HEADER HYDROLASE, LIGASE/INHIBITOR 27-OCT-17 6BG3 TITLE STRUCTURE OF (3S,4S)-1-BENZYL-4-(3-(3-(TRIFLUOROMETHYL)PHENYL)UREIDO) TITLE 2 PIPERIDIN-3-YL ACETATE BOUND TO DCN1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOLYSIN, DCN1-LIKE PROTEIN 1 CHIMERA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PONY; COMPND 5 SYNONYM: DCUN1 DOMAIN-CONTAINING PROTEIN 1,DEFECTIVE IN CULLIN COMPND 6 NEDDYLATION PROTEIN 1-LIKE PROTEIN 1,SQUAMOUS CELL CARCINOMA-RELATED COMPND 7 ONCOGENE,LYSIS PROTEIN,LYSOZYME,MURAMIDASE; COMPND 8 EC: 3.2.1.17; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 10665, 9606; SOURCE 5 GENE: E, DCUN1D1, DCUN1L1, RP42, SCCRO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSF DUET KEYWDS E3 LIGASE, HYDROLASE, LIGASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.K.GUY,B.A.SCHULMAN,D.C.SCOTT,J.T.HAMMILL REVDAT 2 04-OCT-23 6BG3 1 REMARK REVDAT 1 26-SEP-18 6BG3 0 JRNL AUTH J.T.HAMMILL,D.C.SCOTT,J.MIN,M.C.CONNELLY,G.HOLBROOK,F.ZHU, JRNL AUTH 2 A.MATHENY,L.YANG,B.SINGH,B.A.SCHULMAN,R.K.GUY JRNL TITL PIPERIDINYL UREAS CHEMICALLY CONTROL DEFECTIVE IN CULLIN JRNL TITL 2 NEDDYLATION 1 (DCN1)-MEDIATED CULLIN NEDDYLATION. JRNL REF J. MED. CHEM. V. 61 2680 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 29547696 JRNL DOI 10.1021/ACS.JMEDCHEM.7B01277 REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 176089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 8825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3330 - 3.2609 0.98 5616 333 0.1564 0.1722 REMARK 3 2 3.2609 - 2.5883 0.99 5617 308 0.1578 0.1682 REMARK 3 3 2.5883 - 2.2612 1.00 5657 307 0.1540 0.1728 REMARK 3 4 2.2612 - 2.0544 0.99 5602 269 0.1509 0.1621 REMARK 3 5 2.0544 - 1.9072 0.99 5641 287 0.1511 0.1655 REMARK 3 6 1.9072 - 1.7947 0.99 5591 299 0.1544 0.1629 REMARK 3 7 1.7947 - 1.7048 0.99 5611 283 0.1557 0.1813 REMARK 3 8 1.7048 - 1.6306 0.99 5636 279 0.1448 0.1690 REMARK 3 9 1.6306 - 1.5678 0.99 5596 278 0.1446 0.1607 REMARK 3 10 1.5678 - 1.5137 0.99 5574 292 0.1435 0.1718 REMARK 3 11 1.5137 - 1.4664 0.99 5581 286 0.1399 0.1622 REMARK 3 12 1.4664 - 1.4245 0.99 5612 300 0.1484 0.1687 REMARK 3 13 1.4245 - 1.3870 0.99 5586 295 0.1480 0.1879 REMARK 3 14 1.3870 - 1.3531 0.99 5538 306 0.1469 0.1796 REMARK 3 15 1.3531 - 1.3224 0.99 5613 280 0.1490 0.1803 REMARK 3 16 1.3224 - 1.2942 0.99 5579 277 0.1473 0.1633 REMARK 3 17 1.2942 - 1.2683 0.99 5602 301 0.1527 0.1879 REMARK 3 18 1.2683 - 1.2444 0.99 5566 301 0.1514 0.1746 REMARK 3 19 1.2444 - 1.2222 0.99 5568 300 0.1549 0.1695 REMARK 3 20 1.2222 - 1.2015 0.99 5560 311 0.1514 0.1634 REMARK 3 21 1.2015 - 1.1821 0.99 5549 298 0.1513 0.1907 REMARK 3 22 1.1821 - 1.1639 0.99 5599 294 0.1543 0.1748 REMARK 3 23 1.1639 - 1.1468 0.99 5587 299 0.1626 0.1821 REMARK 3 24 1.1468 - 1.1306 0.99 5564 292 0.1748 0.2137 REMARK 3 25 1.1306 - 1.1153 0.99 5573 296 0.1818 0.2060 REMARK 3 26 1.1153 - 1.1008 0.99 5518 304 0.1927 0.2336 REMARK 3 27 1.1008 - 1.0871 0.99 5605 291 0.2101 0.2286 REMARK 3 28 1.0871 - 1.0740 0.98 5494 298 0.2382 0.2864 REMARK 3 29 1.0740 - 1.0615 0.98 5471 292 0.2550 0.2638 REMARK 3 30 1.0615 - 1.0496 0.94 5358 269 0.2898 0.2941 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3105 REMARK 3 ANGLE : 1.402 4202 REMARK 3 CHIRALITY : 0.187 448 REMARK 3 PLANARITY : 0.007 544 REMARK 3 DIHEDRAL : 12.732 1182 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BG3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000230757. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 176138 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.53700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2LZM, 3TDU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG3350, 0.2M NH4BR, EVAPORATION, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.45750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 ILE A 1251 REMARK 465 ALA A 1252 REMARK 465 GLY A 1253 REMARK 465 THR A 1254 REMARK 465 LYS A 1255 REMARK 465 SER A 1256 REMARK 465 THR A 1257 REMARK 465 THR A 1258 REMARK 465 VAL A 1259 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -12 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 GLN A1120 CG CD OE1 NE2 REMARK 470 ARG A1206 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 1110 O HOH A 1409 1.39 REMARK 500 O HOH A 1445 O HOH A 1511 1.83 REMARK 500 O HOH A 1409 O HOH A 1437 1.85 REMARK 500 O HOH A 1963 O HOH A 2005 1.85 REMARK 500 O HOH A 1909 O HOH A 1975 1.87 REMARK 500 O HOH A 1797 O HOH A 1954 1.89 REMARK 500 O HOH A 1421 O HOH A 1755 1.91 REMARK 500 O HOH A 1416 O HOH A 1678 1.96 REMARK 500 O PRO A 1249 O HOH A 1401 1.97 REMARK 500 OE1 GLU A 45 O HOH A 1402 1.99 REMARK 500 O HOH A 1822 O HOH A 1852 1.99 REMARK 500 O HOH A 1529 O HOH A 1931 2.00 REMARK 500 OE1 GLU A 1066 O HOH A 1403 2.03 REMARK 500 O HOH A 1976 O HOH A 2037 2.03 REMARK 500 O HOH A 1419 O HOH A 1842 2.04 REMARK 500 O HOH A 1724 O HOH A 1753 2.04 REMARK 500 O HOH A 1613 O HOH A 1697 2.05 REMARK 500 O HOH A 1413 O HOH A 1729 2.05 REMARK 500 O HOH A 1786 O HOH A 1866 2.05 REMARK 500 O HOH A 1406 O HOH A 1916 2.07 REMARK 500 O HOH A 2025 O HOH A 2067 2.08 REMARK 500 OD2 ASP A 1211 O HOH A 1404 2.09 REMARK 500 O HOH A 1422 O HOH A 1816 2.12 REMARK 500 O HOH A 1806 O HOH A 1848 2.12 REMARK 500 O HOH A 1743 O HOH A 1859 2.12 REMARK 500 O HOH A 1629 O HOH A 1764 2.13 REMARK 500 O HOH A 1642 O HOH A 2001 2.14 REMARK 500 O HOH A 1448 O HOH A 1864 2.15 REMARK 500 O HOH A 1833 O HOH A 1942 2.15 REMARK 500 OG1 THR A 1113 O HOH A 1405 2.16 REMARK 500 O HOH A 1622 O HOH A 1758 2.18 REMARK 500 O GLN A 1250 O HOH A 1406 2.18 REMARK 500 O HOH A 1751 O HOH A 1821 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1963 O HOH A 2045 2555 2.18 REMARK 500 O HOH A 1847 O HOH A 2050 1655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 20 -166.35 -76.30 REMARK 500 LYS A1205 124.58 -32.64 REMARK 500 MET A1227 18.03 55.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2067 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A2068 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A2069 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A2070 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A2071 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A2072 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A2073 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A2074 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A2075 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A2076 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A2077 DISTANCE = 7.91 ANGSTROMS REMARK 525 HOH A2078 DISTANCE = 8.80 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DOJ A 1301 DBREF 6BG3 A 1 164 UNP P00720 ENLYS_BPT4 1 164 DBREF 6BG3 A 1062 1259 UNP Q96GG9 DCNL1_HUMAN 62 259 SEQADV 6BG3 MET A -21 UNP P00720 INITIATING METHIONINE SEQADV 6BG3 GLY A -20 UNP P00720 EXPRESSION TAG SEQADV 6BG3 SER A -19 UNP P00720 EXPRESSION TAG SEQADV 6BG3 SER A -18 UNP P00720 EXPRESSION TAG SEQADV 6BG3 HIS A -17 UNP P00720 EXPRESSION TAG SEQADV 6BG3 HIS A -16 UNP P00720 EXPRESSION TAG SEQADV 6BG3 HIS A -15 UNP P00720 EXPRESSION TAG SEQADV 6BG3 HIS A -14 UNP P00720 EXPRESSION TAG SEQADV 6BG3 HIS A -13 UNP P00720 EXPRESSION TAG SEQADV 6BG3 HIS A -12 UNP P00720 EXPRESSION TAG SEQADV 6BG3 SER A -11 UNP P00720 EXPRESSION TAG SEQADV 6BG3 GLN A -10 UNP P00720 EXPRESSION TAG SEQADV 6BG3 ASP A -9 UNP P00720 EXPRESSION TAG SEQADV 6BG3 LEU A -8 UNP P00720 EXPRESSION TAG SEQADV 6BG3 GLU A -7 UNP P00720 EXPRESSION TAG SEQADV 6BG3 ASN A -6 UNP P00720 EXPRESSION TAG SEQADV 6BG3 LEU A -5 UNP P00720 EXPRESSION TAG SEQADV 6BG3 TYR A -4 UNP P00720 EXPRESSION TAG SEQADV 6BG3 PHE A -3 UNP P00720 EXPRESSION TAG SEQADV 6BG3 GLN A -2 UNP P00720 EXPRESSION TAG SEQADV 6BG3 GLY A -1 UNP P00720 EXPRESSION TAG SEQADV 6BG3 SER A 0 UNP P00720 EXPRESSION TAG SEQADV 6BG3 GLY A 12 UNP P00720 ARG 12 CONFLICT SEQADV 6BG3 THR A 54 UNP P00720 CYS 54 CONFLICT SEQADV 6BG3 ALA A 97 UNP P00720 CYS 97 CONFLICT SEQADV 6BG3 ARG A 137 UNP P00720 ILE 137 CONFLICT SEQADV 6BG3 THR A 146 UNP P00720 ALA 146 CONFLICT SEQRES 1 A 384 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 384 LEU GLU ASN LEU TYR PHE GLN GLY SER MET ASN ILE PHE SEQRES 3 A 384 GLU MET LEU ARG ILE ASP GLU GLY LEU ARG LEU LYS ILE SEQRES 4 A 384 TYR LYS ASP THR GLU GLY TYR TYR THR ILE GLY ILE GLY SEQRES 5 A 384 HIS LEU LEU THR LYS SER PRO SER LEU ASN ALA ALA LYS SEQRES 6 A 384 SER GLU LEU ASP LYS ALA ILE GLY ARG ASN THR ASN GLY SEQRES 7 A 384 VAL ILE THR LYS ASP GLU ALA GLU LYS LEU PHE ASN GLN SEQRES 8 A 384 ASP VAL ASP ALA ALA VAL ARG GLY ILE LEU ARG ASN ALA SEQRES 9 A 384 LYS LEU LYS PRO VAL TYR ASP SER LEU ASP ALA VAL ARG SEQRES 10 A 384 ARG ALA ALA LEU ILE ASN MET VAL PHE GLN MET GLY GLU SEQRES 11 A 384 THR GLY VAL ALA GLY PHE THR ASN SER LEU ARG MET LEU SEQRES 12 A 384 GLN GLN LYS ARG TRP ASP GLU ALA ALA VAL ASN LEU ALA SEQRES 13 A 384 LYS SER ARG TRP TYR ASN GLN THR PRO ASN ARG THR LYS SEQRES 14 A 384 ARG VAL ILE THR THR PHE ARG THR GLY THR TRP ASP ALA SEQRES 15 A 384 TYR LYS ASN LEU ARG LYS LYS LEU GLU GLN LEU TYR ASN SEQRES 16 A 384 ARG TYR LYS ASP PRO GLN ASP GLU ASN LYS ILE GLY ILE SEQRES 17 A 384 ASP GLY ILE GLN GLN PHE CYS ASP ASP LEU ALA LEU ASP SEQRES 18 A 384 PRO ALA SER ILE SER VAL LEU ILE ILE ALA TRP LYS PHE SEQRES 19 A 384 ARG ALA ALA THR GLN CYS GLU PHE SER LYS GLN GLU PHE SEQRES 20 A 384 MET ASP GLY MET THR GLU LEU GLY CYS ASP SER ILE GLU SEQRES 21 A 384 LYS LEU LYS ALA GLN ILE PRO LYS MET GLU GLN GLU LEU SEQRES 22 A 384 LYS GLU PRO GLY ARG PHE LYS ASP PHE TYR GLN PHE THR SEQRES 23 A 384 PHE ASN PHE ALA LYS ASN PRO GLY GLN LYS GLY LEU ASP SEQRES 24 A 384 LEU GLU MET ALA ILE ALA TYR TRP ASN LEU VAL LEU ASN SEQRES 25 A 384 GLY ARG PHE LYS PHE LEU ASP LEU TRP ASN LYS PHE LEU SEQRES 26 A 384 LEU GLU HIS HIS LYS ARG SER ILE PRO LYS ASP THR TRP SEQRES 27 A 384 ASN LEU LEU LEU ASP PHE SER THR MET ILE ALA ASP ASP SEQRES 28 A 384 MET SER ASN TYR ASP GLU GLU GLY ALA TRP PRO VAL LEU SEQRES 29 A 384 ILE ASP ASP PHE VAL GLU PHE ALA ARG PRO GLN ILE ALA SEQRES 30 A 384 GLY THR LYS SER THR THR VAL HET DOJ A1301 57 HETNAM DOJ N-{(3S,4S)-1-BENZYL-3-[(1S)-1-HYDROXYETHOXY]PIPERIDIN- HETNAM 2 DOJ 4-YL}-N'-[3-(TRIFLUOROMETHYL)PHENYL]UREA FORMUL 2 DOJ C22 H26 F3 N3 O3 FORMUL 3 HOH *678(H2 O) HELIX 1 AA1 ASP A -9 TYR A -4 5 6 HELIX 2 AA2 ASN A 2 GLU A 11 1 10 HELIX 3 AA3 SER A 38 GLY A 51 1 14 HELIX 4 AA4 THR A 59 ARG A 80 1 22 HELIX 5 AA5 LYS A 83 LEU A 91 1 9 HELIX 6 AA6 ASP A 92 GLY A 113 1 22 HELIX 7 AA7 PHE A 114 GLN A 123 1 10 HELIX 8 AA8 ARG A 125 LYS A 135 1 11 HELIX 9 AA9 SER A 136 THR A 142 1 7 HELIX 10 AB1 THR A 142 GLY A 156 1 15 HELIX 11 AB2 TRP A 158 TYR A 1072 1 18 HELIX 12 AB3 GLY A 1082 LEU A 1093 1 12 HELIX 13 AB4 SER A 1099 PHE A 1109 1 11 HELIX 14 AB5 LYS A 1119 LEU A 1129 1 11 HELIX 15 AB6 SER A 1133 LEU A 1148 1 16 HELIX 16 AB7 GLY A 1152 LYS A 1166 1 15 HELIX 17 AB8 LEU A 1175 ASN A 1187 1 13 HELIX 18 AB9 PHE A 1192 HIS A 1203 1 12 HELIX 19 AC1 PRO A 1209 ILE A 1223 1 15 HELIX 20 AC2 PRO A 1237 ARG A 1248 1 12 SHEET 1 AA1 3 ARG A 14 LYS A 19 0 SHEET 2 AA1 3 TYR A 25 GLY A 28 -1 O THR A 26 N TYR A 18 SHEET 3 AA1 3 HIS A 31 THR A 34 -1 O LEU A 33 N TYR A 25 SHEET 1 AA2 3 LYS A1073 ASP A1074 0 SHEET 2 AA2 3 ASP A1077 ILE A1081 -1 O LYS A1080 N ASP A1074 SHEET 3 AA2 3 PHE A1117 SER A1118 -1 O PHE A1117 N ILE A1081 SHEET 1 AA3 2 LEU A1173 ASP A1174 0 SHEET 2 AA3 2 SER A1207 ILE A1208 -1 O ILE A1208 N LEU A1173 SITE 1 AC1 16 ILE A1083 ILE A1086 PHE A1089 PRO A1097 SITE 2 AC1 16 VAL A1102 ILE A1105 ALA A1106 ALA A1111 SITE 3 AC1 16 THR A1113 GLN A1114 GLU A1116 PHE A1117 SITE 4 AC1 16 ALA A1180 TYR A1181 HOH A1482 HOH A1558 CRYST1 35.169 96.915 59.388 90.00 105.50 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028434 0.000000 0.007884 0.00000 SCALE2 0.000000 0.010318 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017474 0.00000