HEADER SUGAR BINDING PROTEIN 27-OCT-17 6BGC TITLE THE CRYSTAL STRUCTURE OF THE W145A VARIANT OF TPMGLB-2 (TP0684) WITH TITLE 2 BOUND GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE/GALACTOSE-BINDING LIPOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TREPONEMA PALLIDUM (STRAIN NICHOLS); SOURCE 3 ORGANISM_TAXID: 243276; SOURCE 4 STRAIN: NICHOLS; SOURCE 5 GENE: MGLB, TPP38, TP_0684; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLUCOSE, SYPHILIS, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.A.BRAUTIGAM,M.V.NORGARD,R.K.DEKA REVDAT 7 04-OCT-23 6BGC 1 HETSYN REVDAT 6 29-JUL-20 6BGC 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 11-DEC-19 6BGC 1 REMARK REVDAT 4 21-AUG-19 6BGC 1 JRNL REVDAT 3 04-APR-18 6BGC 1 JRNL REVDAT 2 14-FEB-18 6BGC 1 REMARK REVDAT 1 31-JAN-18 6BGC 0 JRNL AUTH C.A.BRAUTIGAM,R.K.DEKA,W.Z.LIU,M.V.NORGARD JRNL TITL CRYSTAL STRUCTURES OF MGLB-2 (TP0684), A TOPOLOGICALLY JRNL TITL 2 VARIANT D-GLUCOSE-BINDING PROTEIN FROM TREPONEMA PALLIDUM, JRNL TITL 3 REVEAL A LIGAND-INDUCED CONFORMATIONAL CHANGE. JRNL REF PROTEIN SCI. V. 27 880 2018 JRNL REFN ESSN 1469-896X JRNL PMID 29318719 JRNL DOI 10.1002/PRO.3373 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 36128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7353 - 4.8916 0.92 2643 134 0.1584 0.1811 REMARK 3 2 4.8916 - 3.8837 0.94 2709 137 0.1371 0.1655 REMARK 3 3 3.8837 - 3.3931 0.91 2630 135 0.1679 0.2132 REMARK 3 4 3.3931 - 3.0830 0.94 2683 156 0.1851 0.2367 REMARK 3 5 3.0830 - 2.8621 0.95 2736 154 0.1965 0.2427 REMARK 3 6 2.8621 - 2.6934 0.89 2529 154 0.1976 0.2328 REMARK 3 7 2.6934 - 2.5585 0.92 2619 137 0.1974 0.2122 REMARK 3 8 2.5585 - 2.4471 0.93 2723 123 0.1945 0.2585 REMARK 3 9 2.4471 - 2.3529 0.94 2643 132 0.2073 0.2777 REMARK 3 10 2.3529 - 2.2718 0.90 2641 144 0.2096 0.2469 REMARK 3 11 2.2718 - 2.2007 0.88 2553 134 0.2147 0.2877 REMARK 3 12 2.2007 - 2.1378 0.92 2648 140 0.2141 0.2444 REMARK 3 13 2.1378 - 2.0816 0.90 2576 115 0.2252 0.2380 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5655 REMARK 3 ANGLE : 0.698 7660 REMARK 3 CHIRALITY : 0.027 860 REMARK 3 PLANARITY : 0.003 1009 REMARK 3 DIHEDRAL : 12.435 2039 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3491 24.8838 -85.1049 REMARK 3 T TENSOR REMARK 3 T11: 0.1690 T22: 0.2254 REMARK 3 T33: 0.1621 T12: -0.0286 REMARK 3 T13: -0.0621 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.7242 L22: 1.4456 REMARK 3 L33: 1.7078 L12: -0.5926 REMARK 3 L13: -0.6621 L23: -0.5640 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: -0.0863 S13: 0.0294 REMARK 3 S21: 0.3290 S22: -0.0688 S23: -0.0987 REMARK 3 S31: -0.0165 S32: 0.1649 S33: 0.0722 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5309 13.2929 -78.1916 REMARK 3 T TENSOR REMARK 3 T11: 0.2735 T22: 0.2934 REMARK 3 T33: 0.2220 T12: 0.0199 REMARK 3 T13: 0.0026 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.2786 L22: 1.6374 REMARK 3 L33: 1.8797 L12: -0.2446 REMARK 3 L13: -0.3192 L23: 0.2427 REMARK 3 S TENSOR REMARK 3 S11: -0.1347 S12: -0.2122 S13: -0.2307 REMARK 3 S21: 0.2866 S22: -0.0448 S23: -0.1818 REMARK 3 S31: 0.2102 S32: 0.3843 S33: 0.1670 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5001 5.6854 -89.2067 REMARK 3 T TENSOR REMARK 3 T11: 0.4181 T22: 0.2431 REMARK 3 T33: 0.2737 T12: 0.0386 REMARK 3 T13: 0.1055 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.2318 L22: 2.1927 REMARK 3 L33: 1.4487 L12: -0.4143 REMARK 3 L13: -0.0731 L23: -0.6674 REMARK 3 S TENSOR REMARK 3 S11: -0.2444 S12: 0.0472 S13: -0.3315 REMARK 3 S21: 0.0447 S22: -0.0085 S23: 0.0904 REMARK 3 S31: 0.6509 S32: 0.1520 S33: 0.2471 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7529 34.8835 -95.3677 REMARK 3 T TENSOR REMARK 3 T11: 0.1860 T22: 0.2496 REMARK 3 T33: 0.1889 T12: 0.0060 REMARK 3 T13: -0.0098 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 1.3439 L22: 2.4997 REMARK 3 L33: 1.2893 L12: 0.4989 REMARK 3 L13: -0.6852 L23: -0.5172 REMARK 3 S TENSOR REMARK 3 S11: 0.1039 S12: 0.1788 S13: 0.1902 REMARK 3 S21: -0.1132 S22: 0.0556 S23: 0.2966 REMARK 3 S31: -0.1071 S32: -0.1430 S33: -0.1187 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 271 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0113 27.9995-100.5950 REMARK 3 T TENSOR REMARK 3 T11: 0.2631 T22: 0.2845 REMARK 3 T33: 0.2437 T12: 0.0237 REMARK 3 T13: -0.0230 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.3270 L22: 1.5119 REMARK 3 L33: 0.9989 L12: -0.3277 REMARK 3 L13: 0.0523 L23: -0.3345 REMARK 3 S TENSOR REMARK 3 S11: 0.0750 S12: 0.1515 S13: 0.0148 REMARK 3 S21: -0.4106 S22: -0.0520 S23: 0.1613 REMARK 3 S31: 0.0727 S32: -0.1148 S33: -0.0524 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5191 34.9068-101.1126 REMARK 3 T TENSOR REMARK 3 T11: 0.2560 T22: 0.3001 REMARK 3 T33: 0.3224 T12: 0.0118 REMARK 3 T13: 0.0794 T23: 0.0833 REMARK 3 L TENSOR REMARK 3 L11: 1.0380 L22: 2.5003 REMARK 3 L33: 1.3648 L12: -0.0644 REMARK 3 L13: -0.4519 L23: -0.4272 REMARK 3 S TENSOR REMARK 3 S11: 0.2027 S12: 0.0863 S13: 0.1063 REMARK 3 S21: -0.4934 S22: -0.2928 S23: -0.6541 REMARK 3 S31: 0.0071 S32: 0.2873 S33: 0.0401 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1316 40.1839 -54.4527 REMARK 3 T TENSOR REMARK 3 T11: 0.2488 T22: 0.1907 REMARK 3 T33: 0.2250 T12: -0.0247 REMARK 3 T13: 0.0546 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.7066 L22: 1.5554 REMARK 3 L33: 1.0114 L12: 0.0816 REMARK 3 L13: 0.1292 L23: 0.6631 REMARK 3 S TENSOR REMARK 3 S11: -0.0548 S12: -0.0385 S13: -0.1218 REMARK 3 S21: 0.2364 S22: -0.1326 S23: 0.3400 REMARK 3 S31: 0.3308 S32: -0.0634 S33: 0.1772 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 65 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.8299 66.3796 -53.2009 REMARK 3 T TENSOR REMARK 3 T11: 0.1315 T22: 0.2100 REMARK 3 T33: 0.1836 T12: 0.0066 REMARK 3 T13: -0.0094 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.8435 L22: 2.0840 REMARK 3 L33: 1.1141 L12: -0.2722 REMARK 3 L13: -0.2409 L23: 0.0270 REMARK 3 S TENSOR REMARK 3 S11: 0.0243 S12: 0.0658 S13: 0.0086 REMARK 3 S21: -0.0345 S22: -0.1255 S23: 0.1924 REMARK 3 S31: -0.0438 S32: -0.1119 S33: 0.0867 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 182 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5379 46.1352 -53.9026 REMARK 3 T TENSOR REMARK 3 T11: 0.2459 T22: 0.2411 REMARK 3 T33: 0.2173 T12: 0.0338 REMARK 3 T13: -0.0507 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.3748 L22: 2.0464 REMARK 3 L33: 0.6928 L12: -0.6311 REMARK 3 L13: -0.0904 L23: 1.0249 REMARK 3 S TENSOR REMARK 3 S11: -0.0354 S12: -0.0076 S13: 0.0182 REMARK 3 S21: 0.3863 S22: 0.0631 S23: -0.2161 REMARK 3 S31: 0.2571 S32: 0.1137 S33: -0.0048 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 293 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8465 37.5081 -67.8883 REMARK 3 T TENSOR REMARK 3 T11: 0.2301 T22: 0.2229 REMARK 3 T33: 0.1867 T12: 0.0094 REMARK 3 T13: 0.0036 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.7868 L22: 1.9009 REMARK 3 L33: 1.3642 L12: -0.1851 REMARK 3 L13: -0.2671 L23: 0.7535 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: 0.0577 S13: -0.0097 REMARK 3 S21: -0.1644 S22: -0.1085 S23: 0.1420 REMARK 3 S31: 0.1056 S32: -0.1064 S33: 0.0795 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BGC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230840. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36146 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 39.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JX2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6.0 200 MM NACL 20% REMARK 280 (W/V) PEG 6,000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 ASP A -5 REMARK 465 LYS A -4 REMARK 465 ILE A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 GLU A 4 REMARK 465 ASN A 5 REMARK 465 LEU A 6 REMARK 465 TYR A 7 REMARK 465 PHE A 8 REMARK 465 GLN A 9 REMARK 465 THR A 284 REMARK 465 ARG A 285 REMARK 465 GLY A 286 REMARK 465 ALA A 287 REMARK 465 TYR A 378 REMARK 465 MET B -8 REMARK 465 GLY B -7 REMARK 465 SER B -6 REMARK 465 ASP B -5 REMARK 465 LYS B -4 REMARK 465 ILE B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 GLU B 4 REMARK 465 ASN B 5 REMARK 465 TYR B 378 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 19 -31.59 69.16 REMARK 500 ALA A 162 -118.57 56.63 REMARK 500 ARG A 187 109.55 -48.71 REMARK 500 ASP A 195 -31.80 131.84 REMARK 500 GLU A 208 -78.06 -96.53 REMARK 500 ILE A 245 -72.35 -118.25 REMARK 500 ASN A 279 23.75 -153.48 REMARK 500 PHE B 8 -68.72 -126.12 REMARK 500 GLN B 9 158.12 64.74 REMARK 500 ASN B 19 -35.27 68.17 REMARK 500 ALA B 162 -114.37 45.34 REMARK 500 ASP B 195 -28.95 133.05 REMARK 500 GLU B 208 -77.97 -92.97 REMARK 500 ILE B 245 -68.58 -127.78 REMARK 500 ASN B 279 15.16 -143.34 REMARK 500 ALA B 317 -53.10 -123.51 REMARK 500 GLN B 341 -51.32 -135.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 71 OD1 REMARK 620 2 ASN A 73 OD1 77.7 REMARK 620 3 ASP A 75 OD1 78.8 67.1 REMARK 620 4 ILE A 77 O 91.1 144.8 78.1 REMARK 620 5 ASP A 166 OD2 101.8 143.2 149.6 71.5 REMARK 620 6 HOH A 503 O 96.5 69.3 136.1 145.8 74.3 REMARK 620 7 HOH A 568 O 167.7 105.7 91.6 79.4 82.6 95.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 71 OD1 REMARK 620 2 ASN B 73 OD1 76.8 REMARK 620 3 ASP B 75 OD1 83.3 68.7 REMARK 620 4 ILE B 77 O 89.9 147.0 79.9 REMARK 620 5 ASP B 166 OD2 95.7 140.4 150.0 70.1 REMARK 620 6 HOH B 509 O 94.7 66.7 134.6 145.5 75.4 REMARK 620 7 HOH B 520 O 170.5 112.0 96.6 80.8 79.7 92.1 REMARK 620 N 1 2 3 4 5 6 DBREF 6BGC A 11 378 UNP Q08255 MGLB_TREPA 36 403 DBREF 6BGC B 11 378 UNP Q08255 MGLB_TREPA 36 403 SEQADV 6BGC MET A -8 UNP Q08255 EXPRESSION TAG SEQADV 6BGC GLY A -7 UNP Q08255 EXPRESSION TAG SEQADV 6BGC SER A -6 UNP Q08255 EXPRESSION TAG SEQADV 6BGC ASP A -5 UNP Q08255 EXPRESSION TAG SEQADV 6BGC LYS A -4 UNP Q08255 EXPRESSION TAG SEQADV 6BGC ILE A -3 UNP Q08255 EXPRESSION TAG SEQADV 6BGC HIS A -2 UNP Q08255 EXPRESSION TAG SEQADV 6BGC HIS A -1 UNP Q08255 EXPRESSION TAG SEQADV 6BGC HIS A 0 UNP Q08255 EXPRESSION TAG SEQADV 6BGC HIS A 1 UNP Q08255 EXPRESSION TAG SEQADV 6BGC HIS A 2 UNP Q08255 EXPRESSION TAG SEQADV 6BGC HIS A 3 UNP Q08255 EXPRESSION TAG SEQADV 6BGC GLU A 4 UNP Q08255 EXPRESSION TAG SEQADV 6BGC ASN A 5 UNP Q08255 EXPRESSION TAG SEQADV 6BGC LEU A 6 UNP Q08255 EXPRESSION TAG SEQADV 6BGC TYR A 7 UNP Q08255 EXPRESSION TAG SEQADV 6BGC PHE A 8 UNP Q08255 EXPRESSION TAG SEQADV 6BGC GLN A 9 UNP Q08255 EXPRESSION TAG SEQADV 6BGC GLY A 10 UNP Q08255 EXPRESSION TAG SEQADV 6BGC ALA A 145 UNP Q08255 TRP 170 ENGINEERED MUTATION SEQADV 6BGC MET B -8 UNP Q08255 EXPRESSION TAG SEQADV 6BGC GLY B -7 UNP Q08255 EXPRESSION TAG SEQADV 6BGC SER B -6 UNP Q08255 EXPRESSION TAG SEQADV 6BGC ASP B -5 UNP Q08255 EXPRESSION TAG SEQADV 6BGC LYS B -4 UNP Q08255 EXPRESSION TAG SEQADV 6BGC ILE B -3 UNP Q08255 EXPRESSION TAG SEQADV 6BGC HIS B -2 UNP Q08255 EXPRESSION TAG SEQADV 6BGC HIS B -1 UNP Q08255 EXPRESSION TAG SEQADV 6BGC HIS B 0 UNP Q08255 EXPRESSION TAG SEQADV 6BGC HIS B 1 UNP Q08255 EXPRESSION TAG SEQADV 6BGC HIS B 2 UNP Q08255 EXPRESSION TAG SEQADV 6BGC HIS B 3 UNP Q08255 EXPRESSION TAG SEQADV 6BGC GLU B 4 UNP Q08255 EXPRESSION TAG SEQADV 6BGC ASN B 5 UNP Q08255 EXPRESSION TAG SEQADV 6BGC LEU B 6 UNP Q08255 EXPRESSION TAG SEQADV 6BGC TYR B 7 UNP Q08255 EXPRESSION TAG SEQADV 6BGC PHE B 8 UNP Q08255 EXPRESSION TAG SEQADV 6BGC GLN B 9 UNP Q08255 EXPRESSION TAG SEQADV 6BGC GLY B 10 UNP Q08255 EXPRESSION TAG SEQADV 6BGC ALA B 145 UNP Q08255 TRP 170 ENGINEERED MUTATION SEQRES 1 A 387 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 387 ASN LEU TYR PHE GLN GLY ARG ASP LYS PRO LEU VAL PHE SEQRES 3 A 387 PHE ASN ARG GLN PRO SER ASP PRO LEU THR GLY LYS VAL SEQRES 4 A 387 ASP MET ALA ALA MET ASN TRP ASN ASP LYS THR TYR TYR SEQRES 5 A 387 VAL GLY PHE ASP ALA LYS PHE GLY GLY SER ILE GLN GLY SEQRES 6 A 387 LYS MET ILE LEU ASP PHE LEU ALA SER SER GLU SER SER SEQRES 7 A 387 VAL ASP ARG ASN GLY ASP GLY ILE ILE GLY TYR VAL LEU SEQRES 8 A 387 CYS ILE GLY ASP VAL GLY HIS ASN ASP SER LYS VAL ARG SEQRES 9 A 387 THR GLU GLY ILE ARG ARG ALA LEU GLY THR TRP THR GLY SEQRES 10 A 387 SER SER ASP PRO GLY GLN ALA LYS GLU GLY GLN ALA VAL SEQRES 11 A 387 VAL GLY GLY LYS SER TYR LYS VAL VAL GLU LEU GLU GLY SEQRES 12 A 387 LYS ALA MET THR GLY THR ASP GLY SER THR ALA ASN THR SEQRES 13 A 387 ASN SER ALA THR GLU SER MET GLY SER TRP VAL ALA LYS SEQRES 14 A 387 PHE ALA ASP LYS ILE ASP LEU VAL ILE SER ASN ASN ASP SEQRES 15 A 387 GLY MET ALA MET GLY CYS LEU GLN ALA SER ASN TYR PRO SEQRES 16 A 387 ARG GLY LEU PRO ILE PHE GLY TYR ASP ALA ASN ALA ASP SEQRES 17 A 387 ALA VAL GLU SER VAL GLY LYS GLY GLU LEU THR GLY THR SEQRES 18 A 387 VAL SER GLN ASN VAL ASP ALA GLN ALA VAL ALA VAL LEU SEQRES 19 A 387 GLN ILE ILE ARG ASN LEU LEU ASP GLY SER SER GLY GLU SEQRES 20 A 387 ASP VAL VAL ALA ASN GLY ILE SER ARG PRO ASP ALA HIS SEQRES 21 A 387 GLY ASN LYS ILE SER ALA PRO VAL GLN TYR TRP GLU ASP SEQRES 22 A 387 VAL LYS ALA ILE MET ALA ASP ASN SER GLU VAL THR SER SEQRES 23 A 387 ALA ASN TRP LYS GLU TYR THR ARG GLY ALA ARG ASP ALA SEQRES 24 A 387 GLY VAL ARG GLN VAL SER ALA PRO THR LYS LYS VAL LEU SEQRES 25 A 387 LEU THR VAL HIS ASN ALA SER ASN ASP PHE LEU ALA SER SEQRES 26 A 387 ALA TYR LEU PRO ALA LEU LYS HIS TYR ALA PRO LEU LEU SEQRES 27 A 387 ASN VAL ASP LEU THR VAL VAL GLN GLY ASP GLY GLN ASN SEQRES 28 A 387 GLU LEU SER CYS LEU ASP LYS PHE THR ASN LEU ASP MET SEQRES 29 A 387 PHE ASP ALA PHE ALA VAL ASN MET VAL LYS THR ASN SER SEQRES 30 A 387 GLY ALA ASP TYR THR ASP LYS LEU LYS TYR SEQRES 1 B 387 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 B 387 ASN LEU TYR PHE GLN GLY ARG ASP LYS PRO LEU VAL PHE SEQRES 3 B 387 PHE ASN ARG GLN PRO SER ASP PRO LEU THR GLY LYS VAL SEQRES 4 B 387 ASP MET ALA ALA MET ASN TRP ASN ASP LYS THR TYR TYR SEQRES 5 B 387 VAL GLY PHE ASP ALA LYS PHE GLY GLY SER ILE GLN GLY SEQRES 6 B 387 LYS MET ILE LEU ASP PHE LEU ALA SER SER GLU SER SER SEQRES 7 B 387 VAL ASP ARG ASN GLY ASP GLY ILE ILE GLY TYR VAL LEU SEQRES 8 B 387 CYS ILE GLY ASP VAL GLY HIS ASN ASP SER LYS VAL ARG SEQRES 9 B 387 THR GLU GLY ILE ARG ARG ALA LEU GLY THR TRP THR GLY SEQRES 10 B 387 SER SER ASP PRO GLY GLN ALA LYS GLU GLY GLN ALA VAL SEQRES 11 B 387 VAL GLY GLY LYS SER TYR LYS VAL VAL GLU LEU GLU GLY SEQRES 12 B 387 LYS ALA MET THR GLY THR ASP GLY SER THR ALA ASN THR SEQRES 13 B 387 ASN SER ALA THR GLU SER MET GLY SER TRP VAL ALA LYS SEQRES 14 B 387 PHE ALA ASP LYS ILE ASP LEU VAL ILE SER ASN ASN ASP SEQRES 15 B 387 GLY MET ALA MET GLY CYS LEU GLN ALA SER ASN TYR PRO SEQRES 16 B 387 ARG GLY LEU PRO ILE PHE GLY TYR ASP ALA ASN ALA ASP SEQRES 17 B 387 ALA VAL GLU SER VAL GLY LYS GLY GLU LEU THR GLY THR SEQRES 18 B 387 VAL SER GLN ASN VAL ASP ALA GLN ALA VAL ALA VAL LEU SEQRES 19 B 387 GLN ILE ILE ARG ASN LEU LEU ASP GLY SER SER GLY GLU SEQRES 20 B 387 ASP VAL VAL ALA ASN GLY ILE SER ARG PRO ASP ALA HIS SEQRES 21 B 387 GLY ASN LYS ILE SER ALA PRO VAL GLN TYR TRP GLU ASP SEQRES 22 B 387 VAL LYS ALA ILE MET ALA ASP ASN SER GLU VAL THR SER SEQRES 23 B 387 ALA ASN TRP LYS GLU TYR THR ARG GLY ALA ARG ASP ALA SEQRES 24 B 387 GLY VAL ARG GLN VAL SER ALA PRO THR LYS LYS VAL LEU SEQRES 25 B 387 LEU THR VAL HIS ASN ALA SER ASN ASP PHE LEU ALA SER SEQRES 26 B 387 ALA TYR LEU PRO ALA LEU LYS HIS TYR ALA PRO LEU LEU SEQRES 27 B 387 ASN VAL ASP LEU THR VAL VAL GLN GLY ASP GLY GLN ASN SEQRES 28 B 387 GLU LEU SER CYS LEU ASP LYS PHE THR ASN LEU ASP MET SEQRES 29 B 387 PHE ASP ALA PHE ALA VAL ASN MET VAL LYS THR ASN SER SEQRES 30 B 387 GLY ALA ASP TYR THR ASP LYS LEU LYS TYR HET BGC A 401 24 HET CA A 402 1 HET EDO A 403 10 HET BGC B 401 24 HET CA B 402 1 HET EDO B 403 10 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 BGC 2(C6 H12 O6) FORMUL 4 CA 2(CA 2+) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 9 HOH *213(H2 O) HELIX 1 AA1 ASP A 31 ASN A 36 1 6 HELIX 2 AA2 ASP A 47 SER A 66 1 20 HELIX 3 AA3 GLU A 67 ASP A 71 5 5 HELIX 4 AA4 HIS A 89 LEU A 103 1 15 HELIX 5 AA5 ASN A 146 ALA A 162 1 17 HELIX 6 AA6 ASN A 172 LEU A 180 1 9 HELIX 7 AA7 ASN A 197 LYS A 206 1 10 HELIX 8 AA8 ASN A 216 ASP A 233 1 18 HELIX 9 AA9 GLY A 237 ASN A 243 1 7 HELIX 10 AB1 GLU A 263 VAL A 265 5 3 HELIX 11 AB2 ASN A 279 TYR A 283 5 5 HELIX 12 AB3 ASN A 311 ALA A 317 1 7 HELIX 13 AB4 ALA A 317 LEU A 329 1 13 HELIX 14 AB5 GLU A 343 ASP A 348 1 6 HELIX 15 AB6 ASN A 352 PHE A 356 5 5 HELIX 16 AB7 SER A 368 LEU A 376 1 9 HELIX 17 AB8 GLN B 9 LYS B 13 5 5 HELIX 18 AB9 ASP B 31 ASN B 36 1 6 HELIX 19 AC1 ASP B 47 SER B 65 1 19 HELIX 20 AC2 GLU B 67 ASP B 71 5 5 HELIX 21 AC3 HIS B 89 LEU B 103 1 15 HELIX 22 AC4 ASN B 146 PHE B 161 1 16 HELIX 23 AC5 ASN B 172 LEU B 180 1 9 HELIX 24 AC6 ASN B 197 LYS B 206 1 10 HELIX 25 AC7 ASN B 216 ASP B 233 1 18 HELIX 26 AC8 GLU B 238 ASN B 243 1 6 HELIX 27 AC9 GLU B 263 VAL B 265 5 3 HELIX 28 AD1 ASN B 279 TYR B 283 5 5 HELIX 29 AD2 ASN B 311 ALA B 317 1 7 HELIX 30 AD3 ALA B 317 LEU B 329 1 13 HELIX 31 AD4 GLU B 343 ASP B 348 1 6 HELIX 32 AD5 ASN B 352 PHE B 356 5 5 HELIX 33 AD6 SER B 368 LEU B 376 1 9 SHEET 1 AA1 7 VAL A 259 TRP A 262 0 SHEET 2 AA1 7 ALA A 267 ALA A 270 -1 O ALA A 267 N TRP A 262 SHEET 3 AA1 7 THR A 41 PHE A 46 1 N TYR A 43 O ILE A 268 SHEET 4 AA1 7 LEU A 15 PHE A 18 1 N PHE A 17 O TYR A 42 SHEET 5 AA1 7 ALA A 358 VAL A 361 1 O PHE A 359 N VAL A 16 SHEET 6 AA1 7 LYS A 300 VAL A 306 1 N THR A 305 O ALA A 360 SHEET 7 AA1 7 VAL A 331 GLN A 337 1 O THR A 334 N LEU A 304 SHEET 1 AA2 5 GLY A 118 VAL A 122 0 SHEET 2 AA2 5 LYS A 125 ALA A 136 -1 O VAL A 129 N GLY A 118 SHEET 3 AA2 5 ILE A 77 ILE A 84 1 N ILE A 78 O LYS A 128 SHEET 4 AA2 5 ILE A 165 SER A 170 1 O ASP A 166 N GLY A 79 SHEET 5 AA2 5 ILE A 191 PHE A 192 1 O PHE A 192 N VAL A 168 SHEET 1 AA3 2 GLY A 211 SER A 214 0 SHEET 2 AA3 2 SER A 273 THR A 276 -1 O SER A 273 N SER A 214 SHEET 1 AA4 7 VAL B 259 TRP B 262 0 SHEET 2 AA4 7 ALA B 267 ALA B 270 -1 O ALA B 267 N TRP B 262 SHEET 3 AA4 7 THR B 41 PHE B 46 1 N TYR B 43 O ILE B 268 SHEET 4 AA4 7 LEU B 15 PHE B 18 1 N PHE B 17 O TYR B 42 SHEET 5 AA4 7 ALA B 358 VAL B 361 1 O PHE B 359 N VAL B 16 SHEET 6 AA4 7 LYS B 300 VAL B 306 1 N THR B 305 O ALA B 360 SHEET 7 AA4 7 VAL B 331 GLN B 337 1 O ASP B 332 N LYS B 300 SHEET 1 AA5 5 GLY B 118 VAL B 122 0 SHEET 2 AA5 5 LYS B 125 ALA B 136 -1 O VAL B 129 N GLY B 118 SHEET 3 AA5 5 ILE B 77 ILE B 84 1 N ILE B 78 O LYS B 128 SHEET 4 AA5 5 ILE B 165 SER B 170 1 O ILE B 169 N CYS B 83 SHEET 5 AA5 5 ILE B 191 PHE B 192 1 O PHE B 192 N VAL B 168 SHEET 1 AA6 2 THR B 212 SER B 214 0 SHEET 2 AA6 2 SER B 273 VAL B 275 -1 O VAL B 275 N THR B 212 LINK OD1 ASP A 71 CA CA A 402 1555 1555 2.27 LINK OD1 ASN A 73 CA CA A 402 1555 1555 2.47 LINK OD1 ASP A 75 CA CA A 402 1555 1555 2.51 LINK O ILE A 77 CA CA A 402 1555 1555 2.35 LINK OD2 ASP A 166 CA CA A 402 1555 1555 2.58 LINK CA CA A 402 O HOH A 503 1555 1555 2.46 LINK CA CA A 402 O HOH A 568 1555 1555 2.48 LINK OD1 ASP B 71 CA CA B 402 1555 1555 2.35 LINK OD1 ASN B 73 CA CA B 402 1555 1555 2.46 LINK OD1 ASP B 75 CA CA B 402 1555 1555 2.50 LINK O ILE B 77 CA CA B 402 1555 1555 2.32 LINK OD2 ASP B 166 CA CA B 402 1555 1555 2.60 LINK CA CA B 402 O HOH B 509 1555 1555 2.46 LINK CA CA B 402 O HOH B 520 1555 1555 2.42 CRYST1 42.257 61.592 70.350 80.22 77.58 72.72 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023665 -0.007362 -0.004401 0.00000 SCALE2 0.000000 0.017003 -0.001947 0.00000 SCALE3 0.000000 0.000000 0.014650 0.00000