HEADER TRANSFERASE/TRANSFERASE INHIBITOR 26-OCT-17 6BFA TITLE CALCIUM-DEPENDENT PROTEIN KINASE 1 FROM TOXOPLASMA GONDII (TGCDPK1) IN TITLE 2 COMPLEX WITH INHIBITOR UW1553 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-DOMAIN PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 30-507; COMPND 5 SYNONYM: TGCDPK1; COMPND 6 EC: 2.7.11.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: CDPK1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS BUMPED KINASE INHIBITOR, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.A.MERRITT REVDAT 4 03-APR-24 6BFA 1 REMARK REVDAT 3 13-MAR-24 6BFA 1 REMARK REVDAT 2 11-DEC-19 6BFA 1 REMARK REVDAT 1 06-DEC-17 6BFA 0 JRNL AUTH R.S.VIDADALA,K.L.RIVAS,K.K.OJO,M.A.HULVERSON,J.A.ZAMBRISKI, JRNL AUTH 2 I.BRUZUAL,T.L.SCHULTZ,W.HUANG,Z.ZHANG,S.SCHEELE, JRNL AUTH 3 A.E.DEROCHER,R.CHOI,L.K.BARRETT,L.K.SIDDARAMAIAH,W.G.HOL, JRNL AUTH 4 E.FAN,E.A.MERRITT,M.PARSONS,G.FREIBERG,K.MARSH,D.J.KEMPF, JRNL AUTH 5 V.B.CARRUTHERS,N.ISOHERRANEN,J.S.DOGGETT,W.C.VAN VOORHIS, JRNL AUTH 6 D.J.MALY JRNL TITL DEVELOPMENT OF AN ORALLY AVAILABLE AND CENTRAL NERVOUS JRNL TITL 2 SYSTEM (CNS) PENETRANT TOXOPLASMA GONDII CALCIUM-DEPENDENT JRNL TITL 3 PROTEIN KINASE 1 (TGCDPK1) INHIBITOR WITH MINIMAL HUMAN JRNL TITL 4 ETHER-A-GO-GO-RELATED GENE (HERG) ACTIVITY FOR THE TREATMENT JRNL TITL 5 OF TOXOPLASMOSIS. JRNL REF J. MED. CHEM. V. 59 6531 2016 JRNL REFN ISSN 1520-4804 JRNL PMID 27309760 JRNL DOI 10.1021/ACS.JMEDCHEM.6B00760 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.T.LARSON,K.K.OJO,R.C.MURPHY,S.M.JOHNSON,Z.ZHANG,J.E.KIM, REMARK 1 AUTH 2 D.J.LEIBLY,A.M.FOX,M.C.REID,E.J.DALE,B.G.PERERA,J.KIM, REMARK 1 AUTH 3 S.N.HEWITT,W.G.HOL,C.L.VERLINDE,E.FAN,W.C.VAN VOORHIS, REMARK 1 AUTH 4 D.J.MALY,E.A.MERRITT REMARK 1 TITL MULTIPLE DETERMINANTS FOR SELECTIVE INHIBITION OF REMARK 1 TITL 2 APICOMPLEXAN CALCIUM-DEPENDENT PROTEIN KINASE CDPK1. REMARK 1 REF J. MED. CHEM. V. 55 2803 2012 REMARK 1 REFN ISSN 1520-4804 REMARK 1 PMID 22369268 REMARK 1 DOI 10.1021/JM201725V REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 9459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 475 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3708 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.50000 REMARK 3 B22 (A**2) : -0.76000 REMARK 3 B33 (A**2) : 3.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.000 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.478 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.434 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 48.320 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6410 -21.4740 -40.0560 REMARK 3 T TENSOR REMARK 3 T11: 0.1384 T22: 0.0699 REMARK 3 T33: 0.1574 T12: 0.0106 REMARK 3 T13: -0.1334 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 4.4501 L22: 6.6330 REMARK 3 L33: 2.4499 L12: 2.7537 REMARK 3 L13: -0.1624 L23: 1.8304 REMARK 3 S TENSOR REMARK 3 S11: -0.2737 S12: -0.2733 S13: 0.2825 REMARK 3 S21: -0.8094 S22: -0.0820 S23: 0.6271 REMARK 3 S31: -0.4324 S32: -0.1747 S33: 0.3557 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9070 -24.0020 -24.5920 REMARK 3 T TENSOR REMARK 3 T11: 0.0392 T22: 0.1169 REMARK 3 T33: 0.2527 T12: 0.0002 REMARK 3 T13: -0.0924 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.9576 L22: 0.9005 REMARK 3 L33: 3.7746 L12: 0.4704 REMARK 3 L13: -0.8411 L23: -0.0670 REMARK 3 S TENSOR REMARK 3 S11: 0.0523 S12: -0.0551 S13: -0.1280 REMARK 3 S21: -0.0217 S22: -0.1943 S23: 0.0634 REMARK 3 S31: 0.0659 S32: -0.2101 S33: 0.1420 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 212 A 313 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7370 -16.1000 -8.3770 REMARK 3 T TENSOR REMARK 3 T11: 0.0904 T22: 0.1914 REMARK 3 T33: 0.1333 T12: -0.0230 REMARK 3 T13: -0.0724 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 2.6402 L22: 3.1571 REMARK 3 L33: 1.5591 L12: 0.4509 REMARK 3 L13: -0.3234 L23: -0.1070 REMARK 3 S TENSOR REMARK 3 S11: 0.0067 S12: -0.1128 S13: 0.0406 REMARK 3 S21: 0.3327 S22: -0.1377 S23: -0.1456 REMARK 3 S31: 0.1341 S32: -0.1589 S33: 0.1310 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 314 A 320 REMARK 3 ORIGIN FOR THE GROUP (A): -2.6270 -36.8330 0.0600 REMARK 3 T TENSOR REMARK 3 T11: 0.4675 T22: 0.4441 REMARK 3 T33: 0.5105 T12: 0.0315 REMARK 3 T13: 0.1712 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 12.8279 L22: 0.8260 REMARK 3 L33: 6.5913 L12: 3.2349 REMARK 3 L13: 9.1921 L23: 2.3137 REMARK 3 S TENSOR REMARK 3 S11: 1.1213 S12: 0.0507 S13: -1.3428 REMARK 3 S21: 0.3163 S22: -0.0828 S23: -0.3127 REMARK 3 S31: 0.8035 S32: 0.0451 S33: -1.0384 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 321 A 383 REMARK 3 ORIGIN FOR THE GROUP (A): -11.5440 -7.4310 -36.7190 REMARK 3 T TENSOR REMARK 3 T11: 0.2807 T22: 0.2423 REMARK 3 T33: 0.2525 T12: -0.0321 REMARK 3 T13: -0.1167 T23: -0.0433 REMARK 3 L TENSOR REMARK 3 L11: 0.7081 L22: 0.6985 REMARK 3 L33: 5.2010 L12: -0.5040 REMARK 3 L13: 0.8138 L23: -1.5313 REMARK 3 S TENSOR REMARK 3 S11: -0.0670 S12: -0.1413 S13: 0.1577 REMARK 3 S21: -0.2153 S22: 0.0589 S23: -0.0317 REMARK 3 S31: 0.5498 S32: -0.4285 S33: 0.0081 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 384 A 432 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0750 -11.3960 -51.4750 REMARK 3 T TENSOR REMARK 3 T11: 0.3815 T22: 0.1338 REMARK 3 T33: 0.1735 T12: -0.0694 REMARK 3 T13: -0.1686 T23: 0.0291 REMARK 3 L TENSOR REMARK 3 L11: 9.9117 L22: 2.3766 REMARK 3 L33: 7.5444 L12: -2.1177 REMARK 3 L13: 3.4668 L23: 1.3377 REMARK 3 S TENSOR REMARK 3 S11: 0.4917 S12: 0.1302 S13: -0.3131 REMARK 3 S21: -0.5013 S22: -0.0340 S23: -0.1099 REMARK 3 S31: -0.1774 S32: 0.5255 S33: -0.4577 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 433 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): -16.7540 -0.7530 -22.8710 REMARK 3 T TENSOR REMARK 3 T11: 0.0603 T22: 0.1609 REMARK 3 T33: 0.2756 T12: -0.0107 REMARK 3 T13: -0.0843 T23: -0.0904 REMARK 3 L TENSOR REMARK 3 L11: 4.6003 L22: 1.3078 REMARK 3 L33: 3.2762 L12: 1.5493 REMARK 3 L13: -2.2897 L23: -1.7509 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: -0.1081 S13: 0.2729 REMARK 3 S21: -0.0255 S22: 0.2152 S23: 0.0258 REMARK 3 S31: -0.0539 S32: -0.1496 S33: -0.2314 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 4 REMARK 4 6BFA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97944 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10998 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 36.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.29600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 2.32500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: IN-HOUSE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG3350, 0.275 M AMMONIUM CITRATE, REMARK 280 5 MM DTT, 2 MM UW1533, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.32750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 PRO A 25 REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 MET A 28 REMARK 465 MET A 29 REMARK 465 ASP A 30 REMARK 465 HIS A 31 REMARK 465 LEU A 32 REMARK 465 HIS A 33 REMARK 465 ALA A 34 REMARK 465 THR A 35 REMARK 465 PRO A 36 REMARK 465 GLY A 37 REMARK 465 MET A 38 REMARK 465 PHE A 39 REMARK 465 VAL A 40 REMARK 465 GLN A 41 REMARK 465 HIS A 42 REMARK 465 SER A 43 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 LYS A 266 CD CE NZ REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 LYS A 391 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 481 O HOH A 701 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 98 OE2 GLU A 483 2544 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 145 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 62 -13.70 73.98 REMARK 500 ARG A 173 -32.27 84.17 REMARK 500 LEU A 289 30.04 -93.96 REMARK 500 GLU A 314 -19.91 -49.85 REMARK 500 MET A 397 62.95 -100.81 REMARK 500 VAL A 414 27.83 -68.96 REMARK 500 ASP A 415 -105.82 43.03 REMARK 500 ARG A 434 -85.19 -91.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UW5 A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ONA RELATED DB: PDB REMARK 900 RELATED ID: 4TZR RELATED DB: PDB REMARK 900 RELATED ID: 4WG5 RELATED DB: PDB DBREF 6BFA A 30 507 UNP Q9BJF5 Q9BJF5_TOXGO 30 507 SEQADV 6BFA GLY A 24 UNP Q9BJF5 EXPRESSION TAG SEQADV 6BFA PRO A 25 UNP Q9BJF5 EXPRESSION TAG SEQADV 6BFA GLY A 26 UNP Q9BJF5 EXPRESSION TAG SEQADV 6BFA SER A 27 UNP Q9BJF5 EXPRESSION TAG SEQADV 6BFA MET A 28 UNP Q9BJF5 EXPRESSION TAG SEQADV 6BFA MET A 29 UNP Q9BJF5 EXPRESSION TAG SEQRES 1 A 484 GLY PRO GLY SER MET MET ASP HIS LEU HIS ALA THR PRO SEQRES 2 A 484 GLY MET PHE VAL GLN HIS SER THR ALA ILE PHE SER ASP SEQRES 3 A 484 ARG TYR LYS GLY GLN ARG VAL LEU GLY LYS GLY SER PHE SEQRES 4 A 484 GLY GLU VAL ILE LEU CYS LYS ASP LYS ILE THR GLY GLN SEQRES 5 A 484 GLU CYS ALA VAL LYS VAL ILE SER LYS ARG GLN VAL LYS SEQRES 6 A 484 GLN LYS THR ASP LYS GLU SER LEU LEU ARG GLU VAL GLN SEQRES 7 A 484 LEU LEU LYS GLN LEU ASP HIS PRO ASN ILE MET LYS LEU SEQRES 8 A 484 TYR GLU PHE PHE GLU ASP LYS GLY TYR PHE TYR LEU VAL SEQRES 9 A 484 GLY GLU VAL TYR THR GLY GLY GLU LEU PHE ASP GLU ILE SEQRES 10 A 484 ILE SER ARG LYS ARG PHE SER GLU VAL ASP ALA ALA ARG SEQRES 11 A 484 ILE ILE ARG GLN VAL LEU SER GLY ILE THR TYR MET HIS SEQRES 12 A 484 LYS ASN LYS ILE VAL HIS ARG ASP LEU LYS PRO GLU ASN SEQRES 13 A 484 LEU LEU LEU GLU SER LYS SER LYS ASP ALA ASN ILE ARG SEQRES 14 A 484 ILE ILE ASP PHE GLY LEU SER THR HIS PHE GLU ALA SER SEQRES 15 A 484 LYS LYS MET LYS ASP LYS ILE GLY THR ALA TYR TYR ILE SEQRES 16 A 484 ALA PRO GLU VAL LEU HIS GLY THR TYR ASP GLU LYS CYS SEQRES 17 A 484 ASP VAL TRP SER THR GLY VAL ILE LEU TYR ILE LEU LEU SEQRES 18 A 484 SER GLY CYS PRO PRO PHE ASN GLY ALA ASN GLU TYR ASP SEQRES 19 A 484 ILE LEU LYS LYS VAL GLU LYS GLY LYS TYR THR PHE GLU SEQRES 20 A 484 LEU PRO GLN TRP LYS LYS VAL SER GLU SER ALA LYS ASP SEQRES 21 A 484 LEU ILE ARG LYS MET LEU THR TYR VAL PRO SER MET ARG SEQRES 22 A 484 ILE SER ALA ARG ASP ALA LEU ASP HIS GLU TRP ILE GLN SEQRES 23 A 484 THR TYR THR LYS GLU GLN ILE SER VAL ASP VAL PRO SER SEQRES 24 A 484 LEU ASP ASN ALA ILE LEU ASN ILE ARG GLN PHE GLN GLY SEQRES 25 A 484 THR GLN LYS LEU ALA GLN ALA ALA LEU LEU TYR MET GLY SEQRES 26 A 484 SER LYS LEU THR SER GLN ASP GLU THR LYS GLU LEU THR SEQRES 27 A 484 ALA ILE PHE HIS LYS MET ASP LYS ASN GLY ASP GLY GLN SEQRES 28 A 484 LEU ASP ARG ALA GLU LEU ILE GLU GLY TYR LYS GLU LEU SEQRES 29 A 484 MET ARG MET LYS GLY GLN ASP ALA SER MET LEU ASP ALA SEQRES 30 A 484 SER ALA VAL GLU HIS GLU VAL ASP GLN VAL LEU ASP ALA SEQRES 31 A 484 VAL ASP PHE ASP LYS ASN GLY TYR ILE GLU TYR SER GLU SEQRES 32 A 484 PHE VAL THR VAL ALA MET ASP ARG LYS THR LEU LEU SER SEQRES 33 A 484 ARG GLU ARG LEU GLU ARG ALA PHE ARG MET PHE ASP SER SEQRES 34 A 484 ASP ASN SER GLY LYS ILE SER SER THR GLU LEU ALA THR SEQRES 35 A 484 ILE PHE GLY VAL SER ASP VAL ASP SER GLU THR TRP LYS SEQRES 36 A 484 SER VAL LEU SER GLU VAL ASP LYS ASN ASN ASP GLY GLU SEQRES 37 A 484 VAL ASP PHE ASP GLU PHE GLN GLN MET LEU LEU LYS LEU SEQRES 38 A 484 CYS GLY ASN HET UW5 A 601 29 HETNAM UW5 1-{4-AMINO-3-[6-(CYCLOPROPYLOXY)NAPHTHALEN-2-YL]-1H- HETNAM 2 UW5 PYRAZOLO[3,4-D]PYRIMIDIN-1-YL}-2-METHYLPROPAN-2-OL HETSYN UW5 UW1553 FORMUL 2 UW5 C22 H23 N5 O2 FORMUL 3 HOH *87(H2 O) HELIX 1 AA1 ILE A 46 ARG A 50 1 5 HELIX 2 AA2 ASP A 92 LYS A 104 1 13 HELIX 3 AA3 GLU A 135 ILE A 141 1 7 HELIX 4 AA4 SER A 147 ASN A 168 1 22 HELIX 5 AA5 LYS A 176 GLU A 178 5 3 HELIX 6 AA6 GLY A 197 HIS A 201 5 5 HELIX 7 AA7 LYS A 207 ILE A 212 1 6 HELIX 8 AA8 ALA A 219 GLY A 225 1 7 HELIX 9 AA9 GLU A 229 GLY A 246 1 18 HELIX 10 AB1 ASN A 254 GLY A 265 1 12 HELIX 11 AB2 LEU A 271 LYS A 275 5 5 HELIX 12 AB3 SER A 278 LEU A 289 1 12 HELIX 13 AB4 VAL A 292 ARG A 296 5 5 HELIX 14 AB5 SER A 298 ASP A 304 1 7 HELIX 15 AB6 HIS A 305 THR A 312 1 8 HELIX 16 AB7 LEU A 323 ASP A 368 1 46 HELIX 17 AB8 ASP A 376 GLY A 392 1 17 HELIX 18 AB9 ASP A 399 VAL A 414 1 16 HELIX 19 AC1 TYR A 424 ASP A 433 1 10 HELIX 20 AC2 ARG A 434 ASP A 451 1 18 HELIX 21 AC3 SER A 460 SER A 470 1 11 HELIX 22 AC4 ASP A 473 ASP A 485 1 13 HELIX 23 AC5 PHE A 494 LEU A 504 1 11 SHEET 1 AA1 5 TYR A 51 GLY A 60 0 SHEET 2 AA1 5 GLY A 63 ASP A 70 -1 O VAL A 65 N GLY A 58 SHEET 3 AA1 5 GLU A 76 SER A 83 -1 O CYS A 77 N CYS A 68 SHEET 4 AA1 5 TYR A 123 GLY A 128 -1 O PHE A 124 N ILE A 82 SHEET 5 AA1 5 LEU A 114 GLU A 119 -1 N TYR A 115 O VAL A 127 SHEET 1 AA2 2 LEU A 180 LEU A 182 0 SHEET 2 AA2 2 ILE A 191 ILE A 193 -1 O ARG A 192 N LEU A 181 SHEET 1 AA3 2 GLN A 374 LEU A 375 0 SHEET 2 AA3 2 ILE A 422 GLU A 423 -1 O ILE A 422 N LEU A 375 SHEET 1 AA4 2 LYS A 457 SER A 459 0 SHEET 2 AA4 2 GLU A 491 ASP A 493 -1 O VAL A 492 N ILE A 458 SITE 1 AC1 13 LEU A 57 GLY A 58 LYS A 59 VAL A 65 SITE 2 AC1 13 ALA A 78 LYS A 80 MET A 112 LEU A 126 SITE 3 AC1 13 GLU A 129 TYR A 131 ILE A 194 ASP A 195 SITE 4 AC1 13 HOH A 749 CRYST1 48.124 72.655 65.746 90.00 99.78 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020780 0.000000 0.003583 0.00000 SCALE2 0.000000 0.013764 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015435 0.00000