HEADER HYDROLASE 30-OCT-17 6BH8 TITLE CRYSTAL STRUCTURE OF ZMPSTE24 IN COMPLEX WITH PHOSPHORAMIDON COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAAX PRENYL PROTEASE 1 HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FARNESYLATED PROTEINS-CONVERTING ENZYME 1,FACE-1,PRENYL COMPND 5 PROTEIN-SPECIFIC ENDOPROTEASE 1,ZINC METALLOPROTEINASE STE24 HOMOLOG; COMPND 6 EC: 3.4.24.84; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZMPSTE24, FACE1, STE24; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BJ5460; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSGP47 KEYWDS INTEGRAL MEMBRANE PROTEIN, ZINC METALLOPROTEASE, INHIBITOR COMPLEX, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.R.GOBLIRSCH,B.T.ARACHEA,M.C.WIENER REVDAT 4 04-OCT-23 6BH8 1 LINK REVDAT 3 01-JAN-20 6BH8 1 REMARK REVDAT 2 20-FEB-19 6BH8 1 REMARK REVDAT 1 15-AUG-18 6BH8 0 JRNL AUTH B.R.GOBLIRSCH,B.T.ARACHEA,D.J.COUNCELL,M.C.WIENER JRNL TITL PHOSPHORAMIDON INHIBITS THE INTEGRAL MEMBRANE PROTEIN ZINC JRNL TITL 2 METALLOPROTEASE ZMPSTE24. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 74 739 2018 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 30082509 JRNL DOI 10.1107/S2059798318003431 REMARK 2 REMARK 2 RESOLUTION. 3.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 19241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.341 REMARK 3 R VALUE (WORKING SET) : 0.338 REMARK 3 FREE R VALUE : 0.371 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0311 - 9.2571 0.88 1159 127 0.3615 0.3624 REMARK 3 2 9.2571 - 7.3568 0.97 1246 137 0.3141 0.3023 REMARK 3 3 7.3568 - 6.4295 0.99 1257 139 0.3212 0.3874 REMARK 3 4 6.4295 - 5.8428 0.99 1251 138 0.3136 0.3790 REMARK 3 5 5.8428 - 5.4247 1.00 1264 140 0.3225 0.3586 REMARK 3 6 5.4247 - 5.1052 0.99 1256 138 0.3157 0.3105 REMARK 3 7 5.1052 - 4.8498 0.99 1240 136 0.3067 0.3706 REMARK 3 8 4.8498 - 4.6389 0.99 1247 138 0.3066 0.3508 REMARK 3 9 4.6389 - 4.4605 0.98 1224 135 0.3273 0.4386 REMARK 3 10 4.4605 - 4.3067 0.99 1260 138 0.3466 0.4452 REMARK 3 11 4.3067 - 4.1721 0.99 1247 139 0.3706 0.4007 REMARK 3 12 4.1721 - 4.0529 0.99 1226 134 0.3687 0.3824 REMARK 3 13 4.0529 - 3.9463 0.98 1225 134 0.3892 0.3895 REMARK 3 14 3.9463 - 3.8500 0.98 1230 136 0.3837 0.4488 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.870 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 45.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 111.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 143.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 6691 REMARK 3 ANGLE : 1.154 9045 REMARK 3 CHIRALITY : 0.055 1003 REMARK 3 PLANARITY : 0.008 1089 REMARK 3 DIHEDRAL : 15.096 2379 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BH8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1000230237. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR, SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19383 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.850 REMARK 200 RESOLUTION RANGE LOW (A) : 47.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.51050 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 2.29100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5SYT REMARK 200 REMARK 200 REMARK: LONG NEEDLE-LIKE MORPHOLOGY REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: GLYCEROL, AMMONIUM SULFATE, PEG 3350, REMARK 280 HEPES/NAOH PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.33050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 MET A 3 REMARK 465 TRP A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 ASP A 8 REMARK 465 ALA A 9 REMARK 465 LEU A 10 REMARK 465 TRP A 11 REMARK 465 GLU A 12 REMARK 465 MET A 13 REMARK 465 PRO A 14 REMARK 465 ALA A 15 REMARK 465 SER A 61 REMARK 465 GLU A 62 REMARK 465 THR A 63 REMARK 465 PHE A 64 REMARK 465 GLU A 65 REMARK 465 LYS A 66 REMARK 465 SER A 67 REMARK 465 ARG A 68 REMARK 465 LEU A 69 REMARK 465 TYR A 70 REMARK 465 GLN A 71 REMARK 465 LEU A 72 REMARK 465 ASP A 73 REMARK 465 LYS A 74 REMARK 465 SER A 75 REMARK 465 THR A 76 REMARK 465 PHE A 77 REMARK 465 SER A 78 REMARK 465 PHE A 79 REMARK 465 TRP A 80 REMARK 465 SER A 81 REMARK 465 GLY A 82 REMARK 465 LEU A 83 REMARK 465 TYR A 84 REMARK 465 SER A 85 REMARK 465 GLU A 86 REMARK 465 THR A 87 REMARK 465 GLU A 88 REMARK 465 GLY A 89 REMARK 465 THR A 90 REMARK 465 LEU A 91 REMARK 465 ILE A 92 REMARK 465 LEU A 93 REMARK 465 LEU A 94 REMARK 465 PHE A 95 REMARK 465 GLY A 96 REMARK 465 GLY A 97 REMARK 465 ILE A 98 REMARK 465 PRO A 99 REMARK 465 TYR A 269 REMARK 465 GLY A 270 REMARK 465 PHE A 271 REMARK 465 PHE A 272 REMARK 465 LYS A 273 REMARK 465 ASN A 274 REMARK 465 LEU A 284 REMARK 465 GLU A 285 REMARK 465 GLU A 286 REMARK 465 TYR A 287 REMARK 465 SER A 288 REMARK 465 VAL A 289 REMARK 465 LEU A 290 REMARK 465 ASN A 291 REMARK 465 LYS A 292 REMARK 465 ASP A 293 REMARK 465 ILE A 294 REMARK 465 GLN A 295 REMARK 465 GLU A 296 REMARK 465 ASP A 297 REMARK 465 SER A 298 REMARK 465 GLY A 299 REMARK 465 MET A 300 REMARK 465 GLU A 301 REMARK 465 PRO A 302 REMARK 465 ARG A 303 REMARK 465 ASN A 304 REMARK 465 GLU A 305 REMARK 465 GLU A 306 REMARK 465 GLU A 307 REMARK 465 GLY A 308 REMARK 465 ASN A 309 REMARK 465 SER A 310 REMARK 465 GLU A 311 REMARK 465 GLU A 312 REMARK 465 ILE A 313 REMARK 465 LYS A 314 REMARK 465 ALA A 315 REMARK 465 LYS A 316 REMARK 465 VAL A 317 REMARK 465 LYS A 318 REMARK 465 ASN A 319 REMARK 465 LYS A 320 REMARK 465 LYS A 321 REMARK 465 GLN A 322 REMARK 465 THR A 471 REMARK 465 MET A 472 REMARK 465 LYS A 473 REMARK 465 GLN A 474 REMARK 465 HIS A 475 REMARK 465 SER A 476 REMARK 465 GLY A 477 REMARK 465 LEU A 478 REMARK 465 GLU A 479 REMARK 465 VAL A 480 REMARK 465 LEU A 481 REMARK 465 PHE A 482 REMARK 465 GLN A 483 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 MET B 3 REMARK 465 TRP B 4 REMARK 465 ALA B 5 REMARK 465 SER B 6 REMARK 465 LEU B 7 REMARK 465 ASP B 8 REMARK 465 ALA B 9 REMARK 465 LEU B 10 REMARK 465 TRP B 11 REMARK 465 GLU B 12 REMARK 465 MET B 13 REMARK 465 PRO B 14 REMARK 465 ALA B 15 REMARK 465 TYR B 269 REMARK 465 GLY B 270 REMARK 465 PHE B 271 REMARK 465 PHE B 272 REMARK 465 LYS B 273 REMARK 465 ASN B 274 REMARK 465 LEU B 284 REMARK 465 GLU B 285 REMARK 465 GLU B 286 REMARK 465 TYR B 287 REMARK 465 SER B 288 REMARK 465 VAL B 289 REMARK 465 LEU B 290 REMARK 465 ASN B 291 REMARK 465 LYS B 292 REMARK 465 ASP B 293 REMARK 465 ILE B 294 REMARK 465 GLN B 295 REMARK 465 GLU B 296 REMARK 465 ASP B 297 REMARK 465 SER B 298 REMARK 465 GLY B 299 REMARK 465 MET B 300 REMARK 465 GLU B 301 REMARK 465 PRO B 302 REMARK 465 ARG B 303 REMARK 465 ASN B 304 REMARK 465 GLU B 305 REMARK 465 GLU B 306 REMARK 465 GLU B 307 REMARK 465 GLY B 308 REMARK 465 ASN B 309 REMARK 465 SER B 310 REMARK 465 GLU B 311 REMARK 465 GLU B 312 REMARK 465 ILE B 313 REMARK 465 LYS B 314 REMARK 465 ALA B 315 REMARK 465 LYS B 316 REMARK 465 VAL B 317 REMARK 465 LYS B 318 REMARK 465 ASN B 319 REMARK 465 LYS B 320 REMARK 465 LYS B 321 REMARK 465 GLN B 322 REMARK 465 THR B 471 REMARK 465 MET B 472 REMARK 465 LYS B 473 REMARK 465 GLN B 474 REMARK 465 HIS B 475 REMARK 465 SER B 476 REMARK 465 GLY B 477 REMARK 465 LEU B 478 REMARK 465 GLU B 479 REMARK 465 VAL B 480 REMARK 465 LEU B 481 REMARK 465 PHE B 482 REMARK 465 GLN B 483 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 192 CA PHE A 196 1.89 REMARK 500 O GLY B 192 CA PHE B 196 1.89 REMARK 500 O GLY A 192 N PHE A 196 1.95 REMARK 500 O GLY B 192 N PHE B 196 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 54 5.79 -66.43 REMARK 500 THR A 250 -69.21 -105.92 REMARK 500 ASN A 265 127.83 -173.24 REMARK 500 PHE A 394 -61.28 -95.69 REMARK 500 GLU B 54 5.78 -66.42 REMARK 500 THR B 250 -69.03 -105.99 REMARK 500 ASN B 265 127.86 -176.10 REMARK 500 PHE B 394 -61.33 -95.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 335 NE2 REMARK 620 2 HIS A 339 NE2 108.3 REMARK 620 3 GLU A 415 OE2 109.2 92.7 REMARK 620 4 RDF A 502 O2P 93.8 83.8 156.6 REMARK 620 5 RDF A 502 O1P 111.8 135.9 90.9 76.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 335 NE2 REMARK 620 2 HIS B 339 NE2 108.3 REMARK 620 3 GLU B 415 OE2 109.3 92.6 REMARK 620 4 RDF B 502 O1P 111.9 135.9 90.9 REMARK 620 5 RDF B 502 O2P 93.7 83.8 156.6 76.2 REMARK 620 N 1 2 3 4 REMARK 630 REMARK 630 MOLECULE TYPE: GLYCOPEPTIDE ENZYME INHIBITOR REMARK 630 MOLECULE NAME: N-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L- REMARK 630 LEUCYL-L-TRYPTOPHAN REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 RDF A 502 REMARK 630 RDF B 502 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: RHA LEU TRP REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8E B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for PHOSPHORAMIDON chain A REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for PHOSPHORAMIDON chain B REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5SYT RELATED DB: PDB REMARK 900 RELATED ID: 4AW6 RELATED DB: PDB REMARK 900 RELATED ID: 2YPT RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DEPOSITED SEQUENCE IS DERIVED FROM NCBI GENBANK ENTRY BC037283.1 DBREF 6BH8 A 1 475 UNP O75844 FACE1_HUMAN 1 475 DBREF 6BH8 B 1 475 UNP O75844 FACE1_HUMAN 1 475 SEQADV 6BH8 ALA A 137 UNP O75844 THR 137 VARIANT SEQADV 6BH8 SER A 476 UNP O75844 EXPRESSION TAG SEQADV 6BH8 GLY A 477 UNP O75844 EXPRESSION TAG SEQADV 6BH8 LEU A 478 UNP O75844 EXPRESSION TAG SEQADV 6BH8 GLU A 479 UNP O75844 EXPRESSION TAG SEQADV 6BH8 VAL A 480 UNP O75844 EXPRESSION TAG SEQADV 6BH8 LEU A 481 UNP O75844 EXPRESSION TAG SEQADV 6BH8 PHE A 482 UNP O75844 EXPRESSION TAG SEQADV 6BH8 GLN A 483 UNP O75844 EXPRESSION TAG SEQADV 6BH8 ALA B 137 UNP O75844 THR 137 VARIANT SEQADV 6BH8 SER B 476 UNP O75844 EXPRESSION TAG SEQADV 6BH8 GLY B 477 UNP O75844 EXPRESSION TAG SEQADV 6BH8 LEU B 478 UNP O75844 EXPRESSION TAG SEQADV 6BH8 GLU B 479 UNP O75844 EXPRESSION TAG SEQADV 6BH8 VAL B 480 UNP O75844 EXPRESSION TAG SEQADV 6BH8 LEU B 481 UNP O75844 EXPRESSION TAG SEQADV 6BH8 PHE B 482 UNP O75844 EXPRESSION TAG SEQADV 6BH8 GLN B 483 UNP O75844 EXPRESSION TAG SEQRES 1 A 483 MET GLY MET TRP ALA SER LEU ASP ALA LEU TRP GLU MET SEQRES 2 A 483 PRO ALA GLU LYS ARG ILE PHE GLY ALA VAL LEU LEU PHE SEQRES 3 A 483 SER TRP THR VAL TYR LEU TRP GLU THR PHE LEU ALA GLN SEQRES 4 A 483 ARG GLN ARG ARG ILE TYR LYS THR THR THR HIS VAL PRO SEQRES 5 A 483 PRO GLU LEU GLY GLN ILE MET ASP SER GLU THR PHE GLU SEQRES 6 A 483 LYS SER ARG LEU TYR GLN LEU ASP LYS SER THR PHE SER SEQRES 7 A 483 PHE TRP SER GLY LEU TYR SER GLU THR GLU GLY THR LEU SEQRES 8 A 483 ILE LEU LEU PHE GLY GLY ILE PRO TYR LEU TRP ARG LEU SEQRES 9 A 483 SER GLY ARG PHE CYS GLY TYR ALA GLY PHE GLY PRO GLU SEQRES 10 A 483 TYR GLU ILE THR GLN SER LEU VAL PHE LEU LEU LEU ALA SEQRES 11 A 483 THR LEU PHE SER ALA LEU ALA GLY LEU PRO TRP SER LEU SEQRES 12 A 483 TYR ASN THR PHE VAL ILE GLU GLU LYS HIS GLY PHE ASN SEQRES 13 A 483 GLN GLN THR LEU GLY PHE PHE MET LYS ASP ALA ILE LYS SEQRES 14 A 483 LYS PHE VAL VAL THR GLN CYS ILE LEU LEU PRO VAL SER SEQRES 15 A 483 SER LEU LEU LEU TYR ILE ILE LYS ILE GLY GLY ASP TYR SEQRES 16 A 483 PHE PHE ILE TYR ALA TRP LEU PHE THR LEU VAL VAL SER SEQRES 17 A 483 LEU VAL LEU VAL THR ILE TYR ALA ASP TYR ILE ALA PRO SEQRES 18 A 483 LEU PHE ASP LYS PHE THR PRO LEU PRO GLU GLY LYS LEU SEQRES 19 A 483 LYS GLU GLU ILE GLU VAL MET ALA LYS SER ILE ASP PHE SEQRES 20 A 483 PRO LEU THR LYS VAL TYR VAL VAL GLU GLY SER LYS ARG SEQRES 21 A 483 SER SER HIS SER ASN ALA TYR PHE TYR GLY PHE PHE LYS SEQRES 22 A 483 ASN LYS ARG ILE VAL LEU PHE ASP THR LEU LEU GLU GLU SEQRES 23 A 483 TYR SER VAL LEU ASN LYS ASP ILE GLN GLU ASP SER GLY SEQRES 24 A 483 MET GLU PRO ARG ASN GLU GLU GLU GLY ASN SER GLU GLU SEQRES 25 A 483 ILE LYS ALA LYS VAL LYS ASN LYS LYS GLN GLY CYS LYS SEQRES 26 A 483 ASN GLU GLU VAL LEU ALA VAL LEU GLY HIS GLU LEU GLY SEQRES 27 A 483 HIS TRP LYS LEU GLY HIS THR VAL LYS ASN ILE ILE ILE SEQRES 28 A 483 SER GLN MET ASN SER PHE LEU CYS PHE PHE LEU PHE ALA SEQRES 29 A 483 VAL LEU ILE GLY ARG LYS GLU LEU PHE ALA ALA PHE GLY SEQRES 30 A 483 PHE TYR ASP SER GLN PRO THR LEU ILE GLY LEU LEU ILE SEQRES 31 A 483 ILE PHE GLN PHE ILE PHE SER PRO TYR ASN GLU VAL LEU SEQRES 32 A 483 SER PHE CYS LEU THR VAL LEU SER ARG ARG PHE GLU PHE SEQRES 33 A 483 GLN ALA ASP ALA PHE ALA LYS LYS LEU GLY LYS ALA LYS SEQRES 34 A 483 ASP LEU TYR SER ALA LEU ILE LYS LEU ASN LYS ASP ASN SEQRES 35 A 483 LEU GLY PHE PRO VAL SER ASP TRP LEU PHE SER MET TRP SEQRES 36 A 483 HIS TYR SER HIS PRO PRO LEU LEU GLU ARG LEU GLN ALA SEQRES 37 A 483 LEU LYS THR MET LYS GLN HIS SER GLY LEU GLU VAL LEU SEQRES 38 A 483 PHE GLN SEQRES 1 B 483 MET GLY MET TRP ALA SER LEU ASP ALA LEU TRP GLU MET SEQRES 2 B 483 PRO ALA GLU LYS ARG ILE PHE GLY ALA VAL LEU LEU PHE SEQRES 3 B 483 SER TRP THR VAL TYR LEU TRP GLU THR PHE LEU ALA GLN SEQRES 4 B 483 ARG GLN ARG ARG ILE TYR LYS THR THR THR HIS VAL PRO SEQRES 5 B 483 PRO GLU LEU GLY GLN ILE MET ASP SER GLU THR PHE GLU SEQRES 6 B 483 LYS SER ARG LEU TYR GLN LEU ASP LYS SER THR PHE SER SEQRES 7 B 483 PHE TRP SER GLY LEU TYR SER GLU THR GLU GLY THR LEU SEQRES 8 B 483 ILE LEU LEU PHE GLY GLY ILE PRO TYR LEU TRP ARG LEU SEQRES 9 B 483 SER GLY ARG PHE CYS GLY TYR ALA GLY PHE GLY PRO GLU SEQRES 10 B 483 TYR GLU ILE THR GLN SER LEU VAL PHE LEU LEU LEU ALA SEQRES 11 B 483 THR LEU PHE SER ALA LEU ALA GLY LEU PRO TRP SER LEU SEQRES 12 B 483 TYR ASN THR PHE VAL ILE GLU GLU LYS HIS GLY PHE ASN SEQRES 13 B 483 GLN GLN THR LEU GLY PHE PHE MET LYS ASP ALA ILE LYS SEQRES 14 B 483 LYS PHE VAL VAL THR GLN CYS ILE LEU LEU PRO VAL SER SEQRES 15 B 483 SER LEU LEU LEU TYR ILE ILE LYS ILE GLY GLY ASP TYR SEQRES 16 B 483 PHE PHE ILE TYR ALA TRP LEU PHE THR LEU VAL VAL SER SEQRES 17 B 483 LEU VAL LEU VAL THR ILE TYR ALA ASP TYR ILE ALA PRO SEQRES 18 B 483 LEU PHE ASP LYS PHE THR PRO LEU PRO GLU GLY LYS LEU SEQRES 19 B 483 LYS GLU GLU ILE GLU VAL MET ALA LYS SER ILE ASP PHE SEQRES 20 B 483 PRO LEU THR LYS VAL TYR VAL VAL GLU GLY SER LYS ARG SEQRES 21 B 483 SER SER HIS SER ASN ALA TYR PHE TYR GLY PHE PHE LYS SEQRES 22 B 483 ASN LYS ARG ILE VAL LEU PHE ASP THR LEU LEU GLU GLU SEQRES 23 B 483 TYR SER VAL LEU ASN LYS ASP ILE GLN GLU ASP SER GLY SEQRES 24 B 483 MET GLU PRO ARG ASN GLU GLU GLU GLY ASN SER GLU GLU SEQRES 25 B 483 ILE LYS ALA LYS VAL LYS ASN LYS LYS GLN GLY CYS LYS SEQRES 26 B 483 ASN GLU GLU VAL LEU ALA VAL LEU GLY HIS GLU LEU GLY SEQRES 27 B 483 HIS TRP LYS LEU GLY HIS THR VAL LYS ASN ILE ILE ILE SEQRES 28 B 483 SER GLN MET ASN SER PHE LEU CYS PHE PHE LEU PHE ALA SEQRES 29 B 483 VAL LEU ILE GLY ARG LYS GLU LEU PHE ALA ALA PHE GLY SEQRES 30 B 483 PHE TYR ASP SER GLN PRO THR LEU ILE GLY LEU LEU ILE SEQRES 31 B 483 ILE PHE GLN PHE ILE PHE SER PRO TYR ASN GLU VAL LEU SEQRES 32 B 483 SER PHE CYS LEU THR VAL LEU SER ARG ARG PHE GLU PHE SEQRES 33 B 483 GLN ALA ASP ALA PHE ALA LYS LYS LEU GLY LYS ALA LYS SEQRES 34 B 483 ASP LEU TYR SER ALA LEU ILE LYS LEU ASN LYS ASP ASN SEQRES 35 B 483 LEU GLY PHE PRO VAL SER ASP TRP LEU PHE SER MET TRP SEQRES 36 B 483 HIS TYR SER HIS PRO PRO LEU LEU GLU ARG LEU GLN ALA SEQRES 37 B 483 LEU LYS THR MET LYS GLN HIS SER GLY LEU GLU VAL LEU SEQRES 38 B 483 PHE GLN HET ZN A 501 1 HET RDF A 502 37 HET C8E A 503 55 HET ZN B 501 1 HET RDF B 502 37 HET C8E B 503 55 HETNAM ZN ZINC ION HETNAM RDF N-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L- HETNAM 2 RDF LEUCYL-L-TRYPTOPHAN HETNAM C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE HETSYN RDF PHOSPHORAMIDON FORMUL 3 ZN 2(ZN 2+) FORMUL 4 RDF 2(C23 H34 N3 O10 P) FORMUL 5 C8E 2(C16 H34 O5) HELIX 1 AA1 GLU A 16 THR A 48 1 33 HELIX 2 AA2 PRO A 52 GLY A 56 5 5 HELIX 3 AA3 LEU A 101 ALA A 112 1 12 HELIX 4 AA4 TYR A 118 VAL A 148 1 31 HELIX 5 AA5 VAL A 148 HIS A 153 1 6 HELIX 6 AA6 THR A 159 GLY A 192 1 34 HELIX 7 AA7 TYR A 195 ILE A 219 1 25 HELIX 8 AA8 ILE A 219 ASP A 224 1 6 HELIX 9 AA9 GLY A 232 ILE A 245 1 14 HELIX 10 AB1 GLY A 257 ARG A 260 5 4 HELIX 11 AB2 LYS A 325 LEU A 342 1 18 HELIX 12 AB3 GLY A 343 ILE A 367 1 25 HELIX 13 AB4 ARG A 369 ALA A 375 1 7 HELIX 14 AB5 PRO A 383 PHE A 394 1 12 HELIX 15 AB6 PHE A 396 LEU A 425 1 30 HELIX 16 AB7 LYS A 427 ASN A 442 1 16 HELIX 17 AB8 ASP A 449 TYR A 457 1 9 HELIX 18 AB9 PRO A 461 LYS A 470 1 10 HELIX 19 AC1 LYS B 17 THR B 48 1 32 HELIX 20 AC2 PRO B 52 GLY B 56 5 5 HELIX 21 AC3 ASP B 60 PHE B 95 1 36 HELIX 22 AC4 GLY B 96 ALA B 112 1 17 HELIX 23 AC5 TYR B 118 VAL B 148 1 31 HELIX 24 AC6 VAL B 148 HIS B 153 1 6 HELIX 25 AC7 THR B 159 GLY B 192 1 34 HELIX 26 AC8 TYR B 195 ILE B 219 1 25 HELIX 27 AC9 ILE B 219 ASP B 224 1 6 HELIX 28 AD1 GLY B 232 ILE B 245 1 14 HELIX 29 AD2 GLY B 257 ARG B 260 5 4 HELIX 30 AD3 LYS B 325 LEU B 342 1 18 HELIX 31 AD4 GLY B 343 ILE B 367 1 25 HELIX 32 AD5 ARG B 369 ALA B 375 1 7 HELIX 33 AD6 PRO B 383 PHE B 394 1 12 HELIX 34 AD7 PHE B 396 LEU B 425 1 30 HELIX 35 AD8 LYS B 427 ASN B 442 1 16 HELIX 36 AD9 ASP B 449 TYR B 457 1 9 HELIX 37 AE1 PRO B 461 LYS B 470 1 10 SHEET 1 AA1 3 PHE A 226 PRO A 228 0 SHEET 2 AA1 3 VAL A 252 VAL A 255 -1 O VAL A 254 N THR A 227 SHEET 3 AA1 3 ILE A 277 PHE A 280 1 O ILE A 277 N TYR A 253 SHEET 1 AA2 3 PHE B 226 PRO B 228 0 SHEET 2 AA2 3 VAL B 252 VAL B 255 -1 O VAL B 254 N THR B 227 SHEET 3 AA2 3 ILE B 277 PHE B 280 1 O ILE B 277 N TYR B 253 LINK NE2 HIS A 335 ZN ZN A 501 1555 1555 2.04 LINK NE2 HIS A 339 ZN ZN A 501 1555 1555 2.02 LINK OE2 GLU A 415 ZN ZN A 501 1555 1555 1.77 LINK ZN ZN A 501 O2P RDF A 502 1555 1555 2.11 LINK ZN ZN A 501 O1P RDF A 502 1555 1555 1.77 LINK NE2 HIS B 335 ZN ZN B 501 1555 1555 2.04 LINK NE2 HIS B 339 ZN ZN B 501 1555 1555 2.02 LINK OE2 GLU B 415 ZN ZN B 501 1555 1555 1.77 LINK ZN ZN B 501 O1P RDF B 502 1555 1555 1.77 LINK ZN ZN B 501 O2P RDF B 502 1555 1555 2.11 CISPEP 1 GLY A 193 ASP A 194 0 4.24 CISPEP 2 GLY B 193 ASP B 194 0 4.25 SITE 1 AC1 4 HIS A 335 HIS A 339 GLU A 415 RDF A 502 SITE 1 AC2 4 HIS B 335 HIS B 339 GLU B 415 RDF B 502 SITE 1 AC3 2 GLU B 86 THR B 87 SITE 1 AC4 13 SER A 264 ASN A 265 VAL A 332 HIS A 335 SITE 2 AC4 13 GLU A 336 HIS A 339 GLU A 415 LEU A 435 SITE 3 AC4 13 LEU A 438 ASN A 442 HIS A 459 ARG A 465 SITE 4 AC4 13 ZN A 501 SITE 1 AC5 13 SER B 264 ASN B 265 VAL B 332 HIS B 335 SITE 2 AC5 13 GLU B 336 HIS B 339 GLU B 415 LEU B 435 SITE 3 AC5 13 LEU B 438 ASN B 442 HIS B 459 ARG B 465 SITE 4 AC5 13 ZN B 501 CRYST1 93.329 84.661 132.017 90.00 96.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010715 0.000000 0.001175 0.00000 SCALE2 0.000000 0.011812 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007620 0.00000