HEADER HYDROLASE 30-OCT-17 6BH7 TITLE PHOSPHOTRIESTERASE VARIANT R18+254S CAVEAT 6BH7 HIS A 230 HAS WRONG CHIRALITY AT ATOM CA KCX G 169 HAS WRONG CAVEAT 2 6BH7 CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTRIESTERASE; COMPND 3 CHAIN: A, G; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVUNDIMONAS DIMINUTA; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS DIMINUTA; SOURCE 4 ORGANISM_TAXID: 293; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PHOSPHOTRIESTERASE, ORGANOPHOSPHATE HYDROLASE, EPISTASIS, DIRECTED KEYWDS 2 EVOLUTION, LABORATORY EVOLUTION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.M.MITON,E.C.CAMPBELL,C.J.JACKSON,N.TOKURIKI REVDAT 3 15-NOV-23 6BH7 1 REMARK REVDAT 2 04-OCT-23 6BH7 1 REMARK LINK REVDAT 1 23-JAN-19 6BH7 0 JRNL AUTH C.M.MITON,E.C.CAMPBELL,C.J.JACKSON,N.TOKURIKI JRNL TITL PHOSPHOTRIESTERASE VARIANT R18+254S JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 129148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 6399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0484 - 4.3454 1.00 4322 290 0.1600 0.1659 REMARK 3 2 4.3454 - 3.4509 1.00 4226 198 0.1513 0.1817 REMARK 3 3 3.4509 - 3.0152 1.00 4193 193 0.1642 0.1989 REMARK 3 4 3.0152 - 2.7397 1.00 4150 215 0.1582 0.1821 REMARK 3 5 2.7397 - 2.5435 1.00 4139 198 0.1584 0.1774 REMARK 3 6 2.5435 - 2.3936 1.00 4147 190 0.1469 0.1646 REMARK 3 7 2.3936 - 2.2738 1.00 4086 235 0.1479 0.1812 REMARK 3 8 2.2738 - 2.1748 1.00 4135 175 0.1482 0.1968 REMARK 3 9 2.1748 - 2.0911 1.00 4086 204 0.1604 0.1844 REMARK 3 10 2.0911 - 2.0190 1.00 4147 185 0.1620 0.1986 REMARK 3 11 2.0190 - 1.9559 1.00 4089 180 0.1681 0.2149 REMARK 3 12 1.9559 - 1.9000 1.00 4113 179 0.1609 0.2150 REMARK 3 13 1.9000 - 1.8500 1.00 4101 221 0.1596 0.1941 REMARK 3 14 1.8500 - 1.8048 1.00 4049 246 0.1610 0.2351 REMARK 3 15 1.8048 - 1.7638 1.00 4056 208 0.1619 0.2086 REMARK 3 16 1.7638 - 1.7263 1.00 4051 245 0.1647 0.2237 REMARK 3 17 1.7263 - 1.6918 1.00 4006 243 0.1642 0.2034 REMARK 3 18 1.6918 - 1.6598 1.00 4103 203 0.1680 0.2141 REMARK 3 19 1.6598 - 1.6302 1.00 4034 238 0.1752 0.2324 REMARK 3 20 1.6302 - 1.6026 1.00 4022 215 0.1853 0.2454 REMARK 3 21 1.6026 - 1.5767 1.00 4035 231 0.1883 0.2631 REMARK 3 22 1.5767 - 1.5525 1.00 4111 188 0.2034 0.2628 REMARK 3 23 1.5525 - 1.5296 1.00 4032 217 0.2079 0.2624 REMARK 3 24 1.5296 - 1.5081 1.00 4108 160 0.2108 0.2408 REMARK 3 25 1.5081 - 1.4877 1.00 4011 238 0.2258 0.2669 REMARK 3 26 1.4877 - 1.4684 1.00 4031 232 0.2406 0.2951 REMARK 3 27 1.4684 - 1.4500 1.00 4017 240 0.2456 0.2904 REMARK 3 28 1.4500 - 1.4326 1.00 3998 241 0.2657 0.3200 REMARK 3 29 1.4326 - 1.4159 1.00 4102 182 0.2713 0.3262 REMARK 3 30 1.4159 - 1.4000 1.00 4049 209 0.2935 0.3054 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 6333 REMARK 3 ANGLE : 1.842 8676 REMARK 3 CHIRALITY : 0.120 1011 REMARK 3 PLANARITY : 0.007 1135 REMARK 3 DIHEDRAL : 14.577 2342 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BH7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 142836 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 29.042 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4CPC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NACACODYLATE, 10% 2-METHANE-2,4 REMARK 280 -PENTANEDIOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.83650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.00600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.83650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.00600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -206.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 465 ASP A 35 REMARK 465 PRO A 256 REMARK 465 HIS A 257 REMARK 465 SER A 258 REMARK 465 ALA A 259 REMARK 465 ILE A 260 REMARK 465 GLY A 261 REMARK 465 LEU A 262 REMARK 465 GLU A 263 REMARK 465 ASP A 264 REMARK 465 ASN A 265 REMARK 465 ALA A 266 REMARK 465 SER A 267 REMARK 465 ALA A 268 REMARK 465 THR A 269 REMARK 465 ALA A 270 REMARK 465 PHE A 271 REMARK 465 MET A 272 REMARK 465 GLY A 273 REMARK 465 SER A 274 REMARK 465 ARG A 275 REMARK 465 ALA A 364 REMARK 465 SER A 365 REMARK 465 MET G 33 REMARK 465 GLY G 34 REMARK 465 ARG G 363 REMARK 465 ALA G 364 REMARK 465 SER G 365 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 232 CG OD1 OD2 REMARK 470 ILE A 255 CG1 CG2 CD1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 PHE A 51 N CA C O CB CG CD1 REMARK 480 PHE A 51 CD2 CE1 CE2 CZ REMARK 480 THR A 52 N CA C O CB OG1 CG2 REMARK 480 LEU A 53 N CA C O CB CG CD1 REMARK 480 LEU A 53 CD2 REMARK 480 THR A 54 N CA C O CB OG1 CG2 REMARK 480 HIS A 55 N CA C O CB CG ND1 REMARK 480 HIS A 55 CD2 CE1 NE2 REMARK 480 VAL A 99 N CA C O CB CG1 CG2 REMARK 480 ASP A 100 N CA C O CB CG OD1 REMARK 480 ASP A 100 OD2 REMARK 480 VAL A 101 N CA C O CB CG1 CG2 REMARK 480 VAL A 130 N CA C O CB CG1 CG2 REMARK 480 TRP A 131 N CA C O CB CG CD1 REMARK 480 TRP A 131 CD2 NE1 CE2 CE3 CZ2 CZ3 CH2 REMARK 480 LEU A 132 N CA C O CB CG CD1 REMARK 480 LEU A 132 CD2 REMARK 480 ASP A 133 N CA C O CB CG OD1 REMARK 480 ASP A 133 OD2 REMARK 480 LEU A 136 N CA C O CB CG CD1 REMARK 480 LEU A 136 CD2 REMARK 480 SER A 137 N CA C O CB OG REMARK 480 ILE A 138 N CA C O CB CG1 CG2 REMARK 480 ILE A 138 CD1 REMARK 480 SER G 61 N CA C O CB OG REMARK 480 SER G 62 N CA C O CB OG REMARK 480 ALA G 63 N CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 309 HH22 ARG G 141 1.40 REMARK 500 HE2 HIS A 201 O HOH A 2501 1.49 REMARK 500 HH22 ARG A 41 O HOH A 2503 1.55 REMARK 500 O SER A 307 HH21 ARG G 141 1.59 REMARK 500 O HOH A 2546 O HOH G 2572 2.00 REMARK 500 OD2 ASP A 253 O HOH A 2501 2.08 REMARK 500 O SER A 307 NH2 ARG G 141 2.15 REMARK 500 OG SER G 62 O HOH G 2501 2.16 REMARK 500 NE2 HIS A 201 O HOH A 2501 2.18 REMARK 500 OD2 ASP A 253 O HOH A 2501 2.18 REMARK 500 O TYR A 309 NH2 ARG G 141 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -149.82 -148.21 REMARK 500 TRP A 69 58.55 -145.28 REMARK 500 ARG A 108 112.79 -38.09 REMARK 500 THR A 128 -169.65 -112.83 REMARK 500 TRP A 131 -151.78 -92.58 REMARK 500 TRP A 131 -151.85 -94.47 REMARK 500 GLU A 159 -131.50 56.37 REMARK 500 GLU A 159 -131.50 52.54 REMARK 500 VAL A 176 112.86 87.70 REMARK 500 ARG A 207 52.42 -68.80 REMARK 500 HIS A 230 61.68 -35.09 REMARK 500 SER A 254 133.76 -177.79 REMARK 500 SER A 254 119.57 124.96 REMARK 500 TYR A 309 -150.43 -131.90 REMARK 500 ARG A 331 -52.47 -120.82 REMARK 500 VAL A 351 -59.17 -120.27 REMARK 500 SER G 61 -150.14 -148.69 REMARK 500 SER G 61 -144.27 -152.59 REMARK 500 VAL G 101 31.17 -92.88 REMARK 500 ASP G 121 18.16 82.54 REMARK 500 THR G 128 -165.38 -112.01 REMARK 500 THR G 128 -168.28 -111.57 REMARK 500 TRP G 131 -147.69 -98.53 REMARK 500 TRP G 131 -147.69 -92.99 REMARK 500 GLU G 159 -131.18 50.16 REMARK 500 GLU G 159 -131.18 53.45 REMARK 500 SER G 205 131.96 -29.56 REMARK 500 SER G 205 -56.16 96.18 REMARK 500 GLN G 206 6.47 44.46 REMARK 500 ARG G 207 38.74 33.54 REMARK 500 TYR G 309 -150.01 -129.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 229 HIS A 230 -121.71 REMARK 500 ASP A 253 SER A 254 133.65 REMARK 500 ALA G 203 GLY G 204 -147.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 HIS A 55 NE2 5.2 REMARK 620 3 HIS A 57 NE2 112.4 117.3 REMARK 620 4 HIS A 57 NE2 117.0 121.9 4.6 REMARK 620 5 KCX A 169 OQ2 98.4 96.4 88.4 88.4 REMARK 620 6 ASP A 301 OD1 84.9 86.8 90.5 90.2 176.7 REMARK 620 7 HOH A2532 O 107.7 102.9 139.8 135.2 88.4 90.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 169 OQ1 REMARK 620 2 HIS A 201 ND1 127.1 REMARK 620 3 HOH A2532 O 88.9 130.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G2401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS G 55 NE2 REMARK 620 2 HIS G 57 NE2 118.3 REMARK 620 3 KCX G 169 OQ2 99.2 91.3 REMARK 620 4 ASP G 301 OD1 82.0 86.5 177.7 REMARK 620 5 CAC G2403 O2 114.9 123.0 99.2 82.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G2402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX G 169 OQ1 REMARK 620 2 HIS G 201 ND1 111.0 REMARK 620 3 HIS G 230 NE2 111.9 101.6 REMARK 620 4 CAC G2403 O1 107.1 96.0 127.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 2401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 2402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 2403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 2405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 2401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN G 2402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC G 2403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD G 2404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD G 2405 DBREF1 6BH7 A 33 365 UNP A0A060GYS7_BREDI DBREF2 6BH7 A A0A060GYS7 1 333 DBREF1 6BH7 G 33 365 UNP A0A060GYS7_BREDI DBREF2 6BH7 G A0A060GYS7 1 333 SEQADV 6BH7 SER A 254 UNP A0A060GYS ARG 222 CONFLICT SEQADV 6BH7 SER G 254 UNP A0A060GYS ARG 222 CONFLICT SEQRES 1 A 333 MET GLY ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR SEQRES 2 A 333 ILE SER GLU VAL GLY PHE THR LEU THR HIS GLU HIS ILE SEQRES 3 A 333 CYS GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU SEQRES 4 A 333 PHE PHE GLY SER ARG GLU ALA LEU VAL GLU LYS ALA VAL SEQRES 5 A 333 ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR SEQRES 6 A 333 ILE VAL ASP VAL SER THR PHE ASP LEU GLY ARG ASP VAL SEQRES 7 A 333 ARG LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS SEQRES 8 A 333 ILE VAL ALA ALA THR GLY VAL TRP LEU ASP PRO PRO LEU SEQRES 9 A 333 SER ILE ARG MET ARG SER VAL GLU GLU LEU THR GLN PHE SEQRES 10 A 333 PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY SEQRES 11 A 333 ILE ARG ALA GLY ILE ILE KCX VAL ALA ILE THR GLY LYS SEQRES 12 A 333 VAL THR PRO PHE GLN GLU LEU VAL LEU ARG ALA ALA ALA SEQRES 13 A 333 ARG ALA SER LEU ALA THR GLY VAL PRO VAL ILE THR HIS SEQRES 14 A 333 THR ALA GLY SER GLN ARG GLY GLY GLU GLN GLN ALA ALA SEQRES 15 A 333 ILE PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS SEQRES 16 A 333 ILE GLY HIS SER ASP GLU THR ASP ASP LEU SER TYR LEU SEQRES 17 A 333 THR ALA LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP SEQRES 18 A 333 SER ILE PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SEQRES 19 A 333 SER ALA THR ALA PHE MET GLY SER ARG SER TRP GLN THR SEQRES 20 A 333 ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR SEQRES 21 A 333 MET LYS GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY SEQRES 22 A 333 ILE SER SER TYR VAL THR ASN PHE MET ASP VAL MET ASP SEQRES 23 A 333 SER VAL ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG SEQRES 24 A 333 VAL ILE PRO PHE LEU ARG GLU LYS GLY ILE PRO GLN GLU SEQRES 25 A 333 THR LEU ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE SEQRES 26 A 333 LEU SER PRO THR LEU ARG ALA SER SEQRES 1 G 333 MET GLY ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR SEQRES 2 G 333 ILE SER GLU VAL GLY PHE THR LEU THR HIS GLU HIS ILE SEQRES 3 G 333 CYS GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU SEQRES 4 G 333 PHE PHE GLY SER ARG GLU ALA LEU VAL GLU LYS ALA VAL SEQRES 5 G 333 ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR SEQRES 6 G 333 ILE VAL ASP VAL SER THR PHE ASP LEU GLY ARG ASP VAL SEQRES 7 G 333 ARG LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS SEQRES 8 G 333 ILE VAL ALA ALA THR GLY VAL TRP LEU ASP PRO PRO LEU SEQRES 9 G 333 SER ILE ARG MET ARG SER VAL GLU GLU LEU THR GLN PHE SEQRES 10 G 333 PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY SEQRES 11 G 333 ILE ARG ALA GLY ILE ILE KCX VAL ALA ILE THR GLY LYS SEQRES 12 G 333 VAL THR PRO PHE GLN GLU LEU VAL LEU ARG ALA ALA ALA SEQRES 13 G 333 ARG ALA SER LEU ALA THR GLY VAL PRO VAL ILE THR HIS SEQRES 14 G 333 THR ALA GLY SER GLN ARG GLY GLY GLU GLN GLN ALA ALA SEQRES 15 G 333 ILE PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS SEQRES 16 G 333 ILE GLY HIS SER ASP GLU THR ASP ASP LEU SER TYR LEU SEQRES 17 G 333 THR ALA LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP SEQRES 18 G 333 SER ILE PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SEQRES 19 G 333 SER ALA THR ALA PHE MET GLY SER ARG SER TRP GLN THR SEQRES 20 G 333 ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR SEQRES 21 G 333 MET LYS GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY SEQRES 22 G 333 ILE SER SER TYR VAL THR ASN PHE MET ASP VAL MET ASP SEQRES 23 G 333 SER VAL ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG SEQRES 24 G 333 VAL ILE PRO PHE LEU ARG GLU LYS GLY ILE PRO GLN GLU SEQRES 25 G 333 THR LEU ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE SEQRES 26 G 333 LEU SER PRO THR LEU ARG ALA SER MODRES 6BH7 KCX A 169 LYS MODIFIED RESIDUE MODRES 6BH7 KCX G 169 LYS MODIFIED RESIDUE HET KCX A 169 22 HET KCX G 169 22 HET ZN A2401 1 HET ZN A2402 1 HET MPD A2403 22 HET MPD A2404 22 HET MPD A2405 22 HET ZN G2401 1 HET ZN G2402 1 HET CAC G2403 5 HET MPD G2404 22 HET MPD G2405 22 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM ZN ZINC ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM CAC CACODYLATE ION HETSYN CAC DIMETHYLARSINATE FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 ZN 4(ZN 2+) FORMUL 5 MPD 5(C6 H14 O2) FORMUL 10 CAC C2 H6 AS O2 1- FORMUL 13 HOH *304(H2 O) HELIX 1 AA1 THR A 45 GLY A 50 1 6 HELIX 2 AA2 GLY A 64 TRP A 69 1 6 HELIX 3 AA3 PRO A 70 GLY A 74 5 5 HELIX 4 AA4 SER A 75 ALA A 93 1 19 HELIX 5 AA5 THR A 103 GLY A 107 5 5 HELIX 6 AA6 ARG A 111 ASP A 121 1 11 HELIX 7 AA7 PRO A 135 MET A 140 1 6 HELIX 8 AA8 SER A 142 TYR A 156 1 15 HELIX 9 AA9 THR A 177 GLY A 195 1 19 HELIX 10 AB1 ARG A 207 GLU A 219 1 13 HELIX 11 AB2 SER A 222 SER A 224 5 3 HELIX 12 AB3 HIS A 230 THR A 234 5 5 HELIX 13 AB4 ASP A 236 ARG A 246 1 11 HELIX 14 AB5 TRP A 277 GLN A 290 1 14 HELIX 15 AB6 TYR A 292 LYS A 294 5 3 HELIX 16 AB7 ASN A 312 ASN A 321 1 10 HELIX 17 AB8 ASP A 323 MET A 325 5 3 HELIX 18 AB9 ALA A 326 ARG A 331 1 6 HELIX 19 AC1 ARG A 331 LYS A 339 1 9 HELIX 20 AC2 PRO A 342 VAL A 351 1 10 HELIX 21 AC3 VAL A 351 SER A 359 1 9 HELIX 22 AC4 THR G 45 GLY G 50 1 6 HELIX 23 AC5 GLY G 64 TRP G 69 1 6 HELIX 24 AC6 PRO G 70 GLY G 74 5 5 HELIX 25 AC7 SER G 75 ALA G 93 1 19 HELIX 26 AC8 THR G 103 GLY G 107 5 5 HELIX 27 AC9 ASP G 109 ASP G 121 1 13 HELIX 28 AD1 PRO G 135 MET G 140 1 6 HELIX 29 AD2 SER G 142 TYR G 156 1 15 HELIX 30 AD3 THR G 177 GLY G 195 1 19 HELIX 31 AD4 ARG G 207 GLU G 219 1 13 HELIX 32 AD5 SER G 222 SER G 224 5 3 HELIX 33 AD6 HIS G 230 THR G 234 5 5 HELIX 34 AD7 ASP G 236 ARG G 246 1 11 HELIX 35 AD8 ASN G 265 GLY G 273 1 9 HELIX 36 AD9 SER G 276 GLN G 290 1 15 HELIX 37 AE1 TYR G 292 LYS G 294 5 3 HELIX 38 AE2 ASN G 312 ASN G 321 1 10 HELIX 39 AE3 ASP G 323 MET G 325 5 3 HELIX 40 AE4 ALA G 326 ARG G 331 1 6 HELIX 41 AE5 ARG G 331 LYS G 339 1 9 HELIX 42 AE6 PRO G 342 VAL G 351 1 10 HELIX 43 AE7 VAL G 351 SER G 359 1 9 SHEET 1 AA1 2 ILE A 37 THR A 39 0 SHEET 2 AA1 2 GLY A 42 ILE A 44 -1 O ILE A 44 N ILE A 37 SHEET 1 AA2 2 THR A 97 VAL A 99 0 SHEET 2 AA2 2 HIS A 123 VAL A 125 1 O HIS A 123 N ILE A 98 SHEET 1 AA3 6 ALA A 127 VAL A 130 0 SHEET 2 AA3 6 ILE A 167 ILE A 172 1 O KCX A 169 N THR A 128 SHEET 3 AA3 6 VAL A 198 THR A 202 1 O ILE A 199 N ILE A 168 SHEET 4 AA3 6 VAL A 226 ILE A 228 1 O CYS A 227 N VAL A 198 SHEET 5 AA3 6 LEU A 249 LEU A 252 1 O LEU A 249 N ILE A 228 SHEET 6 AA3 6 ILE A 296 VAL A 298 1 O LEU A 297 N LEU A 252 SHEET 1 AA4 8 THR G 52 GLU G 56 0 SHEET 2 AA4 8 THR G 97 ASP G 100 1 O VAL G 99 N LEU G 53 SHEET 3 AA4 8 HIS G 123 GLY G 129 1 O HIS G 123 N ILE G 98 SHEET 4 AA4 8 ILE G 167 ALA G 171 1 O KCX G 169 N THR G 128 SHEET 5 AA4 8 VAL G 198 HIS G 201 1 O ILE G 199 N ILE G 168 SHEET 6 AA4 8 VAL G 226 ILE G 228 1 O CYS G 227 N THR G 200 SHEET 7 AA4 8 LEU G 249 LEU G 252 1 O LEU G 249 N VAL G 226 SHEET 8 AA4 8 ILE G 296 VAL G 298 1 O LEU G 297 N LEU G 252 SHEET 1 AA5 2 CYS G 59 GLY G 60 0 SHEET 2 AA5 2 GLY G 305 ILE G 306 1 O GLY G 305 N GLY G 60 LINK C ILE A 168 N KCX A 169 1555 1555 1.33 LINK C KCX A 169 N AVAL A 170 1555 1555 1.33 LINK C KCX A 169 N CVAL A 170 1555 1555 1.35 LINK C ILE G 168 N KCX G 169 1555 1555 1.33 LINK C KCX G 169 N VAL G 170 1555 1555 1.34 LINK NE2BHIS A 55 ZN ZN A2401 1555 1555 2.08 LINK NE2CHIS A 55 ZN ZN A2401 1555 1555 2.30 LINK NE2AHIS A 57 ZN ZN A2401 1555 1555 2.06 LINK NE2BHIS A 57 ZN ZN A2401 1555 1555 2.02 LINK OQ2 KCX A 169 ZN ZN A2401 1555 1555 2.11 LINK OQ1 KCX A 169 ZN ZN A2402 1555 1555 1.90 LINK ND1 HIS A 201 ZN ZN A2402 1555 1555 2.07 LINK OD1 ASP A 301 ZN ZN A2401 1555 1555 2.17 LINK ZN ZN A2401 O HOH A2532 1555 1555 2.01 LINK ZN ZN A2402 O HOH A2532 1555 1555 2.28 LINK NE2 HIS G 55 ZN ZN G2401 1555 1555 2.05 LINK NE2 HIS G 57 ZN ZN G2401 1555 1555 2.03 LINK OQ2 KCX G 169 ZN ZN G2401 1555 1555 2.09 LINK OQ1 KCX G 169 ZN ZN G2402 1555 1555 1.91 LINK ND1 HIS G 201 ZN ZN G2402 1555 1555 2.06 LINK NE2 HIS G 230 ZN ZN G2402 1555 1555 2.03 LINK OD1 ASP G 301 ZN ZN G2401 1555 1555 2.28 LINK ZN ZN G2401 O2 CAC G2403 1555 1555 1.84 LINK ZN ZN G2402 O1 CAC G2403 1555 1555 1.93 CISPEP 1 GLY G 204 SER G 205 0 2.89 CISPEP 2 GLY G 204 SER G 205 0 -13.33 CISPEP 3 SER G 205 GLN G 206 0 -9.18 SITE 1 AC1 5 HIS A 55 HIS A 57 KCX A 169 ASP A 301 SITE 2 AC1 5 HOH A2532 SITE 1 AC2 3 KCX A 169 HIS A 201 HOH A2532 SITE 1 AC3 4 LEU A 106 TRP A 131 ASP A 301 ILE A 306 SITE 1 AC4 1 GLN A 343 SITE 1 AC5 5 HIS G 55 HIS G 57 KCX G 169 ASP G 301 SITE 2 AC5 5 CAC G2403 SITE 1 AC6 4 KCX G 169 HIS G 201 HIS G 230 CAC G2403 SITE 1 AC7 10 HIS G 55 HIS G 57 TRP G 131 KCX G 169 SITE 2 AC7 10 HIS G 201 HIS G 230 PHE G 271 ASP G 301 SITE 3 AC7 10 ZN G2401 ZN G2402 SITE 1 AC8 5 GLU G 71 PHE G 72 PHE G 73 ASN G 312 SITE 2 AC8 5 HOH G2567 SITE 1 AC9 3 PHE G 51 GLN G 343 THR G 350 CRYST1 85.673 86.012 88.676 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011672 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011626 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011277 0.00000