRA,D.C.MENDONCA, JRNL AUTH 2 H.D.PEREIRA,M.T.M.NOVO-MANSUR,R.C.GARRATT,L.S.GOTO JRNL TITL STRUCTURAL CHARACTERIZATION OF A PATHOGENICITY-RELATED JRNL TITL 2 SUPEROXIDE DISMUTASE CODIFIED BY A PROBABLY ESSENTIAL GENE JRNL TITL 3 IN XANTHOMONAS CITRI SUBSP. CITRI. JRNL REF PLOS ONE V. 14 09988 2019 JRNL REFN ESSN 1932-6203 JRNL PMID 30615696 JRNL DOI 10.1371/JOURNAL.PONE.0209988 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 30866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9852 - 4.2076 0.99 2862 151 0.1786 0.2089 REMARK 3 2 4.2076 - 3.3415 0.99 2740 144 0.1755 0.2032 REMARK 3 3 3.3415 - 2.9196 0.99 2696 142 0.2015 0.2604 REMARK 3 4 2.9196 - 2.6529 0.98 2668 141 0.2134 0.2628 REMARK 3 5 2.6529 - 2.4628 0.98 2659 140 0.2246 0.2958 REMARK 3 6 2.4628 - 2.3177 0.98 2624 138 0.2272 0.3260 REMARK 3 7 2.3177 - 2.2017 0.99 2656 140 0.2352 0.3053 REMARK 3 8 2.2017 - 2.1059 1.00 2654 140 0.2260 0.2910 REMARK 3 9 2.1059 - 2.0248 1.00 2657 139 0.2390 0.3124 REMARK 3 10 2.0248 - 1.9550 1.00 2660 141 0.2427 0.2825 REMARK 3 11 1.9550 - 1.8939 0.92 2446 128 0.2915 0.3455 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3250 REMARK 3 ANGLE : 0.688 4445 REMARK 3 CHIRALITY : 0.044 469 REMARK 3 PLANARITY : 0.005 588 REMARK 3 DIHEDRAL : 14.391 1885 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 2 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6786 68.3548 22.3085 REMARK 3 T TENSOR REMARK 3 T11: 0.1932 T22: 0.1324 REMARK 3 T33: 0.2501 T12: -0.0084 REMARK 3 T13: 0.0366 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 2.5466 L22: 1.7813 REMARK 3 L33: 5.2856 L12: -0.0802 REMARK 3 L13: 0.2255 L23: 0.0754 REMARK 3 S TENSOR REMARK 3 S11: -0.1120 S12: -0.0638 S13: -0.2369 REMARK 3 S21: -0.0727 S22: 0.0068 S23: 0.2124 REMARK 3 S31: 0.2479 S32: -0.2859 S33: 0.0869 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 98 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1176 77.2829 9.7540 REMARK 3 T TENSOR REMARK 3 T11: 0.2412 T22: 0.1610 REMARK 3 T33: 0.2510 T12: 0.0383 REMARK 3 T13: -0.0091 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 3.3258 L22: 2.7998 REMARK 3 L33: 3.1906 L12: -1.0580 REMARK 3 L13: 0.1426 L23: -0.0999 REMARK 3 S TENSOR REMARK 3 S11: 0.1121 S12: 0.2151 S13: 0.2535 REMARK 3 S21: -0.2845 S22: -0.0669 S23: 0.2988 REMARK 3 S31: -0.3098 S32: -0.3917 S33: -0.0291 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3026 57.9208 5.9332 REMARK 3 T TENSOR REMARK 3 T11: 0.5717 T22: 0.4446 REMARK 3 T33: 0.3182 T12: 0.2748 REMARK 3 T13: 0.1258 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.4164 L22: 4.7827 REMARK 3 L33: 1.3759 L12: -0.9187 REMARK 3 L13: 1.3890 L23: -0.7532 REMARK 3 S TENSOR REMARK 3 S11: -0.1384 S12: 0.0927 S13: -0.4041 REMARK 3 S21: -0.3666 S22: -0.1163 S23: -0.1530 REMARK 3 S31: 0.5669 S32: 0.8687 S33: -0.0641 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4957 73.3903 2.6233 REMARK 3 T TENSOR REMARK 3 T11: 0.2458 T22: 0.3726 REMARK 3 T33: 0.1846 T12: -0.0257 REMARK 3 T13: 0.0120 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 4.1009 L22: 6.4480 REMARK 3 L33: 3.8225 L12: -0.1012 REMARK 3 L13: 0.4616 L23: -1.6956 REMARK 3 S TENSOR REMARK 3 S11: -0.1597 S12: -0.0424 S13: 0.1563 REMARK 3 S21: -0.3529 S22: 0.1339 S23: -0.1839 REMARK 3 S31: -0.0768 S32: 0.9373 S33: 0.3505 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1155 82.5560 8.0102 REMARK 3 T TENSOR REMARK 3 T11: 0.5672 T22: 0.8774 REMARK 3 T33: 0.5057 T12: -0.3123 REMARK 3 T13: 0.0167 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 2.5597 L22: 2.0717 REMARK 3 L33: 2.7556 L12: -0.2604 REMARK 3 L13: 1.4931 L23: -0.5471 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: -0.0983 S13: 0.4220 REMARK 3 S21: -0.0370 S22: -0.1899 S23: -0.7485 REMARK 3 S31: -0.7974 S32: 1.3812 S33: 0.1607 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.6818 74.1251 10.6533 REMARK 3 T TENSOR REMARK 3 T11: 0.2143 T22: 0.4698 REMARK 3 T33: 0.2100 T12: -0.0473 REMARK 3 T13: 0.0032 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 4.4808 L22: 3.8667 REMARK 3 L33: 4.6748 L12: -1.0448 REMARK 3 L13: 0.5629 L23: 0.6607 REMARK 3 S TENSOR REMARK 3 S11: -0.0964 S12: -0.3546 S13: 0.1909 REMARK 3 S21: -0.0604 S22: -0.0644 S23: -0.3305 REMARK 3 S31: -0.3260 S32: 1.0740 S33: 0.1249 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.5490 57.3545 26.7805 REMARK 3 T TENSOR REMARK 3 T11: 0.5357 T22: 1.2439 REMARK 3 T33: 0.4996 T12: 0.5559 REMARK 3 T13: 0.0756 T23: 0.1192 REMARK 3 L TENSOR REMARK 3 L11: 0.3979 L22: 0.5684 REMARK 3 L33: 0.5459 L12: -0.1709 REMARK 3 L13: 0.3512 L23: -0.0879 REMARK 3 S TENSOR REMARK 3 S11: -0.1065 S12: -0.2830 S13: -0.1599 REMARK 3 S21: -0.0100 S22: -0.1155 S23: -0.3622 REMARK 3 S31: 0.1347 S32: 0.3156 S33: -0.5064 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1991 64.3637 26.6855 REMARK 3 T TENSOR REMARK 3 T11: 0.3483 T22: 0.6231 REMARK 3 T33: 0.2604 T12: 0.2185 REMARK 3 T13: 0.0347 T23: 0.0610 REMARK 3 L TENSOR REMARK 3 L11: 3.2993 L22: 2.6572 REMARK 3 L33: 1.8947 L12: -1.5798 REMARK 3 L13: 2.0072 L23: 0.1577 REMARK 3 S TENSOR REMARK 3 S11: -0.3403 S12: -0.3452 S13: -0.4358 REMARK 3 S21: 0.6482 S22: 0.2283 S23: 0.0493 REMARK 3 S31: 0.2474 S32: 0.7168 S33: 0.0325 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9505 67.1750 19.9057 REMARK 3 T TENSOR REMARK 3 T11: 0.2824 T22: 0.5780 REMARK 3 T33: 0.1977 T12: 0.0639 REMARK 3 T13: 0.0629 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 2.7230 L22: 1.6854 REMARK 3 L33: 2.3131 L12: -0.9006 REMARK 3 L13: 1.4083 L23: -0.7722 REMARK 3 S TENSOR REMARK 3 S11: -0.1084 S12: -0.5085 S13: 0.1466 REMARK 3 S21: 0.0667 S22: -0.2105 S23: -0.2005 REMARK 3 S31: 0.2264 S32: 0.8954 S33: 0.2477 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1899 55.3262 21.2437 REMARK 3 T TENSOR REMARK 3 T11: 0.4897 T22: 0.4648 REMARK 3 T33: 0.4140 T12: 0.2728 REMARK 3 T13: 0.0760 T23: 0.0931 REMARK 3 L TENSOR REMARK 3 L11: 2.3500 L22: 0.1370 REMARK 3 L33: 0.7224 L12: -0.1682 REMARK 3 L13: -1.3009 L23: 0.1061 REMARK 3 S TENSOR REMARK 3 S11: -0.4221 S12: -0.6021 S13: -0.6685 REMARK 3 S21: 0.2837 S22: 0.2758 S23: -0.4394 REMARK 3 S31: 0.4336 S32: 0.3460 S33: 0.0833 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.1956 62.9053 20.4300 REMARK 3 T TENSOR REMARK 3 T11: 0.3662 T22: 1.3308 REMARK 3 T33: 0.4468 T12: 0.2758 REMARK 3 T13: 0.0951 T23: 0.2812 REMARK 3 L TENSOR REMARK 3 L11: 0.1802 L22: 0.0012 REMARK 3 L33: 0.0531 L12: -0.0118 REMARK 3 L13: -0.0978 L23: 0.0078 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: 0.1677 S13: 0.1335 REMARK 3 S21: -0.0137 S22: -0.1161 S23: -0.1263 REMARK 3 S31: 0.0810 S32: 0.4949 S33: 0.1729 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 2 THROUGH 66 OR RESID REMARK 3 68 THROUGH 96 OR (RESID 97 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 98 THROUGH 112 OR (RESID 113 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 114 THROUGH 186 OR REMARK 3 RESID 188 THROUGH 202)) REMARK 3 SELECTION : (CHAIN E AND (RESID 2 THROUGH 49 OR REMARK 3 (RESID 50 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 51 REMARK 3 THROUGH 58 OR (RESID 59 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 60 OR (RESID 61 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 62 THROUGH 66 OR RESID 68 REMARK 3 THROUGH 94 OR (RESID 95 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 96 THROUGH 101 OR (RESID 102 REMARK 3 THROUGH 103 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 104 THROUGH 137 OR (RESID 138 THROUGH 139 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 140 THROUGH 186 REMARK 3 OR RESID 188 THROUGH 191 OR (RESID 192 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 193 THROUGH 194 REMARK 3 OR (RESID 195 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 196 THROUGH 202)) REMARK 3 ATOM PAIRS NUMBER : 1789 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BEJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : VARIMAX HF REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30880 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 27.982 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.601 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.35 REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2RCV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS TRIS PH 6.1, 25% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.33500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.83500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.23300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.83500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.33500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.23300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET E 1 REMARK 465 ALA E 203 REMARK 465 MET A 1 REMARK 465 ALA A 203 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS E 97 CG CD CE NZ REMARK 470 LYS E 106 CG CD CE NZ REMARK 470 LYS E 113 CG CD CE NZ REMARK 470 ASP A 50 CG OD1 OD2 REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 ASP A 138 CG OD1 OD2 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR E 136 OD1 ASP E 138 2.12 REMARK 500 O HOH A 418 O HOH A 496 2.14 REMARK 500 O HOH A 488 O HOH A 497 2.15 REMARK 500 O HOH A 492 O HOH A 513 2.16 REMARK 500 O HOH E 497 O HOH E 523 2.17 REMARK 500 O PRO E 17 NZ LYS E 173 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS E 30 -61.53 -109.64 REMARK 500 ASN E 148 -121.09 56.82 REMARK 500 TYR E 170 -3.97 -146.00 REMARK 500 GLN E 175 -124.58 46.08 REMARK 500 LYS A 30 -61.51 -107.85 REMARK 500 ASN A 148 -119.59 56.22 REMARK 500 TYR A 170 -2.20 -145.62 REMARK 500 GLN A 175 -123.67 47.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 571 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH E 572 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 532 DISTANCE = 6.40 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN E 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 27 NE2 REMARK 620 2 HIS E 81 NE2 90.1 REMARK 620 3 ASP E 164 OD2 89.2 106.2 REMARK 620 4 HIS E 168 NE2 96.1 141.6 111.7 REMARK 620 5 HOH E 411 O 87.8 71.1 176.0 71.4 REMARK 620 6 HOH E 453 O 171.9 92.3 82.7 86.8 100.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 27 NE2 REMARK 620 2 HIS A 81 NE2 91.5 REMARK 620 3 ASP A 164 OD2 88.8 105.1 REMARK 620 4 HIS A 168 NE2 91.5 144.8 110.0 REMARK 620 5 HOH A 448 O 169.8 86.6 82.1 95.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN E 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 DBREF1 6BEJ E 1 203 UNP A0A1V9H1W3_XANCI DBREF2 6BEJ E A0A1V9H1W3 1 203 DBREF1 6BEJ A 1 203 UNP A0A1V9H1W3_XANCI DBREF2 6BEJ A A0A1V9H1W3 1 203 SEQRES 1 E 203 MET ALA TYR THR LEU PRO GLN LEU PRO TYR ALA TYR ASP SEQRES 2 E 203 ALA LEU GLU PRO ASN ILE ASP ALA GLN THR MET GLU ILE SEQRES 3 E 203 HIS HIS THR LYS HIS HIS GLN THR TYR ILE ASN ASN VAL SEQRES 4 E 203 ASN ALA ALA LEU GLU GLY THR GLU TYR ALA ASP LEU PRO SEQRES 5 E 203 ILE GLU GLU LEU VAL SER LYS LEU LYS SER LEU PRO GLU SEQRES 6 E 203 ASN LEU GLN GLY PRO VAL ARG ASN ASN GLY GLY GLY HIS SEQRES 7 E 203 ALA ASN HIS SER LEU PHE TRP THR VAL LEU SER PRO ASN SEQRES 8 E 203 GLY GLY GLY GLU PRO LYS GLY GLU VAL ALA LYS ALA ILE SEQRES 9 E 203 ASP LYS ASP LEU GLY GLY PHE GLU LYS PHE LYS GLU ALA SEQRES 10 E 203 PHE THR LYS ALA ALA VAL SER ARG PHE GLY SER GLY TRP SEQRES 11 E 203 ALA TRP LEU SER VAL THR PRO ASP LYS LYS LEU VAL VAL SEQRES 12 E 203 GLU SER THR ALA ASN GLN ASP SER PRO LEU PHE GLU GLY SEQRES 13 E 203 ASN THR PRO ILE LEU GLY LEU ASP VAL TRP GLU HIS ALA SEQRES 14 E 203 TYR TYR LEU LYS TYR GLN ASN ARG ARG PRO GLU TYR ILE SEQRES 15 E 203 GLY ALA PHE TYR ASN ALA VAL ASN TRP GLU GLU VAL GLU SEQRES 16 E 203 ARG ARG TYR HIS ALA ALA ILE ALA SEQRES 1 A 203 MET ALA TYR THR LEU PRO GLN LEU PRO TYR ALA TYR ASP SEQRES 2 A 203 ALA LEU GLU PRO ASN ILE ASP ALA GLN THR MET GLU ILE SEQRES 3 A 203 HIS HIS THR LYS HIS HIS GLN THR TYR ILE ASN ASN VAL SEQRES 4 A 203 ASN ALA ALA LEU GLU GLY THR GLU TYR ALA ASP LEU PRO SEQRES 5 A 203 ILE GLU GLU LEU VAL SER LYS LEU LYS SER LEU PRO GLU SEQRES 6 A 203 ASN LEU GLN GLY PRO VAL ARG ASN ASN GLY GLY GLY HIS SEQRES 7 A 203 ALA ASN HIS SER LEU PHE TRP THR VAL LEU SER PRO ASN SEQRES 8 A 203 GLY GLY GLY GLU PRO LYS GLY GLU VAL ALA LYS ALA ILE SEQRES 9 A 203 ASP LYS ASP LEU GLY GLY PHE GLU LYS PHE LYS GLU ALA SEQRES 10 A 203 PHE THR LYS ALA ALA VAL SER ARG PHE GLY SER GLY TRP SEQRES 11 A 203 ALA TRP LEU SER VAL THR PRO ASP LYS LYS LEU VAL VAL SEQRES 12 A 203 GLU SER THR ALA ASN GLN ASP SER PRO LEU PHE GLU GLY SEQRES 13 A 203 ASN THR PRO ILE LEU GLY LEU ASP VAL TRP GLU HIS ALA SEQRES 14 A 203 TYR TYR LEU LYS TYR GLN ASN ARG ARG PRO GLU TYR ILE SEQRES 15 A 203 GLY ALA PHE TYR ASN ALA VAL ASN TRP GLU GLU VAL GLU SEQRES 16 A 203 ARG ARG TYR HIS ALA ALA ILE ALA HET MN E 301 1 HET MN A 301 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *304(H2 O) HELIX 1 AA1 ASP E 20 LYS E 30 1 11 HELIX 2 AA2 LYS E 30 GLU E 44 1 15 HELIX 3 AA3 PRO E 52 LYS E 59 1 8 HELIX 4 AA4 LEU E 60 LEU E 63 5 4 HELIX 5 AA5 PRO E 64 VAL E 87 1 24 HELIX 6 AA6 LYS E 97 GLY E 109 1 13 HELIX 7 AA7 GLY E 110 ARG E 125 1 16 HELIX 8 AA8 SER E 151 GLY E 156 5 6 HELIX 9 AA9 TRP E 166 ALA E 169 5 4 HELIX 10 AB1 TYR E 170 GLN E 175 1 6 HELIX 11 AB2 ARG E 177 VAL E 189 1 13 HELIX 12 AB3 ASN E 190 ILE E 202 1 13 HELIX 13 AB4 ASP A 20 LYS A 30 1 11 HELIX 14 AB5 LYS A 30 GLU A 44 1 15 HELIX 15 AB6 PRO A 52 LYS A 59 1 8 HELIX 16 AB7 LEU A 60 LEU A 63 5 4 HELIX 17 AB8 PRO A 64 VAL A 87 1 24 HELIX 18 AB9 LYS A 97 GLY A 109 1 13 HELIX 19 AC1 GLY A 110 ARG A 125 1 16 HELIX 20 AC2 SER A 151 GLY A 156 5 6 HELIX 21 AC3 TRP A 166 ALA A 169 5 4 HELIX 22 AC4 TYR A 170 GLN A 175 1 6 HELIX 23 AC5 ARG A 177 VAL A 189 1 13 HELIX 24 AC6 ASN A 190 ILE A 202 1 13 SHEET 1 AA1 3 LEU E 141 ALA E 147 0 SHEET 2 AA1 3 GLY E 129 VAL E 135 -1 N TRP E 132 O GLU E 144 SHEET 3 AA1 3 THR E 158 ASP E 164 -1 O THR E 158 N VAL E 135 SHEET 1 AA2 3 LEU A 141 ALA A 147 0 SHEET 2 AA2 3 GLY A 129 VAL A 135 -1 N TRP A 132 O GLU A 144 SHEET 3 AA2 3 THR A 158 ASP A 164 -1 O ILE A 160 N LEU A 133 LINK NE2 HIS E 27 MN MN E 301 1555 1555 2.08 LINK NE2 HIS E 81 MN MN E 301 1555 1555 2.13 LINK OD2 ASP E 164 MN MN E 301 1555 1555 2.04 LINK NE2 HIS E 168 MN MN E 301 1555 1555 2.17 LINK MN MN E 301 O HOH E 411 1555 1555 2.08 LINK MN MN E 301 O HOH E 453 1555 1555 2.09 LINK NE2 HIS A 27 MN MN A 301 1555 1555 2.09 LINK NE2 HIS A 81 MN MN A 301 1555 1555 2.09 LINK OD2 ASP A 164 MN MN A 301 1555 1555 2.02 LINK NE2 HIS A 168 MN MN A 301 1555 1555 2.09 LINK MN MN A 301 O HOH A 448 1555 1555 2.21 CISPEP 1 GLU E 16 PRO E 17 0 3.50 CISPEP 2 GLU A 16 PRO A 17 0 3.28 SITE 1 AC1 6 HIS E 27 HIS E 81 ASP E 164 HIS E 168 SITE 2 AC1 6 HOH E 411 HOH E 453 SITE 1 AC2 5 HIS A 27 HIS A 81 ASP A 164 HIS A 168 SITE 2 AC2 5 HOH A 448 CRYST1 60.670 72.466 87.670 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016483 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011406 0.00000