data_6BEN # _entry.id 6BEN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6BEN pdb_00006ben 10.2210/pdb6ben/pdb WWPDB D_1000230763 ? ? BMRB 30357 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution structure of de novo macrocycle design8.2' _pdbx_database_related.db_id 30357 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6BEN _pdbx_database_status.recvd_initial_deposition_date 2017-10-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Shortridge, M.D.' 1 0000-0003-2825-6836 'Hosseinzadeh, P.' 2 ? 'Pardo-Avila, F.' 3 ? 'Varani, G.' 4 ? 'Baker, B.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Science _citation.journal_id_ASTM SCIEAS _citation.journal_id_CSD 0038 _citation.journal_id_ISSN 1095-9203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 358 _citation.language ? _citation.page_first 1461 _citation.page_last 1466 _citation.title 'Comprehensive computational design of ordered peptide macrocycles.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/science.aap7577 _citation.pdbx_database_id_PubMed 29242347 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hosseinzadeh, P.' 1 ? primary 'Bhardwaj, G.' 2 ? primary 'Mulligan, V.K.' 3 ? primary 'Shortridge, M.D.' 4 ? primary 'Craven, T.W.' 5 ? primary 'Pardo-Avila, F.' 6 ? primary 'Rettie, S.A.' 7 ? primary 'Kim, D.E.' 8 ? primary 'Silva, D.A.' 9 ? primary 'Ibrahim, Y.M.' 10 ? primary 'Webb, I.K.' 11 ? primary 'Cort, J.R.' 12 ? primary 'Adkins, J.N.' 13 ? primary 'Varani, G.' 14 ? primary 'Baker, D.' 15 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description '(DAR)Q(DPR)(DGN)R(DGL)PQ' _entity.formula_weight 1040.133 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DAR)Q(DPR)(DGN)R(DGL)PQ' _entity_poly.pdbx_seq_one_letter_code_can RQPQREPQ _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DAR n 1 2 GLN n 1 3 DPR n 1 4 DGN n 1 5 ARG n 1 6 DGL n 1 7 PRO n 1 8 GLN n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6BEN _struct_ref.pdbx_db_accession 6BEN _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6BEN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6BEN _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 DAR 'D-peptide linking' . D-ARGININE ? 'C6 H15 N4 O2 1' 175.209 DGL 'D-peptide linking' . 'D-GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 DGN 'D-peptide linking' . D-GLUTAMINE ? 'C5 H10 N2 O3' 146.144 DPR 'D-peptide linking' . D-PROLINE ? 'C5 H9 N O2' 115.130 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H TOCSY' 1 isotropic 2 1 1 '2D 1H-1H NOESY' 1 isotropic 3 1 1 '2D 1H-15N HSQC' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 5.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units 'Not defined' _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '5 mg/mL Design8.2, 5 % [U-2H] glycerol, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label dsh_1 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 6BEN _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 6BEN _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6BEN _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement GROMACS 2016.1 Abraham 2 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 3 'chemical shift assignment' Sparky ? Goddard 4 'peak picking' Sparky ? Goddard # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6BEN _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6BEN _struct.title 'Solution structure of de novo macrocycle design8.2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6BEN _struct_keywords.text 'macrocycle, de novo, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DAR 1 C ? ? ? 1_555 A GLN 2 N ? ? A DAR 1 A GLN 2 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale2 covale both ? A DAR 1 N ? ? ? 1_555 A GLN 8 C ? ? A DAR 1 A GLN 8 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale3 covale both ? A GLN 2 C ? ? ? 1_555 A DPR 3 N ? ? A GLN 2 A DPR 3 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale4 covale both ? A DPR 3 C ? ? ? 1_555 A DGN 4 N ? ? A DPR 3 A DGN 4 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale5 covale both ? A DGN 4 C ? ? ? 1_555 A ARG 5 N ? ? A DGN 4 A ARG 5 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale6 covale both ? A ARG 5 C ? ? ? 1_555 A DGL 6 N ? ? A ARG 5 A DGL 6 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale7 covale both ? A DGL 6 C ? ? ? 1_555 A PRO 7 N ? ? A DGL 6 A PRO 7 1_555 ? ? ? ? ? ? ? 1.330 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6BEN _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DAR 1 1 1 DAR DAR A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 DPR 3 3 3 DPR DPR A . n A 1 4 DGN 4 4 4 DGN DGN A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 DGL 6 6 6 DGL DGU A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 GLN 8 8 8 GLN GLN A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 1040 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-12-27 2 'Structure model' 1 1 2020-01-01 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 2 'Structure model' pdbx_nmr_software 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 2 'Structure model' '_pdbx_nmr_software.name' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 6 3 'Structure model' '_struct_conn.pdbx_dist_value' 7 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 9 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 10 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 Design8.2 5 ? mg/mL 'natural abundance' 1 glycerol 5 ? % '[U-2H]' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 4 N A DAR 1 ? ? O A GLN 8 ? ? 2.17 2 6 N A DAR 1 ? ? O A GLN 8 ? ? 2.17 3 12 N A DAR 1 ? ? O A GLN 8 ? ? 2.15 4 15 N A DAR 1 ? ? O A GLN 8 ? ? 2.19 5 17 N A DAR 1 ? ? O A GLN 8 ? ? 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A DAR 1 ? ? CZ A DAR 1 ? ? NH1 A DAR 1 ? ? 116.04 120.30 -4.26 0.50 N 2 1 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH2 A ARG 5 ? ? 124.60 120.30 4.30 0.50 N 3 2 NE A DAR 1 ? ? CZ A DAR 1 ? ? NH1 A DAR 1 ? ? 125.61 120.30 5.31 0.50 N 4 3 NE A DAR 1 ? ? CZ A DAR 1 ? ? NH2 A DAR 1 ? ? 127.12 120.30 6.82 0.50 N 5 3 C A GLN 2 ? ? N A DPR 3 ? ? CA A DPR 3 ? ? 128.56 119.30 9.26 1.50 Y 6 3 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH2 A ARG 5 ? ? 126.15 120.30 5.85 0.50 N 7 4 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH1 A ARG 5 ? ? 123.62 120.30 3.32 0.50 N 8 5 NE A DAR 1 ? ? CZ A DAR 1 ? ? NH1 A DAR 1 ? ? 114.50 120.30 -5.80 0.50 N 9 5 OE1 A DGL 6 ? ? CD A DGL 6 ? ? OE2 A DGL 6 ? ? 114.07 123.30 -9.23 1.20 N 10 6 NE A DAR 1 ? ? CZ A DAR 1 ? ? NH2 A DAR 1 ? ? 126.04 120.30 5.74 0.50 N 11 6 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH1 A ARG 5 ? ? 114.47 120.30 -5.83 0.50 N 12 6 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH2 A ARG 5 ? ? 126.12 120.30 5.82 0.50 N 13 6 OE1 A DGL 6 ? ? CD A DGL 6 ? ? OE2 A DGL 6 ? ? 115.37 123.30 -7.93 1.20 N 14 7 NE A DAR 1 ? ? CZ A DAR 1 ? ? NH1 A DAR 1 ? ? 116.92 120.30 -3.38 0.50 N 15 7 NE A DAR 1 ? ? CZ A DAR 1 ? ? NH2 A DAR 1 ? ? 125.40 120.30 5.10 0.50 N 16 7 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH1 A ARG 5 ? ? 123.71 120.30 3.41 0.50 N 17 7 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH2 A ARG 5 ? ? 123.31 120.30 3.01 0.50 N 18 8 CD A DAR 1 ? ? NE A DAR 1 ? ? CZ A DAR 1 ? ? 133.05 123.60 9.45 1.40 N 19 8 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH1 A ARG 5 ? ? 112.22 120.30 -8.08 0.50 N 20 8 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH2 A ARG 5 ? ? 125.42 120.30 5.12 0.50 N 21 9 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH1 A ARG 5 ? ? 116.74 120.30 -3.56 0.50 N 22 9 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH2 A ARG 5 ? ? 125.34 120.30 5.04 0.50 N 23 10 NH1 A DAR 1 ? ? CZ A DAR 1 ? ? NH2 A DAR 1 ? ? 112.67 119.40 -6.73 1.10 N 24 10 NE A DAR 1 ? ? CZ A DAR 1 ? ? NH1 A DAR 1 ? ? 117.11 120.30 -3.19 0.50 N 25 10 NE A DAR 1 ? ? CZ A DAR 1 ? ? NH2 A DAR 1 ? ? 130.21 120.30 9.91 0.50 N 26 10 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH2 A ARG 5 ? ? 123.35 120.30 3.05 0.50 N 27 14 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH1 A ARG 5 ? ? 123.60 120.30 3.30 0.50 N 28 15 NE A DAR 1 ? ? CZ A DAR 1 ? ? NH2 A DAR 1 ? ? 123.92 120.30 3.62 0.50 N 29 15 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH2 A ARG 5 ? ? 126.17 120.30 5.87 0.50 N 30 16 NE A DAR 1 ? ? CZ A DAR 1 ? ? NH1 A DAR 1 ? ? 116.31 120.30 -3.99 0.50 N 31 17 NE A DAR 1 ? ? CZ A DAR 1 ? ? NH1 A DAR 1 ? ? 116.31 120.30 -3.99 0.50 N 32 17 NE A DAR 1 ? ? CZ A DAR 1 ? ? NH2 A DAR 1 ? ? 124.90 120.30 4.60 0.50 N 33 17 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH1 A ARG 5 ? ? 123.32 120.30 3.02 0.50 N 34 18 NH1 A DAR 1 ? ? CZ A DAR 1 ? ? NH2 A DAR 1 ? ? 106.74 119.40 -12.66 1.10 N 35 18 NE A DAR 1 ? ? CZ A DAR 1 ? ? NH1 A DAR 1 ? ? 128.09 120.30 7.79 0.50 N 36 18 NE A DAR 1 ? ? CZ A DAR 1 ? ? NH2 A DAR 1 ? ? 125.02 120.30 4.72 0.50 N 37 18 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH2 A ARG 5 ? ? 126.00 120.30 5.70 0.50 N 38 19 NE A DAR 1 ? ? CZ A DAR 1 ? ? NH1 A DAR 1 ? ? 117.15 120.30 -3.15 0.50 N 39 19 NH1 A ARG 5 ? ? CZ A ARG 5 ? ? NH2 A ARG 5 ? ? 112.08 119.40 -7.32 1.10 N 40 19 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH2 A ARG 5 ? ? 126.42 120.30 6.12 0.50 N 41 19 N A PRO 7 ? ? CD A PRO 7 ? ? CG A PRO 7 ? ? 112.70 103.20 9.50 1.50 N 42 20 NE A DAR 1 ? ? CZ A DAR 1 ? ? NH2 A DAR 1 ? ? 126.25 120.30 5.95 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 3 PRO A 7 ? ? -49.26 -16.61 2 5 ARG A 5 ? ? -114.53 70.92 3 5 DGL A 6 ? ? -37.06 -58.31 4 6 DGL A 6 ? ? -44.42 -73.41 5 9 DGL A 6 ? ? -38.68 -49.97 6 13 DGL A 6 ? ? -38.98 -56.44 7 15 DGL A 6 ? ? -36.51 -56.33 8 18 DGL A 6 ? ? -37.41 -75.60 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 16 _pdbx_validate_peptide_omega.auth_comp_id_1 GLN _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 2 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 DPR _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 3 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 136.71 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 4 ARG A 5 ? ? 0.116 'SIDE CHAIN' 2 9 ARG A 5 ? ? 0.089 'SIDE CHAIN' # _pdbx_audit_support.funding_organization 'Department of Health & Human Services (HHS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 5R01GM103834 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #