data_6BF3 # _entry.id 6BF3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6BF3 pdb_00006bf3 10.2210/pdb6bf3/pdb WWPDB D_1000230797 ? ? BMRB 30365 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution structure of de novo macrocycle design7.3a' _pdbx_database_related.db_id 30365 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6BF3 _pdbx_database_status.recvd_initial_deposition_date 2017-10-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Shortridge, M.D.' 1 0000-0003-2825-6836 'Hosseinzadeh, P.' 2 ? 'Pardo-Avila, F.' 3 ? 'Varani, G.' 4 ? 'Baker, D.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Science _citation.journal_id_ASTM SCIEAS _citation.journal_id_CSD 0038 _citation.journal_id_ISSN 1095-9203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 358 _citation.language ? _citation.page_first 1461 _citation.page_last 1466 _citation.title 'Comprehensive computational design of ordered peptide macrocycles.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/science.aap7577 _citation.pdbx_database_id_PubMed 29242347 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hosseinzadeh, P.' 1 ? primary 'Bhardwaj, G.' 2 ? primary 'Mulligan, V.K.' 3 ? primary 'Shortridge, M.D.' 4 ? primary 'Craven, T.W.' 5 ? primary 'Pardo-Avila, F.' 6 ? primary 'Rettie, S.A.' 7 ? primary 'Kim, D.E.' 8 ? primary 'Silva, D.A.' 9 ? primary 'Ibrahim, Y.M.' 10 ? primary 'Webb, I.K.' 11 ? primary 'Cort, J.R.' 12 ? primary 'Adkins, J.N.' 13 ? primary 'Varani, G.' 14 ? primary 'Baker, D.' 15 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'QDP(DPR)K(2TL)(DAS)' _entity.formula_weight 800.833 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'QDP(DPR)K(DTH)(DAS)' _entity_poly.pdbx_seq_one_letter_code_can QDPPKTD _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ASP n 1 3 PRO n 1 4 DPR n 1 5 LYS n 1 6 DTH n 1 7 DAS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 7 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6BF3 _struct_ref.pdbx_db_accession 6BF3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6BF3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 7 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6BF3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 7 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DAS 'D-peptide linking' . 'D-ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DPR 'D-peptide linking' . D-PROLINE ? 'C5 H9 N O2' 115.130 DTH 'D-peptide linking' . D-THREONINE ? 'C4 H9 N O3' 119.119 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H TOCSY' 1 isotropic 2 1 1 '2D 1H-1H NOESY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 5.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units 'Not defined' _pdbx_nmr_exptl_sample_conditions.label cond_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '5 mg/mL Design 7.3a, 5 % v/v [U-2H] glycerol, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label survivor1 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 6BF3 _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 6BF3 _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6BF3 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement GROMACS 2016.1 Abraham 2 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 3 'chemical shift assignment' Sparky ? Goddard 4 'peak picking' Sparky ? Goddard # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6BF3 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6BF3 _struct.title 'Solution structure of de novo macrocycle design7.3a' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6BF3 _struct_keywords.text 'macrocycle, de novo, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLN 1 N ? ? ? 1_555 A DAS 7 C ? ? A GLN 1 A DAS 7 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A PRO 3 C ? ? ? 1_555 A DPR 4 N ? ? A PRO 3 A DPR 4 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale3 covale both ? A DPR 4 C ? ? ? 1_555 A LYS 5 N ? ? A DPR 4 A LYS 5 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale4 covale both ? A LYS 5 C ? ? ? 1_555 A DTH 6 N ? ? A LYS 5 A DTH 6 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A DTH 6 C ? ? ? 1_555 A DAS 7 N ? ? A DTH 6 A DAS 7 1_555 ? ? ? ? ? ? ? 1.338 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6BF3 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _database_PDB_caveat.text 'DTH A 6 HAS WRONG CHIRALITY AT ATOM CB' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 1 GLN GLN A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 PRO 3 3 3 PRO PRO A . n A 1 4 DPR 4 4 4 DPR DPR A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 DTH 6 6 6 DTH DTH A . n A 1 7 DAS 7 7 7 DAS DAS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 870 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-01-10 2 'Structure model' 1 1 2020-01-01 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other 5 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 2 'Structure model' pdbx_nmr_software 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 2 'Structure model' '_pdbx_nmr_software.name' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'Design 7.3a' 5 ? mg/mL 'natural abundance' 1 glycerol 5 ? '% v/v' '[U-2H]' # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 5 _pdbx_validate_close_contact.auth_atom_id_1 N _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLN _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 DAS _pdbx_validate_close_contact.auth_seq_id_2 7 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A PRO 3 ? ? CA A PRO 3 ? ? CB A PRO 3 ? ? 110.82 103.30 7.52 1.20 N 2 6 CB A ASP 2 ? ? CG A ASP 2 ? ? OD2 A ASP 2 ? ? 126.31 118.30 8.01 0.90 N 3 7 CB A DAS 7 ? ? CG A DAS 7 ? ? OD2 A DAS 7 ? ? 112.58 118.30 -5.72 0.90 N 4 8 CB A ASP 2 ? ? CG A ASP 2 ? ? OD1 A ASP 2 ? ? 124.77 118.30 6.47 0.90 N 5 10 CB A DAS 7 ? ? CG A DAS 7 ? ? OD2 A DAS 7 ? ? 124.96 118.30 6.66 0.90 N 6 11 CB A ASP 2 ? ? CG A ASP 2 ? ? OD1 A ASP 2 ? ? 123.77 118.30 5.47 0.90 N 7 12 C A PRO 3 ? ? N A DPR 4 ? ? CA A DPR 4 ? ? 130.39 119.30 11.09 1.50 Y 8 14 O A DPR 4 ? ? C A DPR 4 ? ? N A LYS 5 ? ? 112.46 122.70 -10.24 1.60 Y 9 18 CB A ASP 2 ? ? CG A ASP 2 ? ? OD2 A ASP 2 ? ? 124.84 118.30 6.54 0.90 N 10 20 N A PRO 3 ? ? CA A PRO 3 ? ? CB A PRO 3 ? ? 110.91 103.30 7.61 1.20 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 DPR A 4 ? ? 62.76 -6.32 2 4 PRO A 3 ? ? -36.49 114.45 3 4 LYS A 5 ? ? -144.39 -15.90 4 5 DPR A 4 ? ? 57.43 9.75 5 8 DPR A 4 ? ? 60.04 -1.09 6 12 DPR A 4 ? ? 64.30 -4.55 7 13 DPR A 4 ? ? 61.54 -6.31 8 14 ASP A 2 ? ? -157.38 81.93 9 18 PRO A 3 ? ? -58.11 106.17 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ASP A 2 ? ? PRO A 3 ? ? -149.08 2 19 LYS A 5 ? ? DTH A 6 ? ? 144.08 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 19 _pdbx_validate_main_chain_plane.auth_comp_id LYS _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 5 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -13.20 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 CB ? A DTH 6 ? 'WRONG HAND' . 2 2 CB ? A DTH 6 ? 'WRONG HAND' . 3 3 CB ? A DTH 6 ? 'WRONG HAND' . 4 4 CB ? A DTH 6 ? 'WRONG HAND' . 5 5 CB ? A DTH 6 ? 'WRONG HAND' . 6 6 CB ? A DTH 6 ? 'WRONG HAND' . 7 7 CB ? A DTH 6 ? 'WRONG HAND' . 8 8 CB ? A DTH 6 ? 'WRONG HAND' . 9 9 CB ? A DTH 6 ? 'WRONG HAND' . 10 10 CB ? A DTH 6 ? 'WRONG HAND' . 11 11 CB ? A DTH 6 ? 'WRONG HAND' . 12 12 CB ? A DTH 6 ? 'WRONG HAND' . 13 13 CB ? A DTH 6 ? 'WRONG HAND' . 14 14 CB ? A DTH 6 ? 'WRONG HAND' . 15 15 CB ? A DTH 6 ? 'WRONG HAND' . 16 16 CB ? A DTH 6 ? 'WRONG HAND' . 17 17 CB ? A DTH 6 ? 'WRONG HAND' . 18 18 CB ? A DTH 6 ? 'WRONG HAND' . 19 19 CB ? A DTH 6 ? 'WRONG HAND' . 20 20 CB ? A DTH 6 ? 'WRONG HAND' . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASP N N N N 1 ASP CA C N S 2 ASP C C N N 3 ASP O O N N 4 ASP CB C N N 5 ASP CG C N N 6 ASP OD1 O N N 7 ASP OD2 O N N 8 ASP OXT O N N 9 ASP H H N N 10 ASP H2 H N N 11 ASP HA H N N 12 ASP HB2 H N N 13 ASP HB3 H N N 14 ASP HD2 H N N 15 ASP HXT H N N 16 DAS N N N N 17 DAS CA C N R 18 DAS C C N N 19 DAS O O N N 20 DAS CB C N N 21 DAS CG C N N 22 DAS OD1 O N N 23 DAS OD2 O N N 24 DAS OXT O N N 25 DAS H H N N 26 DAS H2 H N N 27 DAS HA H N N 28 DAS HB2 H N N 29 DAS HB3 H N N 30 DAS HD2 H N N 31 DAS HXT H N N 32 DPR N N N N 33 DPR CA C N R 34 DPR CB C N N 35 DPR CG C N N 36 DPR CD C N N 37 DPR C C N N 38 DPR O O N N 39 DPR OXT O N N 40 DPR H H N N 41 DPR HA H N N 42 DPR HB2 H N N 43 DPR HB3 H N N 44 DPR HG2 H N N 45 DPR HG3 H N N 46 DPR HD2 H N N 47 DPR HD3 H N N 48 DPR HXT H N N 49 DTH N N N N 50 DTH CA C N R 51 DTH CB C N S 52 DTH CG2 C N N 53 DTH OG1 O N N 54 DTH C C N N 55 DTH O O N N 56 DTH OXT O N N 57 DTH H H N N 58 DTH H2 H N N 59 DTH HA H N N 60 DTH HB H N N 61 DTH HG21 H N N 62 DTH HG22 H N N 63 DTH HG23 H N N 64 DTH HG1 H N N 65 DTH HXT H N N 66 GLN N N N N 67 GLN CA C N S 68 GLN C C N N 69 GLN O O N N 70 GLN CB C N N 71 GLN CG C N N 72 GLN CD C N N 73 GLN OE1 O N N 74 GLN NE2 N N N 75 GLN OXT O N N 76 GLN H H N N 77 GLN H2 H N N 78 GLN HA H N N 79 GLN HB2 H N N 80 GLN HB3 H N N 81 GLN HG2 H N N 82 GLN HG3 H N N 83 GLN HE21 H N N 84 GLN HE22 H N N 85 GLN HXT H N N 86 LYS N N N N 87 LYS CA C N S 88 LYS C C N N 89 LYS O O N N 90 LYS CB C N N 91 LYS CG C N N 92 LYS CD C N N 93 LYS CE C N N 94 LYS NZ N N N 95 LYS OXT O N N 96 LYS H H N N 97 LYS H2 H N N 98 LYS HA H N N 99 LYS HB2 H N N 100 LYS HB3 H N N 101 LYS HG2 H N N 102 LYS HG3 H N N 103 LYS HD2 H N N 104 LYS HD3 H N N 105 LYS HE2 H N N 106 LYS HE3 H N N 107 LYS HZ1 H N N 108 LYS HZ2 H N N 109 LYS HZ3 H N N 110 LYS HXT H N N 111 PRO N N N N 112 PRO CA C N S 113 PRO C C N N 114 PRO O O N N 115 PRO CB C N N 116 PRO CG C N N 117 PRO CD C N N 118 PRO OXT O N N 119 PRO H H N N 120 PRO HA H N N 121 PRO HB2 H N N 122 PRO HB3 H N N 123 PRO HG2 H N N 124 PRO HG3 H N N 125 PRO HD2 H N N 126 PRO HD3 H N N 127 PRO HXT H N N 128 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP N CA sing N N 1 ASP N H sing N N 2 ASP N H2 sing N N 3 ASP CA C sing N N 4 ASP CA CB sing N N 5 ASP CA HA sing N N 6 ASP C O doub N N 7 ASP C OXT sing N N 8 ASP CB CG sing N N 9 ASP CB HB2 sing N N 10 ASP CB HB3 sing N N 11 ASP CG OD1 doub N N 12 ASP CG OD2 sing N N 13 ASP OD2 HD2 sing N N 14 ASP OXT HXT sing N N 15 DAS N CA sing N N 16 DAS N H sing N N 17 DAS N H2 sing N N 18 DAS CA C sing N N 19 DAS CA CB sing N N 20 DAS CA HA sing N N 21 DAS C O doub N N 22 DAS C OXT sing N N 23 DAS CB CG sing N N 24 DAS CB HB2 sing N N 25 DAS CB HB3 sing N N 26 DAS CG OD1 doub N N 27 DAS CG OD2 sing N N 28 DAS OD2 HD2 sing N N 29 DAS OXT HXT sing N N 30 DPR N CA sing N N 31 DPR N CD sing N N 32 DPR N H sing N N 33 DPR CA CB sing N N 34 DPR CA C sing N N 35 DPR CA HA sing N N 36 DPR CB CG sing N N 37 DPR CB HB2 sing N N 38 DPR CB HB3 sing N N 39 DPR CG CD sing N N 40 DPR CG HG2 sing N N 41 DPR CG HG3 sing N N 42 DPR CD HD2 sing N N 43 DPR CD HD3 sing N N 44 DPR C O doub N N 45 DPR C OXT sing N N 46 DPR OXT HXT sing N N 47 DTH N CA sing N N 48 DTH N H sing N N 49 DTH N H2 sing N N 50 DTH CA CB sing N N 51 DTH CA C sing N N 52 DTH CA HA sing N N 53 DTH CB CG2 sing N N 54 DTH CB OG1 sing N N 55 DTH CB HB sing N N 56 DTH CG2 HG21 sing N N 57 DTH CG2 HG22 sing N N 58 DTH CG2 HG23 sing N N 59 DTH OG1 HG1 sing N N 60 DTH C O doub N N 61 DTH C OXT sing N N 62 DTH OXT HXT sing N N 63 GLN N CA sing N N 64 GLN N H sing N N 65 GLN N H2 sing N N 66 GLN CA C sing N N 67 GLN CA CB sing N N 68 GLN CA HA sing N N 69 GLN C O doub N N 70 GLN C OXT sing N N 71 GLN CB CG sing N N 72 GLN CB HB2 sing N N 73 GLN CB HB3 sing N N 74 GLN CG CD sing N N 75 GLN CG HG2 sing N N 76 GLN CG HG3 sing N N 77 GLN CD OE1 doub N N 78 GLN CD NE2 sing N N 79 GLN NE2 HE21 sing N N 80 GLN NE2 HE22 sing N N 81 GLN OXT HXT sing N N 82 LYS N CA sing N N 83 LYS N H sing N N 84 LYS N H2 sing N N 85 LYS CA C sing N N 86 LYS CA CB sing N N 87 LYS CA HA sing N N 88 LYS C O doub N N 89 LYS C OXT sing N N 90 LYS CB CG sing N N 91 LYS CB HB2 sing N N 92 LYS CB HB3 sing N N 93 LYS CG CD sing N N 94 LYS CG HG2 sing N N 95 LYS CG HG3 sing N N 96 LYS CD CE sing N N 97 LYS CD HD2 sing N N 98 LYS CD HD3 sing N N 99 LYS CE NZ sing N N 100 LYS CE HE2 sing N N 101 LYS CE HE3 sing N N 102 LYS NZ HZ1 sing N N 103 LYS NZ HZ2 sing N N 104 LYS NZ HZ3 sing N N 105 LYS OXT HXT sing N N 106 PRO N CA sing N N 107 PRO N CD sing N N 108 PRO N H sing N N 109 PRO CA C sing N N 110 PRO CA CB sing N N 111 PRO CA HA sing N N 112 PRO C O doub N N 113 PRO C OXT sing N N 114 PRO CB CG sing N N 115 PRO CB HB2 sing N N 116 PRO CB HB3 sing N N 117 PRO CG CD sing N N 118 PRO CG HG2 sing N N 119 PRO CG HG3 sing N N 120 PRO CD HD2 sing N N 121 PRO CD HD3 sing N N 122 PRO OXT HXT sing N N 123 # _pdbx_audit_support.funding_organization 'Department of Health & Human Services (HHS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 5R01GM103834 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #