data_6BGB # _entry.id 6BGB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6BGB pdb_00006bgb 10.2210/pdb6bgb/pdb WWPDB D_1000230527 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-12-06 2 'Structure model' 1 1 2017-12-13 3 'Structure model' 1 2 2020-01-01 4 'Structure model' 1 3 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_audit_support 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_pdbx_audit_support.funding_organization' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6BGB _pdbx_database_status.recvd_initial_deposition_date 2017-10-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 4NFO unspecified PDB . 4NFP unspecified PDB . 4NFQ unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fisher, A.J.' 1 0000-0003-3488-6594 'Beal, P.A.' 2 ? 'Mumbleau, M.M.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Org. Biomol. Chem.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1477-0539 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 15 _citation.language ? _citation.page_first 10029 _citation.page_last 10036 _citation.title 'Controlling miRNA-like off-target effects of an siRNA with nucleobase modifications.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/c7ob02654d _citation.pdbx_database_id_PubMed 29164215 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Suter, S.R.' 1 ? primary 'Ball-Jones, A.' 2 ? primary 'Mumbleau, M.M.' 3 ? primary 'Valenzuela, R.' 4 ? primary 'Ibarra-Soza, J.' 5 ? primary 'Owens, H.' 6 ? primary 'Fisher, A.J.' 7 ? primary 'Beal, P.A.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "(5'-R(*GP*CP*AP*GP*(A7C)P*CP*UP*UP*AP*AP*GP*UP*CP*UP*GP*C)-3')" 5322.137 3 ? ? ? ? 2 water nat water 18.015 10 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GCAG(A7C)CUUAAGUCUGC' _entity_poly.pdbx_seq_one_letter_code_can GCAGXCUUAAGUCUGC _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 A n 1 4 G n 1 5 A7C n 1 6 C n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 G n 1 12 U n 1 13 C n 1 14 U n 1 15 G n 1 16 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A7C 'RNA linking' . ;3-[1-(4-bromophenyl)-1H-1,2,3-triazol-4-yl]-1-[5-O-(trihydroxy-lambda~5~-phosphanyl)-beta-D-ribofuranosyl]-1H-pyrazolo[3,4-d]pyrimidin-4-amine ; ? 'C18 H20 Br N8 O7 P' 571.279 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 A7C 5 5 5 A7C A7C A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 U 14 14 14 U U A . n A 1 15 G 15 15 15 G G A . n A 1 16 C 16 16 16 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 C 2 2 2 C C B . n B 1 3 A 3 3 3 A A B . n B 1 4 G 4 4 4 G G B . n B 1 5 A7C 5 5 5 A7C A7C B . n B 1 6 C 6 6 6 C C B . n B 1 7 U 7 7 7 U U B . n B 1 8 U 8 8 8 U U B . n B 1 9 A 9 9 9 A A B . n B 1 10 A 10 10 10 A A B . n B 1 11 G 11 11 11 G G B . n B 1 12 U 12 12 12 U U B . n B 1 13 C 13 13 13 C C B . n B 1 14 U 14 14 14 U U B . n B 1 15 G 15 15 15 G G B . n B 1 16 C 16 16 16 C C B . n C 1 1 G 1 1 1 G G C . n C 1 2 C 2 2 2 C C C . n C 1 3 A 3 3 3 A A C . n C 1 4 G 4 4 4 G G C . n C 1 5 A7C 5 5 5 A7C A7C C . n C 1 6 C 6 6 6 C C C . n C 1 7 U 7 7 7 U U C . n C 1 8 U 8 8 8 U U C . n C 1 9 A 9 9 9 A A C . n C 1 10 A 10 10 10 A A C . n C 1 11 G 11 11 11 G G C . n C 1 12 U 12 12 12 U U C . n C 1 13 C 13 13 13 C C C . n C 1 14 U 14 14 14 U U C . n C 1 15 G 15 15 15 G G C . n C 1 16 C 16 16 16 C C C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 101 4 HOH HOH A . D 2 HOH 2 102 8 HOH HOH A . E 2 HOH 1 101 5 HOH HOH B . E 2 HOH 2 102 1 HOH HOH B . E 2 HOH 3 103 9 HOH HOH B . F 2 HOH 1 101 7 HOH HOH C . F 2 HOH 2 102 2 HOH HOH C . F 2 HOH 3 103 11 HOH HOH C . F 2 HOH 4 104 10 HOH HOH C . F 2 HOH 5 105 12 HOH HOH C . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.11.1_2575: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 120.46 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6BGB _cell.details ? _cell.formula_units_Z ? _cell.length_a 74.640 _cell.length_a_esd ? _cell.length_b 43.150 _cell.length_b_esd ? _cell.length_c 48.940 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6BGB _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 310.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;RNA in 10% v/v MPD, 12 mM spermine, 80 mM potassium chloride, 20 mM magnesium chloride, 40 mM sodium cacodylate, pH 7.0, equilibrated against reservoir of 35% v/v MPD ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details 'primary mirror: flat, secondary mirror: uncooled cylindrical silicon bent into toroid' _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-12-19 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'water-cooled flat double Si(111) Khozu' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.11583 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.11583 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6BGB _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.65 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15214 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.percent_possible_obs 92.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.2 _reflns.pdbx_Rmerge_I_obs 0.028 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.031 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.69 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.33 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 695 _reflns_shell.percent_possible_all 57.4 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.218 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.4 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.248 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.994 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6BGB _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.650 _refine.ls_d_res_low 42.187 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14821 _refine.ls_number_reflns_R_free 727 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 92.90 _refine.ls_percent_reflns_R_free 4.91 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2188 _refine.ls_R_factor_R_free 0.2558 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2167 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0. _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 48.22 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.22 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1047 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 10 _refine_hist.number_atoms_total 1057 _refine_hist.d_res_high 1.650 _refine_hist.d_res_low 42.187 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 ? 1170 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.967 ? 1815 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 7.951 ? 570 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.030 ? 234 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 54 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.6502 1.7776 . . 78 1967 63.00 . . . 0.4497 . 0.3992 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7776 1.9565 . . 142 3004 97.00 . . . 0.4148 . 0.3347 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9565 2.2396 . . 150 3027 98.00 . . . 0.3564 . 0.3163 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2396 2.8215 . . 189 3024 99.00 . . . 0.3458 . 0.3019 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8215 42.2005 . . 168 3072 97.00 . . . 0.2123 . 0.1747 . . . . . . . . . . # _struct.entry_id 6BGB _struct.title 'Crystal Structure of the 16mer GCAGNCUUAAGUCUGC containing BrPh 7-triazolyl-8-aza-7-deazaadenosine' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6BGB _struct_keywords.text 'duplex, structural classification, synthetic, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6BGB _struct_ref.pdbx_db_accession 6BGB _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6BGB A 1 ? 16 ? 6BGB 1 ? 16 ? 1 16 2 1 6BGB B 1 ? 16 ? 6BGB 1 ? 16 ? 1 16 3 1 6BGB C 1 ? 16 ? 6BGB 1 ? 16 ? 1 16 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1510 ? 1 MORE -11 ? 1 'SSA (A^2)' 5980 ? 2 'ABSA (A^2)' 1510 ? 2 MORE -11 ? 2 'SSA (A^2)' 5980 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,D,E 2 1,2 C,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 49.8305174765 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 42.1854616772 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 4 "O3'" ? ? ? 1_555 A A7C 5 P ? ? A G 4 A A7C 5 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale2 covale one ? A A7C 5 "O3'" ? ? ? 1_555 A C 6 P ? ? A A7C 5 A C 6 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale3 covale both ? B G 4 "O3'" ? ? ? 1_555 B A7C 5 P ? ? B G 4 B A7C 5 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale4 covale one ? B A7C 5 "O3'" ? ? ? 1_555 B C 6 P ? ? B A7C 5 B C 6 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale5 covale both ? C G 4 "O3'" ? ? ? 1_555 C A7C 5 P ? ? C G 4 C A7C 5 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale6 covale one ? C A7C 5 "O3'" ? ? ? 1_555 C C 6 P ? ? C A7C 5 C C 6 1_555 ? ? ? ? ? ? ? 1.621 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 16 N3 ? ? A G 1 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 16 O2 ? ? A G 1 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 16 N4 ? ? A G 1 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 15 N1 ? ? A C 2 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 15 O6 ? ? A C 2 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 15 N2 ? ? A C 2 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 14 N3 ? ? A A 3 B U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 14 O4 ? ? A A 3 B U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 13 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 13 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 13 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 14 N3 ? ? ? 1_555 B A 3 N1 ? ? A U 14 B A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 14 O4 ? ? ? 1_555 B A 3 N6 ? ? A U 14 B A 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 15 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 15 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 15 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 15 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 15 B C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 16 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 16 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 16 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 16 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 16 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 16 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 7.0951 16.6014 34.9983 0.7579 0.6811 0.6431 -0.1141 0.2335 -0.1785 3.9411 4.8989 6.4882 0.0326 -1.3717 1.3910 0.5775 -0.0403 0.8880 0.3748 0.4420 -1.4308 -1.2737 -0.1081 -0.8721 'X-RAY DIFFRACTION' 2 ? refined 2.2823 9.0760 24.7340 0.5941 0.4463 0.4886 0.0456 0.1357 0.0023 5.1252 9.6529 2.2436 -0.1965 1.5215 1.6738 0.1048 0.7170 0.3551 0.3677 1.0033 -0.5607 -0.7408 0.7713 -0.9260 'X-RAY DIFFRACTION' 3 ? refined -1.2083 20.0652 13.9576 0.4915 0.7005 0.7289 0.0551 -0.0540 0.2695 2.5287 0.6456 1.7625 1.1877 -2.0079 -0.9219 -0.3539 -0.0879 0.0047 -0.8117 0.8910 0.9181 0.7023 -0.0020 -0.5507 'X-RAY DIFFRACTION' 4 ? refined 8.3749 16.2472 2.6738 0.5892 0.6076 0.5125 -0.0451 -0.0877 -0.0613 6.6546 0.8376 5.6215 -0.1165 -1.3527 -0.3256 0.2335 1.1869 -0.8875 -0.6539 -0.4165 0.3553 0.0795 -1.1568 0.2179 'X-RAY DIFFRACTION' 5 ? refined 3.2051 9.9295 7.1745 0.7497 0.6249 0.6133 -0.0513 -0.2570 0.0734 4.3201 3.2875 5.2278 0.7009 2.7675 -0.1528 0.8796 -0.0170 -1.7979 0.2751 0.2979 -0.2185 0.4941 -1.0573 -1.0602 'X-RAY DIFFRACTION' 6 ? refined 7.3228 17.8676 17.4524 0.3666 0.5425 0.4689 -0.0226 -0.0709 0.1263 6.0558 6.2365 7.4185 0.4656 -0.0367 2.1610 0.3274 0.7595 -0.4640 0.8859 0.5437 0.2916 0.9079 -0.3774 -0.6503 'X-RAY DIFFRACTION' 7 ? refined -3.8944 15.3498 28.2427 0.5652 0.5917 0.7372 0.1064 0.2133 0.1155 1.4074 3.0799 2.6051 0.2579 -0.3877 -2.5462 0.7685 0.0481 0.6884 1.0590 -0.1708 0.5686 -0.4259 0.4547 -0.7024 'X-RAY DIFFRACTION' 8 ? refined 4.2303 8.9757 39.5148 0.6102 0.5716 0.5325 -0.0032 -0.0157 -0.1227 0.9453 4.9936 4.4431 -1.8304 -0.6262 -0.9939 -0.4113 -1.1340 0.7227 0.7024 0.4342 -0.5566 -1.0045 -0.3905 -0.0593 'X-RAY DIFFRACTION' 9 ? refined 21.0798 22.1454 35.0122 0.6084 0.8522 0.6535 0.0302 0.0553 0.2671 0.6852 4.0248 4.9290 0.0554 -0.7811 -3.7323 0.3329 -0.1484 0.8834 -0.1964 0.8463 1.4348 0.4982 -0.8319 -0.9334 'X-RAY DIFFRACTION' 10 ? refined 29.9769 21.7479 24.7354 0.4947 0.4960 0.4816 -0.0912 -0.0879 0.1137 7.3618 4.0417 7.4687 0.8092 -2.1695 0.2021 1.1346 0.2137 -0.1111 -0.1361 -0.1828 0.5108 -0.1715 -0.8809 -0.8848 'X-RAY DIFFRACTION' 11 ? refined 22.1872 13.2420 13.9471 0.6681 0.4745 0.7093 0.0402 -0.2267 -0.1188 1.8810 1.9791 3.6341 0.2844 2.4769 -0.4690 0.2525 0.9455 -1.0747 0.3206 0.3763 -0.3215 -0.1532 0.6319 -0.7970 'X-RAY DIFFRACTION' 12 ? refined 20.6910 23.4349 2.6732 0.6117 0.6780 0.5497 0.0173 0.0902 -0.0199 1.9180 5.2172 4.8387 -2.0205 0.8901 -1.2502 0.0600 -0.0388 0.0792 -1.2696 -0.1776 -0.6501 0.9446 0.8098 0.1028 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 4 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 5 through 8 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 9 through 12 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 13 through 16 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 1 through 4 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 5 through 8 ) ; 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 9 through 12 ) ; 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 13 through 16 ) ; 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 1 through 4 ) ; 'X-RAY DIFFRACTION' 10 10 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 5 through 8 ) ; 'X-RAY DIFFRACTION' 11 11 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 9 through 12 ) ; 'X-RAY DIFFRACTION' 12 12 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 13 through 16 ) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 A7C "C1'" C N R 38 A7C C2 C Y N 39 A7C "C2'" C N R 40 A7C C21 C Y N 41 A7C C22 C Y N 42 A7C C26 C Y N 43 A7C C27 C Y N 44 A7C C28 C Y N 45 A7C C29 C Y N 46 A7C "C3'" C N S 47 A7C C30 C Y N 48 A7C C31 C Y N 49 A7C C4 C Y N 50 A7C "C4'" C N R 51 A7C C5 C Y N 52 A7C "C5'" C N N 53 A7C C6 C Y N 54 A7C C7 C Y N 55 A7C N1 N Y N 56 A7C N23 N Y N 57 A7C N24 N Y N 58 A7C N25 N Y N 59 A7C N3 N Y N 60 A7C N6 N N N 61 A7C N8 N Y N 62 A7C N9 N Y N 63 A7C "O2'" O N N 64 A7C "O3'" O N N 65 A7C "O4'" O N N 66 A7C "O5'" O N N 67 A7C OP1 O N N 68 A7C OP2 O N N 69 A7C P P N N 70 A7C BR3 BR N N 71 A7C H1 H N N 72 A7C H2 H N N 73 A7C H3 H N N 74 A7C H4 H N N 75 A7C H5 H N N 76 A7C H6 H N N 77 A7C H7 H N N 78 A7C H8 H N N 79 A7C H9 H N N 80 A7C H10 H N N 81 A7C H11 H N N 82 A7C H12 H N N 83 A7C H13 H N N 84 A7C H14 H N N 85 A7C H15 H N N 86 A7C H16 H N N 87 A7C H17 H N N 88 A7C H18 H N N 89 A7C OP3 O N N 90 A7C H19 H N N 91 A7C H20 H N N 92 C OP3 O N N 93 C P P N N 94 C OP1 O N N 95 C OP2 O N N 96 C "O5'" O N N 97 C "C5'" C N N 98 C "C4'" C N R 99 C "O4'" O N N 100 C "C3'" C N S 101 C "O3'" O N N 102 C "C2'" C N R 103 C "O2'" O N N 104 C "C1'" C N R 105 C N1 N N N 106 C C2 C N N 107 C O2 O N N 108 C N3 N N N 109 C C4 C N N 110 C N4 N N N 111 C C5 C N N 112 C C6 C N N 113 C HOP3 H N N 114 C HOP2 H N N 115 C "H5'" H N N 116 C "H5''" H N N 117 C "H4'" H N N 118 C "H3'" H N N 119 C "HO3'" H N N 120 C "H2'" H N N 121 C "HO2'" H N N 122 C "H1'" H N N 123 C H41 H N N 124 C H42 H N N 125 C H5 H N N 126 C H6 H N N 127 G OP3 O N N 128 G P P N N 129 G OP1 O N N 130 G OP2 O N N 131 G "O5'" O N N 132 G "C5'" C N N 133 G "C4'" C N R 134 G "O4'" O N N 135 G "C3'" C N S 136 G "O3'" O N N 137 G "C2'" C N R 138 G "O2'" O N N 139 G "C1'" C N R 140 G N9 N Y N 141 G C8 C Y N 142 G N7 N Y N 143 G C5 C Y N 144 G C6 C N N 145 G O6 O N N 146 G N1 N N N 147 G C2 C N N 148 G N2 N N N 149 G N3 N N N 150 G C4 C Y N 151 G HOP3 H N N 152 G HOP2 H N N 153 G "H5'" H N N 154 G "H5''" H N N 155 G "H4'" H N N 156 G "H3'" H N N 157 G "HO3'" H N N 158 G "H2'" H N N 159 G "HO2'" H N N 160 G "H1'" H N N 161 G H8 H N N 162 G H1 H N N 163 G H21 H N N 164 G H22 H N N 165 HOH O O N N 166 HOH H1 H N N 167 HOH H2 H N N 168 U OP3 O N N 169 U P P N N 170 U OP1 O N N 171 U OP2 O N N 172 U "O5'" O N N 173 U "C5'" C N N 174 U "C4'" C N R 175 U "O4'" O N N 176 U "C3'" C N S 177 U "O3'" O N N 178 U "C2'" C N R 179 U "O2'" O N N 180 U "C1'" C N R 181 U N1 N N N 182 U C2 C N N 183 U O2 O N N 184 U N3 N N N 185 U C4 C N N 186 U O4 O N N 187 U C5 C N N 188 U C6 C N N 189 U HOP3 H N N 190 U HOP2 H N N 191 U "H5'" H N N 192 U "H5''" H N N 193 U "H4'" H N N 194 U "H3'" H N N 195 U "HO3'" H N N 196 U "H2'" H N N 197 U "HO2'" H N N 198 U "H1'" H N N 199 U H3 H N N 200 U H5 H N N 201 U H6 H N N 202 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 A7C BR3 C29 sing N N 40 A7C C28 C29 doub Y N 41 A7C C28 C27 sing Y N 42 A7C C29 C30 sing Y N 43 A7C "O3'" "C3'" sing N N 44 A7C C27 C26 doub Y N 45 A7C OP2 P sing N N 46 A7C C30 C31 doub Y N 47 A7C OP1 P sing N N 48 A7C C26 C31 sing Y N 49 A7C C26 N23 sing N N 50 A7C P "O5'" sing N N 51 A7C "C3'" "C2'" sing N N 52 A7C "C3'" "C4'" sing N N 53 A7C "O5'" "C5'" sing N N 54 A7C N23 C22 sing Y N 55 A7C N23 N24 sing Y N 56 A7C C22 C21 doub Y N 57 A7C "C2'" "O2'" sing N N 58 A7C "C2'" "C1'" sing N N 59 A7C "C5'" "C4'" sing N N 60 A7C "C4'" "O4'" sing N N 61 A7C N24 N25 doub Y N 62 A7C C21 N25 sing Y N 63 A7C C21 C7 sing N N 64 A7C N8 C7 doub Y N 65 A7C N8 N9 sing Y N 66 A7C C7 C5 sing Y N 67 A7C "C1'" N9 sing N N 68 A7C "C1'" "O4'" sing N N 69 A7C N9 C4 sing Y N 70 A7C C5 C4 doub Y N 71 A7C C5 C6 sing Y N 72 A7C N6 C6 sing N N 73 A7C C4 N3 sing Y N 74 A7C C6 N1 doub Y N 75 A7C N3 C2 doub Y N 76 A7C N1 C2 sing Y N 77 A7C "C1'" H1 sing N N 78 A7C C2 H2 sing N N 79 A7C "C2'" H3 sing N N 80 A7C C22 H4 sing N N 81 A7C C27 H5 sing N N 82 A7C C28 H6 sing N N 83 A7C "C3'" H7 sing N N 84 A7C C30 H8 sing N N 85 A7C C31 H9 sing N N 86 A7C "C4'" H10 sing N N 87 A7C "C5'" H11 sing N N 88 A7C "C5'" H12 sing N N 89 A7C N6 H13 sing N N 90 A7C N6 H14 sing N N 91 A7C "O2'" H15 sing N N 92 A7C "O3'" H16 sing N N 93 A7C OP1 H17 sing N N 94 A7C OP2 H18 sing N N 95 A7C P OP3 sing N N 96 A7C P H19 sing N N 97 A7C OP3 H20 sing N N 98 C OP3 P sing N N 99 C OP3 HOP3 sing N N 100 C P OP1 doub N N 101 C P OP2 sing N N 102 C P "O5'" sing N N 103 C OP2 HOP2 sing N N 104 C "O5'" "C5'" sing N N 105 C "C5'" "C4'" sing N N 106 C "C5'" "H5'" sing N N 107 C "C5'" "H5''" sing N N 108 C "C4'" "O4'" sing N N 109 C "C4'" "C3'" sing N N 110 C "C4'" "H4'" sing N N 111 C "O4'" "C1'" sing N N 112 C "C3'" "O3'" sing N N 113 C "C3'" "C2'" sing N N 114 C "C3'" "H3'" sing N N 115 C "O3'" "HO3'" sing N N 116 C "C2'" "O2'" sing N N 117 C "C2'" "C1'" sing N N 118 C "C2'" "H2'" sing N N 119 C "O2'" "HO2'" sing N N 120 C "C1'" N1 sing N N 121 C "C1'" "H1'" sing N N 122 C N1 C2 sing N N 123 C N1 C6 sing N N 124 C C2 O2 doub N N 125 C C2 N3 sing N N 126 C N3 C4 doub N N 127 C C4 N4 sing N N 128 C C4 C5 sing N N 129 C N4 H41 sing N N 130 C N4 H42 sing N N 131 C C5 C6 doub N N 132 C C5 H5 sing N N 133 C C6 H6 sing N N 134 G OP3 P sing N N 135 G OP3 HOP3 sing N N 136 G P OP1 doub N N 137 G P OP2 sing N N 138 G P "O5'" sing N N 139 G OP2 HOP2 sing N N 140 G "O5'" "C5'" sing N N 141 G "C5'" "C4'" sing N N 142 G "C5'" "H5'" sing N N 143 G "C5'" "H5''" sing N N 144 G "C4'" "O4'" sing N N 145 G "C4'" "C3'" sing N N 146 G "C4'" "H4'" sing N N 147 G "O4'" "C1'" sing N N 148 G "C3'" "O3'" sing N N 149 G "C3'" "C2'" sing N N 150 G "C3'" "H3'" sing N N 151 G "O3'" "HO3'" sing N N 152 G "C2'" "O2'" sing N N 153 G "C2'" "C1'" sing N N 154 G "C2'" "H2'" sing N N 155 G "O2'" "HO2'" sing N N 156 G "C1'" N9 sing N N 157 G "C1'" "H1'" sing N N 158 G N9 C8 sing Y N 159 G N9 C4 sing Y N 160 G C8 N7 doub Y N 161 G C8 H8 sing N N 162 G N7 C5 sing Y N 163 G C5 C6 sing N N 164 G C5 C4 doub Y N 165 G C6 O6 doub N N 166 G C6 N1 sing N N 167 G N1 C2 sing N N 168 G N1 H1 sing N N 169 G C2 N2 sing N N 170 G C2 N3 doub N N 171 G N2 H21 sing N N 172 G N2 H22 sing N N 173 G N3 C4 sing N N 174 HOH O H1 sing N N 175 HOH O H2 sing N N 176 U OP3 P sing N N 177 U OP3 HOP3 sing N N 178 U P OP1 doub N N 179 U P OP2 sing N N 180 U P "O5'" sing N N 181 U OP2 HOP2 sing N N 182 U "O5'" "C5'" sing N N 183 U "C5'" "C4'" sing N N 184 U "C5'" "H5'" sing N N 185 U "C5'" "H5''" sing N N 186 U "C4'" "O4'" sing N N 187 U "C4'" "C3'" sing N N 188 U "C4'" "H4'" sing N N 189 U "O4'" "C1'" sing N N 190 U "C3'" "O3'" sing N N 191 U "C3'" "C2'" sing N N 192 U "C3'" "H3'" sing N N 193 U "O3'" "HO3'" sing N N 194 U "C2'" "O2'" sing N N 195 U "C2'" "C1'" sing N N 196 U "C2'" "H2'" sing N N 197 U "O2'" "HO2'" sing N N 198 U "C1'" N1 sing N N 199 U "C1'" "H1'" sing N N 200 U N1 C2 sing N N 201 U N1 C6 sing N N 202 U C2 O2 doub N N 203 U C2 N3 sing N N 204 U N3 C4 sing N N 205 U N3 H3 sing N N 206 U C4 O4 doub N N 207 U C4 C5 sing N N 208 U C5 C6 doub N N 209 U C5 H5 sing N N 210 U C6 H6 sing N N 211 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6BGB 'double helix' 6BGB 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 16 1_555 -0.657 -0.071 0.252 -1.104 -6.100 2.748 1 A_G1:C16_B A 1 ? B 16 ? 19 1 1 A C 2 1_555 B G 15 1_555 0.198 -0.094 0.004 5.478 -16.312 3.734 2 A_C2:G15_B A 2 ? B 15 ? 19 1 1 A A 3 1_555 B U 14 1_555 0.394 -0.061 0.153 -1.123 -5.073 2.417 3 A_A3:U14_B A 3 ? B 14 ? 20 1 1 A G 4 1_555 B C 13 1_555 -0.035 -0.095 0.150 1.152 -11.391 4.547 4 A_G4:C13_B A 4 ? B 13 ? 19 1 1 A C 6 1_555 B G 11 1_555 0.365 -0.152 0.055 1.960 -16.048 3.102 5 A_C6:G11_B A 6 ? B 11 ? 19 1 1 A U 7 1_555 B A 10 1_555 -0.188 -0.196 -0.205 -2.358 -12.608 0.494 6 A_U7:A10_B A 7 ? B 10 ? 20 1 1 A U 8 1_555 B A 9 1_555 -0.389 -0.050 0.015 -0.024 -9.143 6.007 7 A_U8:A9_B A 8 ? B 9 ? 20 1 1 A A 9 1_555 B U 8 1_555 0.231 -0.087 0.047 0.340 -8.024 4.600 8 A_A9:U8_B A 9 ? B 8 ? 20 1 1 A A 10 1_555 B U 7 1_555 0.360 -0.138 -0.178 3.970 -11.831 0.266 9 A_A10:U7_B A 10 ? B 7 ? 20 1 1 A G 11 1_555 B C 6 1_555 -0.392 -0.143 -0.032 -2.674 -14.654 2.147 10 A_G11:C6_B A 11 ? B 6 ? 19 1 1 A C 13 1_555 B G 4 1_555 -0.112 -0.073 0.153 -2.925 -10.122 3.377 11 A_C13:G4_B A 13 ? B 4 ? 19 1 1 A U 14 1_555 B A 3 1_555 -0.395 -0.057 0.210 0.678 -5.397 3.095 12 A_U14:A3_B A 14 ? B 3 ? 20 1 1 A G 15 1_555 B C 2 1_555 -0.068 -0.133 0.000 -5.156 -17.316 3.007 13 A_G15:C2_B A 15 ? B 2 ? 19 1 1 A C 16 1_555 B G 1 1_555 0.640 -0.067 0.169 1.974 -6.510 4.222 14 A_C16:G1_B A 16 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 16 1_555 A C 2 1_555 B G 15 1_555 -0.276 -1.207 3.139 1.611 1.003 38.011 -1.972 0.619 3.094 1.538 -2.471 38.056 1 AA_G1C2:G15C16_BB A 1 ? B 16 ? A 2 ? B 15 ? 1 A C 2 1_555 B G 15 1_555 A A 3 1_555 B U 14 1_555 0.171 -1.309 3.269 -0.688 10.356 35.059 -3.441 -0.362 2.781 16.742 1.113 36.517 2 AA_C2A3:U14G15_BB A 2 ? B 15 ? A 3 ? B 14 ? 1 A A 3 1_555 B U 14 1_555 A G 4 1_555 B C 13 1_555 0.188 -1.597 3.141 1.290 8.921 27.131 -5.036 -0.121 2.506 18.384 -2.658 28.562 3 AA_A3G4:C13U14_BB A 3 ? B 14 ? A 4 ? B 13 ? 1 A G 4 1_555 B C 13 1_555 A C 6 1_555 B G 11 1_555 -0.153 -2.704 6.266 -0.832 19.876 63.867 -3.897 0.080 5.318 18.327 0.767 66.579 4 AA_G4C6:G11C13_BB A 4 ? B 13 ? A 6 ? B 11 ? 1 A C 6 1_555 B G 11 1_555 A U 7 1_555 B A 10 1_555 -0.055 -1.627 3.258 2.858 11.832 28.700 -5.072 0.595 2.399 22.626 -5.465 31.125 5 AA_C6U7:A10G11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A U 7 1_555 B A 10 1_555 A U 8 1_555 B A 9 1_555 0.509 -1.517 3.256 -0.966 6.406 28.930 -4.243 -1.189 2.843 12.623 1.904 29.631 6 AA_U7U8:A9A10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 A U 8 1_555 B A 9 1_555 A A 9 1_555 B U 8 1_555 -0.026 -1.255 3.213 -0.417 7.882 34.911 -3.114 -0.014 2.871 12.934 0.685 35.765 7 AA_U8A9:U8A9_BB A 8 ? B 9 ? A 9 ? B 8 ? 1 A A 9 1_555 B U 8 1_555 A A 10 1_555 B U 7 1_555 -0.443 -1.519 3.233 1.052 5.633 29.920 -3.954 1.041 2.888 10.785 -2.013 30.452 8 AA_A9A10:U7U8_BB A 9 ? B 8 ? A 10 ? B 7 ? 1 A A 10 1_555 B U 7 1_555 A G 11 1_555 B C 6 1_555 -0.017 -1.699 3.288 -2.409 13.335 27.776 -5.512 -0.386 2.249 25.915 4.683 30.847 9 AA_A10G11:C6U7_BB A 10 ? B 7 ? A 11 ? B 6 ? 1 A G 11 1_555 B C 6 1_555 A C 13 1_555 B G 4 1_555 0.096 -2.784 6.300 -0.589 19.036 63.874 -3.934 -0.131 5.374 17.586 0.544 66.364 10 AA_G11C13:G4C6_BB A 11 ? B 6 ? A 13 ? B 4 ? 1 A C 13 1_555 B G 4 1_555 A U 14 1_555 B A 3 1_555 -0.083 -1.637 3.123 -1.066 8.192 27.997 -4.832 -0.040 2.553 16.483 2.145 29.167 11 AA_C13U14:A3G4_BB A 13 ? B 4 ? A 14 ? B 3 ? 1 A U 14 1_555 B A 3 1_555 A G 15 1_555 B C 2 1_555 -0.239 -1.337 3.240 0.641 10.859 35.480 -3.462 0.456 2.723 17.323 -1.023 37.059 12 AA_U14G15:C2A3_BB A 14 ? B 3 ? A 15 ? B 2 ? 1 A G 15 1_555 B C 2 1_555 A C 16 1_555 B G 1 1_555 0.393 -1.199 3.132 -0.935 0.384 37.174 -1.929 -0.735 3.110 0.603 1.466 37.188 13 AA_G15C16:G1C2_BB A 15 ? B 2 ? A 16 ? B 1 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R01GM080784 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 6BGB _atom_sites.fract_transf_matrix[1][1] 0.013398 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007878 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023175 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023704 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_