data_6BFB # _entry.id 6BFB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6BFB pdb_00006bfb 10.2210/pdb6bfb/pdb WWPDB D_1000230807 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-02-21 2 'Structure model' 1 1 2018-03-28 3 'Structure model' 1 2 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' 5 3 'Structure model' '_database_2.pdbx_DOI' 6 3 'Structure model' '_database_2.pdbx_database_accession' 7 3 'Structure model' '_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6BFB _pdbx_database_status.recvd_initial_deposition_date 2017-10-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Rizvi, N.F.' 1 ? 'Fischmann, T.O.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'ACS Chem. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1554-8937 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 13 _citation.language ? _citation.page_first 820 _citation.page_last 831 _citation.title 'Discovery of Selective RNA-Binding Small Molecules by Affinity-Selection Mass Spectrometry.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acschembio.7b01013 _citation.pdbx_database_id_PubMed 29412640 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rizvi, N.F.' 1 ? primary 'Howe, J.A.' 2 ? primary 'Nahvi, A.' 3 ? primary 'Klein, D.J.' 4 ? primary 'Fischmann, T.O.' 5 ? primary 'Kim, H.Y.' 6 ? primary 'McCoy, M.A.' 7 ? primary 'Walker, S.S.' 8 ? primary 'Hruza, A.' 9 ? primary 'Richards, M.P.' 10 ? primary 'Chamberlin, C.' 11 ? primary 'Saradjian, P.' 12 ? primary 'Butko, M.T.' 13 ? primary 'Mercado, G.' 14 ? primary 'Burchard, J.' 15 ? primary 'Strickland, C.' 16 ? primary 'Dandliker, P.J.' 17 ? primary 'Smith, G.F.' 18 ? primary 'Nickbarg, E.B.' 19 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (54-MER)' 17455.389 1 ? ? ? ? 2 polymer syn 'RNA (56-MER)' 18092.771 1 ? ? ? ? 3 non-polymer syn ;5-[(3S,4S)-3-(dimethylamino)-4-hydroxypyrrolidin-1-yl]-6-fluoro-4-methyl-8-oxo-3,4-dihydro-8H-1-thia-4,9b-diazacyclopenta[cd]phenalene-9-carboxylic acid ; 432.469 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 12 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGCUU GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGCUU X ? 2 polyribonucleotide no no GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC Y ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 ;5-[(3S,4S)-3-(dimethylamino)-4-hydroxypyrrolidin-1-yl]-6-fluoro-4-methyl-8-oxo-3,4-dihydro-8H-1-thia-4,9b-diazacyclopenta[cd]phenalene-9-carboxylic acid ; DKM 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 U n 1 5 C n 1 6 U n 1 7 U n 1 8 C n 1 9 G n 1 10 G n 1 11 G n 1 12 G n 1 13 C n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 U n 1 19 G n 1 20 A n 1 21 A n 1 22 A n 1 23 U n 1 24 U n 1 25 C n 1 26 C n 1 27 C n 1 28 G n 1 29 A n 1 30 C n 1 31 C n 1 32 G n 1 33 G n 1 34 U n 1 35 G n 1 36 G n 1 37 U n 1 38 A n 1 39 U n 1 40 A n 1 41 G n 1 42 U n 1 43 C n 1 44 C n 1 45 A n 1 46 C n 1 47 G n 1 48 A n 1 49 A n 1 50 A n 1 51 G n 1 52 C n 1 53 U n 1 54 U n 2 1 G n 2 2 C n 2 3 U n 2 4 U n 2 5 U n 2 6 G n 2 7 A n 2 8 U n 2 9 U n 2 10 U n 2 11 G n 2 12 G n 2 13 U n 2 14 G n 2 15 A n 2 16 A n 2 17 A n 2 18 U n 2 19 U n 2 20 C n 2 21 C n 2 22 A n 2 23 A n 2 24 A n 2 25 A n 2 26 C n 2 27 C n 2 28 G n 2 29 A n 2 30 C n 2 31 A n 2 32 G n 2 33 U n 2 34 A n 2 35 G n 2 36 A n 2 37 G n 2 38 U n 2 39 C n 2 40 U n 2 41 G n 2 42 G n 2 43 A n 2 44 U n 2 45 G n 2 46 A n 2 47 G n 2 48 A n 2 49 G n 2 50 A n 2 51 A n 2 52 G n 2 53 A n 2 54 U n 2 55 U n 2 56 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 54 'Fusobacterium nucleatum' ? 851 ? 2 1 sample 1 56 'Fusobacterium nucleatum' ? 851 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DKM non-polymer . ;5-[(3S,4S)-3-(dimethylamino)-4-hydroxypyrrolidin-1-yl]-6-fluoro-4-methyl-8-oxo-3,4-dihydro-8H-1-thia-4,9b-diazacyclopenta[cd]phenalene-9-carboxylic acid ; ? 'C20 H21 F N4 O4 S' 432.469 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G X . n A 1 2 G 2 2 2 G G X . n A 1 3 A 3 3 3 A A X . n A 1 4 U 4 4 4 U U X . n A 1 5 C 5 5 5 C C X . n A 1 6 U 6 6 6 U U X . n A 1 7 U 7 7 7 U U X . n A 1 8 C 8 8 8 C C X . n A 1 9 G 9 9 9 G G X . n A 1 10 G 10 10 10 G G X . n A 1 11 G 11 11 11 G G X . n A 1 12 G 12 12 12 G G X . n A 1 13 C 13 13 13 C C X . n A 1 14 A 14 14 14 A A X . n A 1 15 G 15 15 15 G G X . n A 1 16 G 16 16 16 G G X . n A 1 17 G 17 17 17 G G X . n A 1 18 U 18 18 18 U U X . n A 1 19 G 19 19 19 G G X . n A 1 20 A 20 20 20 A A X . n A 1 21 A 21 21 21 A A X . n A 1 22 A 22 22 22 A A X . n A 1 23 U 23 23 23 U U X . n A 1 24 U 24 24 24 U U X . n A 1 25 C 25 25 25 C C X . n A 1 26 C 26 26 26 C C X . n A 1 27 C 27 27 27 C C X . n A 1 28 G 28 28 28 G G X . n A 1 29 A 29 29 29 A A X . n A 1 30 C 30 30 30 C C X . n A 1 31 C 31 31 31 C C X . n A 1 32 G 32 32 32 G G X . n A 1 33 G 33 33 33 G G X . n A 1 34 U 34 34 34 U U X . n A 1 35 G 35 35 35 G G X . n A 1 36 G 36 36 36 G G X . n A 1 37 U 37 37 37 U U X . n A 1 38 A 38 38 38 A A X . n A 1 39 U 39 39 39 U U X . n A 1 40 A 40 40 40 A A X . n A 1 41 G 41 41 41 G G X . n A 1 42 U 42 42 42 U U X . n A 1 43 C 43 43 43 C C X . n A 1 44 C 44 44 44 C C X . n A 1 45 A 45 45 45 A A X . n A 1 46 C 46 46 46 C C X . n A 1 47 G 47 47 47 G G X . n A 1 48 A 48 48 48 A A X . n A 1 49 A 49 49 49 A A X . n A 1 50 A 50 50 50 A A X . n A 1 51 G 51 51 51 G G X . n A 1 52 C 52 52 52 C C X . n A 1 53 U 53 53 53 U U X . n A 1 54 U 54 54 54 U U X . n B 2 1 G 1 57 57 G G Y . n B 2 2 C 2 58 58 C C Y . n B 2 3 U 3 59 59 U U Y . n B 2 4 U 4 60 60 U U Y . n B 2 5 U 5 61 61 U U Y . n B 2 6 G 6 62 62 G G Y . n B 2 7 A 7 63 63 A A Y . n B 2 8 U 8 64 64 U U Y . n B 2 9 U 9 65 65 U U Y . n B 2 10 U 10 66 66 U U Y . n B 2 11 G 11 67 67 G G Y . n B 2 12 G 12 68 68 G G Y . n B 2 13 U 13 69 69 U U Y . n B 2 14 G 14 70 70 G G Y . n B 2 15 A 15 71 71 A A Y . n B 2 16 A 16 72 72 A A Y . n B 2 17 A 17 73 73 A A Y . n B 2 18 U 18 74 74 U U Y . n B 2 19 U 19 75 75 U U Y . n B 2 20 C 20 76 76 C C Y . n B 2 21 C 21 77 77 C C Y . n B 2 22 A 22 78 78 A A Y . n B 2 23 A 23 79 79 A A Y . n B 2 24 A 24 80 80 A A Y . n B 2 25 A 25 81 81 A A Y . n B 2 26 C 26 82 82 C C Y . n B 2 27 C 27 83 83 C C Y . n B 2 28 G 28 84 84 G G Y . n B 2 29 A 29 85 85 A A Y . n B 2 30 C 30 86 86 C C Y . n B 2 31 A 31 87 87 A A Y . n B 2 32 G 32 88 88 G G Y . n B 2 33 U 33 89 89 U U Y . n B 2 34 A 34 90 90 A A Y . n B 2 35 G 35 91 91 G G Y . n B 2 36 A 36 92 92 A A Y . n B 2 37 G 37 93 93 G G Y . n B 2 38 U 38 94 94 U U Y . n B 2 39 C 39 95 95 C C Y . n B 2 40 U 40 96 96 U U Y . n B 2 41 G 41 97 97 G G Y . n B 2 42 G 42 98 98 G G Y . n B 2 43 A 43 99 99 A A Y . n B 2 44 U 44 100 100 U U Y . n B 2 45 G 45 101 101 G G Y . n B 2 46 A 46 102 102 A A Y . n B 2 47 G 47 103 103 G G Y . n B 2 48 A 48 104 104 A A Y . n B 2 49 G 49 105 105 G G Y . n B 2 50 A 50 106 106 A A Y . n B 2 51 A 51 107 107 A A Y . n B 2 52 G 52 108 108 G G Y . n B 2 53 A 53 109 109 A A Y . n B 2 54 U 54 110 110 U U Y . n B 2 55 U 55 111 111 U U Y . n B 2 56 C 56 112 112 C C Y . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 DKM 1 500 500 DKM LIG X . D 4 MG 1 501 501 MG MG X . E 5 HOH 1 601 28 HOH HOH X . E 5 HOH 2 602 26 HOH HOH X . E 5 HOH 3 603 14 HOH HOH X . E 5 HOH 4 604 8 HOH HOH X . E 5 HOH 5 605 24 HOH HOH X . F 5 HOH 1 201 27 HOH HOH Y . F 5 HOH 2 202 10 HOH HOH Y . F 5 HOH 3 203 12 HOH HOH Y . F 5 HOH 4 204 23 HOH HOH Y . F 5 HOH 5 205 25 HOH HOH Y . F 5 HOH 6 206 9 HOH HOH Y . F 5 HOH 7 207 3 HOH HOH Y . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 X U 54 ? "C5'" ? A U 54 "C5'" 2 1 Y 1 X U 54 ? "C4'" ? A U 54 "C4'" 3 1 Y 1 X U 54 ? "O4'" ? A U 54 "O4'" 4 1 Y 1 X U 54 ? "C3'" ? A U 54 "C3'" 5 1 Y 1 X U 54 ? "O3'" ? A U 54 "O3'" 6 1 Y 1 X U 54 ? "C2'" ? A U 54 "C2'" 7 1 Y 1 X U 54 ? "O2'" ? A U 54 "O2'" 8 1 Y 1 X U 54 ? "C1'" ? A U 54 "C1'" 9 1 Y 1 X U 54 ? N1 ? A U 54 N1 10 1 Y 1 X U 54 ? C2 ? A U 54 C2 11 1 Y 1 X U 54 ? O2 ? A U 54 O2 12 1 Y 1 X U 54 ? N3 ? A U 54 N3 13 1 Y 1 X U 54 ? C4 ? A U 54 C4 14 1 Y 1 X U 54 ? O4 ? A U 54 O4 15 1 Y 1 X U 54 ? C5 ? A U 54 C5 16 1 Y 1 X U 54 ? C6 ? A U 54 C6 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? autoBUSTER ? ? ? 2.11.7 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? autoBUSTER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 6BFB _cell.details ? _cell.formula_units_Z ? _cell.length_a 71.130 _cell.length_a_esd ? _cell.length_b 71.130 _cell.length_b_esd ? _cell.length_c 141.190 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6BFB _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.90 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 57.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 300 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M sodium acetate pH 5.5-6.5, 0.2 M MgCl2, 7-11% v/v PEG 4000' _exptl_crystal_grow.pdbx_pH_range 5.5-6.5 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-03-08 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 17-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 107.33 _reflns.entry_id 6BFB _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.82 _reflns.d_resolution_low 56.46 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9904 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.3 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 32.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high . _reflns_shell.d_res_low ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.53430 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][2] 0.53430 _refine.aniso_B[2][3] 0.00000 _refine.aniso_B[3][3] -1.06870 _refine.B_iso_max ? _refine.B_iso_mean 104.19 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.935 _refine.correlation_coeff_Fo_to_Fc_free 0.917 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6BFB _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.82 _refine.ls_d_res_low 46.41 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9842 _refine.ls_number_reflns_R_free 481 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.0 _refine.ls_percent_reflns_R_free 4.890 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.205 _refine.ls_R_factor_R_free 0.243 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.203 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.336 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.357 _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI 1.852 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 6BFB _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.34 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2340 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 2383 _refine_hist.d_res_high 2.82 _refine_hist.d_res_low 46.41 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 ? 2674 ? t_bond_d 2.00 HARMONIC 'X-RAY DIFFRACTION' ? 0.78 ? 4181 ? t_angle_deg 2.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 549 ? t_dihedral_angle_d 2.00 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? ? ? t_incorr_chiral_ct ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_trig_c_planes ? ? 'X-RAY DIFFRACTION' ? ? ? 140 ? t_gen_planes 5.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 2674 ? t_it 20.00 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 0 ? t_nbd 5.00 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 22.60 ? ? ? t_other_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 436 ? t_chiral_improper_torsion 5.00 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 2629 ? t_ideal_dist_contact 4.00 SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.82 _refine_ls_shell.d_res_low 3.15 _refine_ls_shell.number_reflns_all 2902 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 147 _refine_ls_shell.number_reflns_R_work 2755 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.percent_reflns_R_free 5.07 _refine_ls_shell.R_factor_all 0.2300 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3172 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2259 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6BFB _struct.title 'Crystal structure of a F. nucleatum FMN riboswitch bound to WG-3' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6BFB _struct_keywords.text 'RNA, TRANSLATION, RNA-INHIBITOR COMPLEX' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6BFB 6BFB ? 1 ? 1 2 PDB 6BFB 6BFB ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6BFB X 1 ? 54 ? 6BFB 1 ? 54 ? 1 54 2 2 6BFB Y 1 ? 56 ? 6BFB 57 ? 112 ? 57 112 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5810 ? 1 MORE -21 ? 1 'SSA (A^2)' 16150 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C DKM . O3 ? ? ? 1_555 D MG . MG ? ? X DKM 500 X MG 501 1_555 ? ? ? ? ? ? ? 2.364 ? ? metalc2 metalc ? ? C DKM . O1 ? ? ? 1_555 D MG . MG ? ? X DKM 500 X MG 501 1_555 ? ? ? ? ? ? ? 2.452 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 56 N3 ? ? X G 1 Y C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 56 O2 ? ? X G 1 Y C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 56 N4 ? ? X G 1 Y C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B U 55 O2 ? ? X G 2 Y U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 B U 55 N3 ? ? X G 2 Y U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 54 N3 ? ? X A 3 Y U 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 54 O4 ? ? X A 3 Y U 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 4 N3 ? ? ? 1_555 B A 53 N1 ? ? X U 4 Y A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 O4 ? ? ? 1_555 B A 53 N6 ? ? X U 4 Y A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 52 N1 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 52 O6 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 52 N2 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 51 N1 ? ? X U 6 Y A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 51 N6 ? ? X U 6 Y A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 50 N1 ? ? X U 7 Y A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 50 N6 ? ? X U 7 Y A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 49 N1 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 49 O6 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 49 N2 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 9 N2 ? ? ? 1_555 B A 48 N7 ? ? X G 9 Y A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog21 hydrog ? ? A G 9 N3 ? ? ? 1_555 B A 48 N6 ? ? X G 9 Y A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog22 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 47 N2 ? ? X G 10 X G 47 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog23 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 31 O2 ? ? X G 11 X C 31 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog24 hydrog ? ? A G 12 N2 ? ? ? 1_555 B G 37 N3 ? ? X G 12 Y G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog25 hydrog ? ? A G 12 N3 ? ? ? 1_555 B G 37 N2 ? ? X G 12 Y G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog26 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 28 N1 ? ? X C 13 X G 28 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog27 hydrog ? ? A A 14 N6 ? ? ? 1_555 A G 28 N3 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog28 hydrog ? ? A A 14 N7 ? ? ? 1_555 A G 28 N2 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog29 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 26 N3 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 26 O2 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 26 N4 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 22 N7 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog39 hydrog ? ? A U 18 O2 ? ? ? 1_555 A A 22 N6 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog40 hydrog ? ? A G 19 N2 ? ? ? 1_555 B A 34 N7 ? ? X G 19 Y A 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog41 hydrog ? ? A G 19 N3 ? ? ? 1_555 B A 34 N6 ? ? X G 19 Y A 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog42 hydrog ? ? A A 29 N1 ? ? ? 1_555 B U 38 N3 ? ? X A 29 Y U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A A 29 N6 ? ? ? 1_555 B U 38 O4 ? ? X A 29 Y U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 30 N3 ? ? ? 1_555 B G 37 N1 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 30 N4 ? ? ? 1_555 B G 37 O6 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 30 O2 ? ? ? 1_555 B G 37 N2 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 31 N3 ? ? ? 1_555 B G 28 N1 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 31 N4 ? ? ? 1_555 B G 28 O6 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 31 O2 ? ? ? 1_555 B G 28 N2 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 32 N1 ? ? ? 1_555 B C 27 N3 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 32 N2 ? ? ? 1_555 B C 27 O2 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 32 O6 ? ? ? 1_555 B C 27 N4 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 46 N3 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 46 O2 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 46 N4 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 33 N2 ? ? ? 1_555 B A 48 N3 ? ? X G 33 Y A 104 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog57 hydrog ? ? A U 34 N3 ? ? ? 1_555 A A 45 N1 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A U 34 O4 ? ? ? 1_555 A A 45 N6 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 44 N3 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 44 O2 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 44 N4 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 43 N3 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 43 O2 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 43 N4 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 40 N7 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog66 hydrog ? ? A U 37 O2 ? ? ? 1_555 A A 40 N6 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog67 hydrog ? ? A A 38 N6 ? ? ? 1_555 B G 14 N3 ? ? X A 38 Y G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog68 hydrog ? ? A A 38 N7 ? ? ? 1_555 B G 14 N2 ? ? X A 38 Y G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog69 hydrog ? ? A G 41 N2 ? ? ? 1_555 B A 7 N3 ? ? X G 41 Y A 63 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog70 hydrog ? ? A G 41 N1 ? ? ? 1_555 B C 26 N3 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 41 N2 ? ? ? 1_555 B C 26 O2 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 41 O6 ? ? ? 1_555 B C 26 N4 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A U 42 N3 ? ? ? 1_555 B A 25 N1 ? ? X U 42 Y A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A U 42 O4 ? ? ? 1_555 B A 25 N6 ? ? X U 42 Y A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 48 N6 ? ? ? 1_555 B U 5 O2 ? ? X A 48 Y U 61 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog76 hydrog ? ? A A 49 N1 ? ? ? 1_555 B U 4 N3 ? ? X A 49 Y U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A A 49 N6 ? ? ? 1_555 B U 4 O4 ? ? X A 49 Y U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A A 50 N1 ? ? ? 1_555 B U 3 N3 ? ? X A 50 Y U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A A 50 N6 ? ? ? 1_555 B U 3 O4 ? ? X A 50 Y U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 51 N1 ? ? ? 1_555 B C 2 N3 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 51 N2 ? ? ? 1_555 B C 2 O2 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A G 51 O6 ? ? ? 1_555 B C 2 N4 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 52 N3 ? ? ? 1_555 B G 1 N1 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 52 N4 ? ? ? 1_555 B G 1 O6 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 52 O2 ? ? ? 1_555 B G 1 N2 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 27 O2 ? ? Y G 62 Y C 83 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog87 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 24 N1 ? ? Y U 64 Y A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 24 N6 ? ? Y U 64 Y A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 23 N1 ? ? Y U 65 Y A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 23 N6 ? ? Y U 65 Y A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 22 N1 ? ? Y U 66 Y A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 22 N6 ? ? Y U 66 Y A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 21 N3 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 21 O2 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 21 N4 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 20 N3 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 20 O2 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 20 N4 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B U 13 N3 ? ? ? 1_555 B A 17 N7 ? ? Y U 69 Y A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog100 hydrog ? ? B U 13 O2 ? ? ? 1_555 B A 17 N6 ? ? Y U 69 Y A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog101 hydrog ? ? B A 29 N1 ? ? ? 1_555 B G 42 N1 ? ? Y A 85 Y G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog102 hydrog ? ? B A 29 N6 ? ? ? 1_555 B G 42 O6 ? ? Y A 85 Y G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog103 hydrog ? ? B C 30 N3 ? ? ? 1_555 B G 41 N1 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B C 30 N4 ? ? ? 1_555 B G 41 O6 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B C 30 O2 ? ? ? 1_555 B G 41 N2 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B A 31 N1 ? ? ? 1_555 B U 40 N3 ? ? Y A 87 Y U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B A 31 N6 ? ? ? 1_555 B U 40 O4 ? ? Y A 87 Y U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B G 32 N1 ? ? ? 1_555 B C 39 N3 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B G 32 N2 ? ? ? 1_555 B C 39 O2 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B G 32 O6 ? ? ? 1_555 B C 39 N4 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B U 33 N3 ? ? ? 1_555 B A 36 N7 ? ? Y U 89 Y A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog112 hydrog ? ? B U 33 O2 ? ? ? 1_555 B A 36 N6 ? ? Y U 89 Y A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id O3 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id C _pdbx_struct_conn_angle.ptnr1_label_comp_id DKM _pdbx_struct_conn_angle.ptnr1_label_seq_id . _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id X _pdbx_struct_conn_angle.ptnr1_auth_comp_id DKM _pdbx_struct_conn_angle.ptnr1_auth_seq_id 500 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id MG _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id D _pdbx_struct_conn_angle.ptnr2_label_comp_id MG _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id X _pdbx_struct_conn_angle.ptnr2_auth_comp_id MG _pdbx_struct_conn_angle.ptnr2_auth_seq_id 501 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O1 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id C _pdbx_struct_conn_angle.ptnr3_label_comp_id DKM _pdbx_struct_conn_angle.ptnr3_label_seq_id . _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id X _pdbx_struct_conn_angle.ptnr3_auth_comp_id DKM _pdbx_struct_conn_angle.ptnr3_auth_seq_id 500 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 65.3 _pdbx_struct_conn_angle.value_esd ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X DKM 500 ? 9 'binding site for residue DKM X 500' AC2 Software X MG 501 ? 1 'binding site for residue MG X 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 G A 10 ? G X 10 . ? 1_555 ? 2 AC1 9 G A 11 ? G X 11 . ? 1_555 ? 3 AC1 9 G A 47 ? G X 47 . ? 1_555 ? 4 AC1 9 A A 48 ? A X 48 . ? 1_555 ? 5 AC1 9 MG D . ? MG X 501 . ? 1_555 ? 6 AC1 9 U B 5 ? U Y 61 . ? 1_555 ? 7 AC1 9 G B 6 ? G Y 62 . ? 1_555 ? 8 AC1 9 G B 28 ? G Y 84 . ? 1_555 ? 9 AC1 9 A B 29 ? A Y 85 . ? 1_555 ? 10 AC2 1 DKM C . ? DKM X 500 . ? 1_555 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 OP1 _pdbx_validate_rmsd_angle.auth_asym_id_1 Y _pdbx_validate_rmsd_angle.auth_comp_id_1 G _pdbx_validate_rmsd_angle.auth_seq_id_1 57 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 Y _pdbx_validate_rmsd_angle.auth_comp_id_2 G _pdbx_validate_rmsd_angle.auth_seq_id_2 57 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP2 _pdbx_validate_rmsd_angle.auth_asym_id_3 Y _pdbx_validate_rmsd_angle.auth_comp_id_3 G _pdbx_validate_rmsd_angle.auth_seq_id_3 57 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 109.88 _pdbx_validate_rmsd_angle.angle_target_value 119.60 _pdbx_validate_rmsd_angle.angle_deviation -9.72 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 26.5663 40.3519 15.7745 -0.3330 -0.2070 -0.2562 0.0460 -0.0264 0.0330 5.4604 2.4945 2.3067 -0.9686 -0.2539 -0.2980 0.2351 -0.0941 -0.8363 0.2436 0.1166 0.3704 -0.2646 -0.1301 -0.3517 'X-RAY DIFFRACTION' 2 ? refined 22.9560 43.9106 17.0999 -0.3940 -0.2372 -0.3299 0.0350 0.0389 -0.0259 4.5424 2.4574 2.4314 -0.9479 0.8391 -0.7895 0.1724 -0.1819 -0.6270 0.5007 -0.0076 0.3916 -0.3327 -0.2465 -0.1649 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '{ X|* }' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '{ Y|* }' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 DKM N1 N N N 73 DKM N3 N N N 74 DKM C4 C N N 75 DKM C5 C N S 76 DKM C6 C Y N 77 DKM C7 C Y N 78 DKM C8 C Y N 79 DKM C10 C N N 80 DKM C13 C N N 81 DKM C15 C N N 82 DKM C17 C Y N 83 DKM O2 O N N 84 DKM C19 C N N 85 DKM O3 O N N 86 DKM C11 C N N 87 DKM O1 O N N 88 DKM C12 C N N 89 DKM C14 C N N 90 DKM S S N N 91 DKM C18 C Y N 92 DKM C9 C Y N 93 DKM F F N N 94 DKM N2 N N N 95 DKM C16 C N N 96 DKM C3 C N N 97 DKM O O N N 98 DKM C2 C N S 99 DKM N N N N 100 DKM C1 C N N 101 DKM C C N N 102 DKM H9 H N N 103 DKM H10 H N N 104 DKM H11 H N N 105 DKM H13 H N N 106 DKM H14 H N N 107 DKM H15 H N N 108 DKM H16 H N N 109 DKM H20 H N N 110 DKM H18 H N N 111 DKM H17 H N N 112 DKM H19 H N N 113 DKM H7 H N N 114 DKM H8 H N N 115 DKM H12 H N N 116 DKM H6 H N N 117 DKM H5 H N N 118 DKM H4 H N N 119 DKM H3 H N N 120 DKM H2 H N N 121 DKM H H N N 122 DKM H1 H N N 123 G OP3 O N N 124 G P P N N 125 G OP1 O N N 126 G OP2 O N N 127 G "O5'" O N N 128 G "C5'" C N N 129 G "C4'" C N R 130 G "O4'" O N N 131 G "C3'" C N S 132 G "O3'" O N N 133 G "C2'" C N R 134 G "O2'" O N N 135 G "C1'" C N R 136 G N9 N Y N 137 G C8 C Y N 138 G N7 N Y N 139 G C5 C Y N 140 G C6 C N N 141 G O6 O N N 142 G N1 N N N 143 G C2 C N N 144 G N2 N N N 145 G N3 N N N 146 G C4 C Y N 147 G HOP3 H N N 148 G HOP2 H N N 149 G "H5'" H N N 150 G "H5''" H N N 151 G "H4'" H N N 152 G "H3'" H N N 153 G "HO3'" H N N 154 G "H2'" H N N 155 G "HO2'" H N N 156 G "H1'" H N N 157 G H8 H N N 158 G H1 H N N 159 G H21 H N N 160 G H22 H N N 161 HOH O O N N 162 HOH H1 H N N 163 HOH H2 H N N 164 MG MG MG N N 165 U OP3 O N N 166 U P P N N 167 U OP1 O N N 168 U OP2 O N N 169 U "O5'" O N N 170 U "C5'" C N N 171 U "C4'" C N R 172 U "O4'" O N N 173 U "C3'" C N S 174 U "O3'" O N N 175 U "C2'" C N R 176 U "O2'" O N N 177 U "C1'" C N R 178 U N1 N N N 179 U C2 C N N 180 U O2 O N N 181 U N3 N N N 182 U C4 C N N 183 U O4 O N N 184 U C5 C N N 185 U C6 C N N 186 U HOP3 H N N 187 U HOP2 H N N 188 U "H5'" H N N 189 U "H5''" H N N 190 U "H4'" H N N 191 U "H3'" H N N 192 U "HO3'" H N N 193 U "H2'" H N N 194 U "HO2'" H N N 195 U "H1'" H N N 196 U H3 H N N 197 U H5 H N N 198 U H6 H N N 199 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 DKM C N sing N N 76 DKM C1 N sing N N 77 DKM N C2 sing N N 78 DKM O C5 sing N N 79 DKM C2 C5 sing N N 80 DKM C2 C3 sing N N 81 DKM C5 C4 sing N N 82 DKM C3 N1 sing N N 83 DKM C4 N1 sing N N 84 DKM N1 C6 sing N N 85 DKM C16 N2 sing N N 86 DKM N2 C17 sing N N 87 DKM N2 C15 sing N N 88 DKM C6 C17 doub Y N 89 DKM C6 C7 sing Y N 90 DKM F C7 sing N N 91 DKM C17 C18 sing Y N 92 DKM C7 C8 doub Y N 93 DKM C15 C14 sing N N 94 DKM C18 C9 doub Y N 95 DKM C18 N3 sing N N 96 DKM C8 C9 sing Y N 97 DKM C14 N3 sing N N 98 DKM C14 C13 doub N N 99 DKM C9 C10 sing N N 100 DKM N3 C12 sing N N 101 DKM C13 S sing N N 102 DKM C12 S sing N N 103 DKM C12 C11 doub N N 104 DKM C10 C11 sing N N 105 DKM C10 O1 doub N N 106 DKM C11 C19 sing N N 107 DKM C19 O3 sing N N 108 DKM C19 O2 doub N N 109 DKM C4 H9 sing N N 110 DKM C4 H10 sing N N 111 DKM C5 H11 sing N N 112 DKM C8 H13 sing N N 113 DKM C13 H14 sing N N 114 DKM C15 H15 sing N N 115 DKM C15 H16 sing N N 116 DKM O3 H20 sing N N 117 DKM C16 H18 sing N N 118 DKM C16 H17 sing N N 119 DKM C16 H19 sing N N 120 DKM C3 H7 sing N N 121 DKM C3 H8 sing N N 122 DKM O H12 sing N N 123 DKM C2 H6 sing N N 124 DKM C1 H5 sing N N 125 DKM C1 H4 sing N N 126 DKM C1 H3 sing N N 127 DKM C H2 sing N N 128 DKM C H sing N N 129 DKM C H1 sing N N 130 G OP3 P sing N N 131 G OP3 HOP3 sing N N 132 G P OP1 doub N N 133 G P OP2 sing N N 134 G P "O5'" sing N N 135 G OP2 HOP2 sing N N 136 G "O5'" "C5'" sing N N 137 G "C5'" "C4'" sing N N 138 G "C5'" "H5'" sing N N 139 G "C5'" "H5''" sing N N 140 G "C4'" "O4'" sing N N 141 G "C4'" "C3'" sing N N 142 G "C4'" "H4'" sing N N 143 G "O4'" "C1'" sing N N 144 G "C3'" "O3'" sing N N 145 G "C3'" "C2'" sing N N 146 G "C3'" "H3'" sing N N 147 G "O3'" "HO3'" sing N N 148 G "C2'" "O2'" sing N N 149 G "C2'" "C1'" sing N N 150 G "C2'" "H2'" sing N N 151 G "O2'" "HO2'" sing N N 152 G "C1'" N9 sing N N 153 G "C1'" "H1'" sing N N 154 G N9 C8 sing Y N 155 G N9 C4 sing Y N 156 G C8 N7 doub Y N 157 G C8 H8 sing N N 158 G N7 C5 sing Y N 159 G C5 C6 sing N N 160 G C5 C4 doub Y N 161 G C6 O6 doub N N 162 G C6 N1 sing N N 163 G N1 C2 sing N N 164 G N1 H1 sing N N 165 G C2 N2 sing N N 166 G C2 N3 doub N N 167 G N2 H21 sing N N 168 G N2 H22 sing N N 169 G N3 C4 sing N N 170 HOH O H1 sing N N 171 HOH O H2 sing N N 172 U OP3 P sing N N 173 U OP3 HOP3 sing N N 174 U P OP1 doub N N 175 U P OP2 sing N N 176 U P "O5'" sing N N 177 U OP2 HOP2 sing N N 178 U "O5'" "C5'" sing N N 179 U "C5'" "C4'" sing N N 180 U "C5'" "H5'" sing N N 181 U "C5'" "H5''" sing N N 182 U "C4'" "O4'" sing N N 183 U "C4'" "C3'" sing N N 184 U "C4'" "H4'" sing N N 185 U "O4'" "C1'" sing N N 186 U "C3'" "O3'" sing N N 187 U "C3'" "C2'" sing N N 188 U "C3'" "H3'" sing N N 189 U "O3'" "HO3'" sing N N 190 U "C2'" "O2'" sing N N 191 U "C2'" "C1'" sing N N 192 U "C2'" "H2'" sing N N 193 U "O2'" "HO2'" sing N N 194 U "C1'" N1 sing N N 195 U "C1'" "H1'" sing N N 196 U N1 C2 sing N N 197 U N1 C6 sing N N 198 U C2 O2 doub N N 199 U C2 N3 sing N N 200 U N3 C4 sing N N 201 U N3 H3 sing N N 202 U C4 O4 doub N N 203 U C4 C5 sing N N 204 U C5 C6 doub N N 205 U C5 H5 sing N N 206 U C6 H6 sing N N 207 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6BFB 'double helix' 6BFB 'a-form double helix' 6BFB 'hairpin loop' 6BFB 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 56 1_555 0.389 0.028 0.345 0.728 -23.102 -7.590 1 X_G1:C112_Y X 1 ? Y 112 ? 19 1 1 A G 2 1_555 B U 55 1_555 -1.122 0.156 -0.195 -3.406 -18.396 2.475 2 X_G2:U111_Y X 2 ? Y 111 ? 28 1 1 A A 3 1_555 B U 54 1_555 0.794 -0.063 0.032 -9.386 -17.924 1.233 3 X_A3:U110_Y X 3 ? Y 110 ? 20 1 1 A U 4 1_555 B A 53 1_555 0.282 -0.013 0.410 -8.246 -14.953 8.546 4 X_U4:A109_Y X 4 ? Y 109 ? 20 1 1 A C 5 1_555 B G 52 1_555 0.658 -0.251 0.320 -0.228 -14.990 -0.082 5 X_C5:G108_Y X 5 ? Y 108 ? 19 1 1 A U 6 1_555 B A 51 1_555 -0.674 -0.052 0.353 -2.837 -19.659 4.257 6 X_U6:A107_Y X 6 ? Y 107 ? 20 1 1 A U 7 1_555 B A 50 1_555 -0.134 0.064 0.119 4.945 -24.353 11.003 7 X_U7:A106_Y X 7 ? Y 106 ? 20 1 1 A C 8 1_555 B G 49 1_555 -0.193 0.091 0.005 6.678 -16.170 4.068 8 X_C8:G105_Y X 8 ? Y 105 ? 19 1 1 A G 9 1_555 B A 48 1_555 6.494 -4.467 0.561 -29.557 -51.210 -17.584 9 X_G9:A104_Y X 9 ? Y 104 ? 11 10 1 A G 10 1_555 A G 47 1_555 -5.421 -0.351 0.707 29.738 -24.236 70.997 10 X_G10:G47_X X 10 ? X 47 ? ? ? 1 A G 33 1_555 A C 46 1_555 -0.408 -0.149 0.177 2.347 -21.909 1.286 11 X_G33:C46_X X 33 ? X 46 ? 19 1 1 A U 34 1_555 A A 45 1_555 -0.312 -0.010 0.271 1.470 -19.030 6.882 12 X_U34:A45_X X 34 ? X 45 ? 20 1 1 A G 35 1_555 A C 44 1_555 0.277 -0.137 0.096 -8.322 -21.387 -1.655 13 X_G35:C44_X X 35 ? X 44 ? 19 1 1 A G 36 1_555 A C 43 1_555 -0.108 -0.140 0.095 -16.149 -17.592 1.234 14 X_G36:C43_X X 36 ? X 43 ? 19 1 1 A U 37 1_555 A A 40 1_555 4.306 -2.353 -0.289 5.508 2.183 -92.264 15 X_U37:A40_X X 37 ? X 40 ? 24 4 1 A A 38 1_555 B G 14 1_555 -6.565 -4.072 0.147 -16.108 22.166 -0.539 16 X_A38:G70_Y X 38 ? Y 70 ? 11 9 1 B A 17 1_555 B U 13 1_555 -4.410 -2.162 0.516 -2.100 12.872 -85.776 17 Y_A73:U69_Y Y 73 ? Y 69 ? 24 4 1 B C 20 1_555 B G 12 1_555 -0.148 -0.139 -0.070 15.303 -15.181 -2.368 18 Y_C76:G68_Y Y 76 ? Y 68 ? 19 1 1 B C 21 1_555 B G 11 1_555 0.408 -0.045 0.220 6.874 -17.729 4.674 19 Y_C77:G67_Y Y 77 ? Y 67 ? 19 1 1 B A 22 1_555 B U 10 1_555 -0.176 -0.119 0.733 2.184 -7.279 5.489 20 Y_A78:U66_Y Y 78 ? Y 66 ? 20 1 1 B A 23 1_555 B U 9 1_555 0.452 -0.076 0.195 -3.621 -20.597 5.009 21 Y_A79:U65_Y Y 79 ? Y 65 ? 20 1 1 B A 24 1_555 B U 8 1_555 0.103 -0.150 0.472 5.933 -4.150 9.581 22 Y_A80:U64_Y Y 80 ? Y 64 ? 20 1 1 B A 25 1_555 A U 42 1_555 0.537 -0.168 -0.615 -10.063 -12.224 -4.359 23 Y_A81:U42_X Y 81 ? X 42 ? 20 1 1 B C 26 1_555 A G 41 1_555 0.502 -0.230 0.039 4.848 -23.173 2.823 24 Y_C82:G41_X Y 82 ? X 41 ? 19 1 1 B C 27 1_555 A G 32 1_555 0.405 -0.251 0.070 -3.815 -7.549 -3.839 25 Y_C83:G32_X Y 83 ? X 32 ? 19 1 1 B G 28 1_555 A C 31 1_555 -0.146 -0.108 0.225 7.755 -18.617 2.606 26 Y_G84:C31_X Y 84 ? X 31 ? 19 1 1 B G 37 1_555 A C 30 1_555 -0.465 -0.274 0.303 2.774 -20.036 -0.101 27 Y_G93:C30_X Y 93 ? X 30 ? 19 1 1 B U 38 1_555 A A 29 1_555 -0.455 -0.019 -0.329 10.165 -18.769 -3.251 28 Y_U94:A29_X Y 94 ? X 29 ? 20 1 1 A C 13 1_555 A G 28 1_555 3.882 0.743 1.319 -17.812 -11.805 49.994 29 X_C13:G28_X X 13 ? X 28 ? ? 5 1 A G 15 1_555 A C 27 1_555 -0.635 -0.051 -0.298 -2.712 -8.708 5.656 30 X_G15:C27_X X 15 ? X 27 ? 19 1 1 A G 16 1_555 A C 26 1_555 -0.132 -0.039 -0.240 -12.002 -16.860 5.300 31 X_G16:C26_X X 16 ? X 26 ? 19 1 1 A G 17 1_555 A C 25 1_555 0.202 0.040 0.021 -17.418 -6.383 -2.944 32 X_G17:C25_X X 17 ? X 25 ? 19 1 1 A U 18 1_555 A A 22 1_555 4.564 -2.434 0.899 4.484 16.164 -92.647 33 X_U18:A22_X X 18 ? X 22 ? 24 4 1 A G 19 1_555 B A 34 1_555 6.762 -4.569 0.437 16.477 17.340 -1.001 34 X_G19:A90_Y X 19 ? Y 90 ? 11 10 1 A A 48 1_555 B U 5 1_555 -3.660 -0.556 0.493 4.443 -2.103 -16.032 35 X_A48:U61_Y X 48 ? Y 61 ? ? ? 1 A A 49 1_555 B U 4 1_555 0.119 0.003 0.011 8.580 -13.565 6.036 36 X_A49:U60_Y X 49 ? Y 60 ? 20 1 1 A A 50 1_555 B U 3 1_555 0.257 -0.066 0.287 10.081 -17.035 6.286 37 X_A50:U59_Y X 50 ? Y 59 ? 20 1 1 A G 51 1_555 B C 2 1_555 0.465 -0.134 0.204 -7.209 -20.618 1.984 38 X_G51:C58_Y X 51 ? Y 58 ? 19 1 1 A C 52 1_555 B G 1 1_555 0.622 -0.087 0.621 -8.582 -18.355 3.173 39 X_C52:G57_Y X 52 ? Y 57 ? 19 1 1 B A 29 1_555 B G 42 1_555 0.379 1.602 -0.168 7.687 -15.957 -7.761 40 Y_A85:G98_Y Y 85 ? Y 98 ? 8 1 1 B C 30 1_555 B G 41 1_555 0.339 -0.002 0.118 16.457 -22.936 4.910 41 Y_C86:G97_Y Y 86 ? Y 97 ? 19 1 1 B A 31 1_555 B U 40 1_555 -0.497 -0.331 0.616 -3.399 -27.145 3.142 42 Y_A87:U96_Y Y 87 ? Y 96 ? 20 1 1 B G 32 1_555 B C 39 1_555 -0.180 -0.107 0.182 -17.097 -22.426 -0.236 43 Y_G88:C95_Y Y 88 ? Y 95 ? 19 1 1 B U 33 1_555 B A 36 1_555 4.406 -2.726 -0.055 5.900 7.362 -91.807 44 Y_U89:A92_Y Y 89 ? Y 92 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 56 1_555 A G 2 1_555 B U 55 1_555 0.176 -1.522 3.327 -0.350 8.508 29.390 -4.495 -0.399 2.785 16.342 0.673 30.572 1 XX_G1G2:U111C112_YY X 1 ? Y 112 ? X 2 ? Y 111 ? 1 A G 2 1_555 B U 55 1_555 A A 3 1_555 B U 54 1_555 -0.414 -1.091 3.326 -3.952 6.156 41.678 -2.143 0.170 3.166 8.573 5.503 42.287 2 XX_G2A3:U110U111_YY X 2 ? Y 111 ? X 3 ? Y 110 ? 1 A A 3 1_555 B U 54 1_555 A U 4 1_555 B A 53 1_555 0.304 -1.941 3.104 2.123 9.175 29.263 -5.224 -0.213 2.414 17.596 -4.071 30.709 3 XX_A3U4:A109U110_YY X 3 ? Y 110 ? X 4 ? Y 109 ? 1 A U 4 1_555 B A 53 1_555 A C 5 1_555 B G 52 1_555 0.118 -1.939 3.058 0.953 4.823 24.614 -5.714 -0.023 2.638 11.171 -2.207 25.092 4 XX_U4C5:G108A109_YY X 4 ? Y 109 ? X 5 ? Y 108 ? 1 A C 5 1_555 B G 52 1_555 A U 6 1_555 B A 51 1_555 0.005 -1.509 3.111 -0.512 8.831 26.521 -4.973 -0.117 2.488 18.604 1.080 27.932 5 XX_C5U6:A107G108_YY X 5 ? Y 108 ? X 6 ? Y 107 ? 1 A U 6 1_555 B A 51 1_555 A U 7 1_555 B A 50 1_555 0.243 -0.907 3.045 -0.625 4.481 32.444 -2.313 -0.530 2.892 7.972 1.111 32.749 6 XX_U6U7:A106A107_YY X 6 ? Y 107 ? X 7 ? Y 106 ? 1 A U 7 1_555 B A 50 1_555 A C 8 1_555 B G 49 1_555 0.107 -1.060 3.221 -0.610 1.010 34.478 -1.941 -0.272 3.187 1.703 1.029 34.497 7 XX_U7C8:G105A106_YY X 7 ? Y 106 ? X 8 ? Y 105 ? 1 A C 8 1_555 B G 49 1_555 A G 9 1_555 B A 48 1_555 -2.965 -0.913 4.563 4.176 28.394 54.912 -2.670 3.163 3.544 28.714 -4.224 61.438 8 XX_C8G9:A104G105_YY X 8 ? Y 105 ? X 9 ? Y 104 ? 1 A G 10 1_555 A G 47 1_555 A G 33 1_555 A C 46 1_555 -0.322 -4.285 -3.098 128.215 -93.478 10.573 -2.489 -0.261 1.964 -52.435 -71.921 158.765 9 XX_G10G33:C46G47_XX X 10 ? X 47 ? X 33 ? X 46 ? 1 A G 33 1_555 A C 46 1_555 A U 34 1_555 A A 45 1_555 -0.804 -2.206 3.080 -6.601 4.531 28.719 -5.159 0.297 2.817 8.919 12.993 29.792 10 XX_G33U34:A45C46_XX X 33 ? X 46 ? X 34 ? X 45 ? 1 A U 34 1_555 A A 45 1_555 A G 35 1_555 A C 44 1_555 -0.701 -1.581 3.358 -1.232 11.183 36.001 -3.844 0.932 2.783 17.572 1.936 37.662 11 XX_U34G35:C44A45_XX X 34 ? X 45 ? X 35 ? X 44 ? 1 A G 35 1_555 A C 44 1_555 A G 36 1_555 A C 43 1_555 0.532 -1.927 3.363 4.323 7.862 33.971 -4.342 -0.251 2.903 13.173 -7.244 35.102 12 XX_G35G36:C43C44_XX X 35 ? X 44 ? X 36 ? X 43 ? 1 A G 36 1_555 A C 43 1_555 A U 37 1_555 A A 40 1_555 -0.929 -1.346 2.781 6.842 0.277 81.910 -1.030 0.850 2.707 0.211 -5.211 82.145 13 XX_G36U37:A40C43_XX X 36 ? X 43 ? X 37 ? X 40 ? 1 A A 38 1_555 B G 14 1_555 B A 17 1_555 B U 13 1_555 -1.114 -0.492 3.023 -6.005 0.742 -2.313 2.020 -28.757 0.104 -8.473 -68.575 -6.477 14 XY_A38A73:U69G70_YY X 38 ? Y 70 ? Y 73 ? Y 69 ? 1 B A 17 1_555 B U 13 1_555 B C 20 1_555 B G 12 1_555 2.435 -1.579 3.185 -1.709 4.476 71.296 -1.497 -2.141 3.044 3.836 1.465 71.436 15 YY_A73C76:G68U69_YY Y 73 ? Y 69 ? Y 76 ? Y 68 ? 1 B C 20 1_555 B G 12 1_555 B C 21 1_555 B G 11 1_555 -0.455 -1.569 3.452 -5.701 6.346 39.558 -3.004 0.000 3.205 9.246 8.306 40.431 16 YY_C76C77:G67G68_YY Y 76 ? Y 68 ? Y 77 ? Y 67 ? 1 B C 21 1_555 B G 11 1_555 B A 22 1_555 B U 10 1_555 -0.246 -1.638 2.957 -6.384 11.102 31.102 -4.346 -0.443 2.262 19.692 11.323 33.575 17 YY_C77A78:U66G67_YY Y 77 ? Y 67 ? Y 78 ? Y 66 ? 1 B A 22 1_555 B U 10 1_555 B A 23 1_555 B U 9 1_555 0.194 -1.482 3.473 9.283 7.938 34.238 -3.516 1.017 3.016 12.982 -15.181 36.290 18 YY_A78A79:U65U66_YY Y 78 ? Y 66 ? Y 79 ? Y 65 ? 1 B A 23 1_555 B U 9 1_555 B A 24 1_555 B U 8 1_555 0.602 -0.912 2.992 0.044 -1.633 28.228 -1.518 -1.222 3.040 -3.345 -0.090 28.275 19 YY_A79A80:U64U65_YY Y 79 ? Y 65 ? Y 80 ? Y 64 ? 1 B A 24 1_555 B U 8 1_555 B A 25 1_555 A U 42 1_555 -0.184 -3.046 3.712 10.881 8.348 26.440 -7.674 2.625 2.403 16.883 -22.007 29.729 20 YY_A80A81:U42U64_XY Y 80 ? Y 64 ? Y 81 ? X 42 ? 1 B A 25 1_555 A U 42 1_555 B C 26 1_555 A G 41 1_555 1.055 -1.545 2.799 -2.521 4.252 35.240 -3.035 -2.027 2.523 6.980 4.138 35.574 21 YY_A81C82:G41U42_XX Y 81 ? X 42 ? Y 82 ? X 41 ? 1 B C 26 1_555 A G 41 1_555 B C 27 1_555 A G 32 1_555 -0.749 -1.403 3.566 0.394 5.578 33.360 -3.363 1.355 3.287 9.633 -0.681 33.812 22 YY_C82C83:G32G41_XX Y 82 ? X 41 ? Y 83 ? X 32 ? 1 B C 27 1_555 A G 32 1_555 B G 28 1_555 A C 31 1_555 0.296 -0.227 3.069 -0.019 13.363 29.691 -2.575 -0.533 2.719 24.571 0.035 32.498 23 YY_C83G84:C31G32_XX Y 83 ? X 32 ? Y 84 ? X 31 ? 1 B G 28 1_555 A C 31 1_555 B G 37 1_555 A C 30 1_555 1.137 -1.773 3.257 0.439 10.814 22.530 -6.940 -2.515 2.206 25.850 -1.049 24.964 24 YY_G84G93:C30C31_XX Y 84 ? X 31 ? Y 93 ? X 30 ? 1 B G 37 1_555 A C 30 1_555 B U 38 1_555 A A 29 1_555 -0.863 -1.504 2.965 1.513 2.878 34.447 -2.921 1.657 2.795 4.847 -2.548 34.596 25 YY_G93U94:A29C30_XX Y 93 ? X 30 ? Y 94 ? X 29 ? 1 B U 38 1_555 A A 29 1_555 A C 13 1_555 A G 28 1_555 1.633 -1.379 3.870 -5.776 3.848 54.457 -1.760 -2.168 3.596 4.186 6.283 54.864 26 YX_U94C13:G28A29_XX Y 94 ? X 29 ? X 13 ? X 28 ? 1 A C 13 1_555 A G 28 1_555 A G 15 1_555 A C 27 1_555 -6.227 0.052 2.613 5.633 5.149 35.338 -0.392 10.562 1.625 8.361 -9.148 36.127 27 XX_C13G15:C27G28_XX X 13 ? X 28 ? X 15 ? X 27 ? 1 A G 15 1_555 A C 27 1_555 A G 16 1_555 A C 26 1_555 0.940 -2.250 3.523 0.822 11.829 26.146 -7.049 -1.725 2.333 24.602 -1.709 28.666 28 XX_G15G16:C26C27_XX X 15 ? X 27 ? X 16 ? X 26 ? 1 A G 16 1_555 A C 26 1_555 A G 17 1_555 A C 25 1_555 -0.727 -2.057 3.233 -1.553 7.070 38.149 -3.905 0.916 2.848 10.700 2.350 38.805 29 XX_G16G17:C25C26_XX X 16 ? X 26 ? X 17 ? X 25 ? 1 A G 17 1_555 A C 25 1_555 A U 18 1_555 A A 22 1_555 -2.501 -1.700 3.041 -1.372 0.211 74.973 -1.402 2.015 3.076 0.173 1.127 74.984 30 XX_G17U18:A22C25_XX X 17 ? X 25 ? X 18 ? X 22 ? 1 A U 18 1_555 A A 22 1_555 A G 19 1_555 B A 34 1_555 1.883 -0.559 2.928 7.154 2.542 -4.528 -0.151 22.859 0.139 -19.831 55.812 -8.838 31 XX_U18G19:A90A22_YX X 18 ? X 22 ? X 19 ? Y 90 ? 1 A A 48 1_555 B U 5 1_555 A A 49 1_555 B U 4 1_555 0.768 -1.114 3.308 -2.601 11.111 46.303 -2.244 -1.153 2.937 13.883 3.250 47.614 32 XX_A48A49:U60U61_YY X 48 ? Y 61 ? X 49 ? Y 60 ? 1 A A 49 1_555 B U 4 1_555 A A 50 1_555 B U 3 1_555 -0.367 -0.922 3.148 -3.265 5.486 34.504 -2.309 0.146 2.992 9.151 5.447 35.072 33 XX_A49A50:U59U60_YY X 49 ? Y 60 ? X 50 ? Y 59 ? 1 A A 50 1_555 B U 3 1_555 A G 51 1_555 B C 2 1_555 -0.050 -1.762 3.529 1.538 11.685 34.047 -4.508 0.299 2.788 19.254 -2.534 35.972 34 XX_A50G51:C58U59_YY X 50 ? Y 59 ? X 51 ? Y 58 ? 1 A G 51 1_555 B C 2 1_555 A C 52 1_555 B G 1 1_555 0.161 -1.913 3.206 0.033 4.876 31.945 -4.247 -0.284 2.890 8.795 -0.060 32.305 35 XX_G51C52:G57C58_YY X 51 ? Y 58 ? X 52 ? Y 57 ? 1 B A 29 1_555 B G 42 1_555 B C 30 1_555 B G 41 1_555 0.977 -1.183 2.971 -3.870 5.837 29.827 -3.227 -2.505 2.554 11.148 7.391 30.620 36 YY_A85C86:G97G98_YY Y 85 ? Y 98 ? Y 86 ? Y 97 ? 1 B C 30 1_555 B G 41 1_555 B A 31 1_555 B U 40 1_555 -0.152 -1.639 3.405 -5.272 15.038 32.760 -4.610 -0.452 2.441 24.910 8.732 36.334 37 YY_C86A87:U96G97_YY Y 86 ? Y 97 ? Y 87 ? Y 96 ? 1 B A 31 1_555 B U 40 1_555 B G 32 1_555 B C 39 1_555 0.005 -1.409 3.455 7.528 11.934 40.387 -3.136 0.751 2.900 16.681 -10.524 42.684 38 YY_A87G88:C95U96_YY Y 87 ? Y 96 ? Y 88 ? Y 95 ? 1 B G 32 1_555 B C 39 1_555 B U 33 1_555 B A 36 1_555 -0.953 -0.940 2.879 6.425 0.510 78.705 -0.752 0.902 2.802 0.401 -5.059 78.925 39 YY_G88U89:A92C95_YY Y 88 ? Y 95 ? Y 89 ? Y 92 ? # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id DKM _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id DKM _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 6BFB _atom_sites.fract_transf_matrix[1][1] 0.014059 _atom_sites.fract_transf_matrix[1][2] 0.008117 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016234 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007083 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F H MG N O P S # loop_