HEADER ISOMERASE 30-OCT-17 6BHF TITLE CRYSTAL STRUCTURE OF THE PETIDYLPROLYL CIS,TRANS-ISOMERASE FROM TITLE 2 HELICOBACTER PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE HP_0175; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPIASE HP_0175,ROTAMASE HP_0175; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN ATCC 700392 / SOURCE 3 26695); SOURCE 4 ORGANISM_COMMON: CAMPYLOBACTER PYLORI; SOURCE 5 ORGANISM_TAXID: 85962; SOURCE 6 STRAIN: ATCC 700392 / 26695; SOURCE 7 GENE: HP_0175; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PARVULIN PPIASE TLR4-AGONIST, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.YASEEN,G.F.AUDETTE REVDAT 4 04-OCT-23 6BHF 1 REMARK REVDAT 3 08-JAN-20 6BHF 1 COMPND REVDAT 2 10-OCT-18 6BHF 1 COMPND JRNL REVDAT 1 19-SEP-18 6BHF 0 JRNL AUTH A.YASEEN,G.F.AUDETTE JRNL TITL STRUCTURAL FLEXIBILITY IN THE HELICOBACTER PYLORI JRNL TITL 2 PEPTIDYL-PROLYL CIS,TRANS-ISOMERASE HP0175 IS ACHIEVED JRNL TITL 3 THROUGH AN EXTENSION OF THE CHAPERONE HELICES. JRNL REF J. STRUCT. BIOL. V. 204 261 2018 JRNL REFN ESSN 1095-8657 JRNL PMID 30179659 JRNL DOI 10.1016/J.JSB.2018.08.017 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 959 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.14 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1305 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.4140 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.4280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1996 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.59000 REMARK 3 B22 (A**2) : 1.59000 REMARK 3 B33 (A**2) : -5.15000 REMARK 3 B12 (A**2) : 0.79000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.204 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.195 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.219 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.040 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2037 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1934 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2736 ; 2.121 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4526 ; 1.122 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 249 ; 6.577 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;36.275 ;26.061 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 406 ;18.955 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.450 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 300 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2228 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 368 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 996 ; 2.998 ; 4.701 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 995 ; 2.996 ; 4.700 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1242 ; 4.261 ; 7.039 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1243 ; 4.260 ; 7.040 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1041 ; 3.882 ; 5.216 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1041 ; 3.882 ; 5.216 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1492 ; 6.054 ; 7.601 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2368 ; 7.506 ;56.469 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2362 ; 7.508 ;56.457 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 7 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 60 REMARK 3 RESIDUE RANGE : A 69 A 101 REMARK 3 RESIDUE RANGE : A 102 A 139 REMARK 3 RESIDUE RANGE : A 140 A 153 REMARK 3 RESIDUE RANGE : A 154 A 261 REMARK 3 RESIDUE RANGE : A 262 A 292 REMARK 3 RESIDUE RANGE : A 293 A 299 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7335 69.3754 5.3981 REMARK 3 T TENSOR REMARK 3 T11: 0.1826 T22: 0.1489 REMARK 3 T33: 0.0488 T12: 0.0062 REMARK 3 T13: -0.0191 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.5329 L22: 0.2966 REMARK 3 L33: 0.0347 L12: 0.1283 REMARK 3 L13: -0.1193 L23: -0.0012 REMARK 3 S TENSOR REMARK 3 S11: 0.0340 S12: -0.1261 S13: -0.1053 REMARK 3 S21: 0.0038 S22: -0.0702 S23: 0.0595 REMARK 3 S31: -0.0342 S32: 0.0337 S33: 0.0363 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : W 1 W 57 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4576 67.4723 2.5803 REMARK 3 T TENSOR REMARK 3 T11: 0.1880 T22: 0.1366 REMARK 3 T33: 0.1192 T12: -0.0549 REMARK 3 T13: -0.0294 T23: 0.0745 REMARK 3 L TENSOR REMARK 3 L11: 0.2287 L22: 0.2236 REMARK 3 L33: 0.1180 L12: 0.1813 REMARK 3 L13: -0.0283 L23: -0.0739 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: -0.1354 S13: -0.1368 REMARK 3 S21: -0.0852 S22: -0.0742 S23: -0.0841 REMARK 3 S31: 0.0498 S32: 0.0242 S33: 0.0385 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6BHF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000230784. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19446 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 45.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 1.51500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5EZ1 REMARK 200 REMARK 200 REMARK: HEXAGONAL RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES (PH 7.0), 30% (V/V) JEFFAMINE ED REMARK 280 -2001, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.69867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.34933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 22.34933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.69867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 157.53175 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 22.34933 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 ASN A 4 REMARK 465 ILE A 5 REMARK 465 LEU A 6 REMARK 465 ASN A 7 REMARK 465 LEU A 8 REMARK 465 ALA A 9 REMARK 465 LEU A 10 REMARK 465 VAL A 11 REMARK 465 GLY A 12 REMARK 465 ALA A 13 REMARK 465 LEU A 14 REMARK 465 SER A 15 REMARK 465 THR A 16 REMARK 465 SER A 17 REMARK 465 PHE A 18 REMARK 465 LEU A 19 REMARK 465 MET A 20 REMARK 465 ALA A 21 REMARK 465 LYS A 22 REMARK 465 PRO A 23 REMARK 465 ALA A 24 REMARK 465 HIS A 25 REMARK 465 ASN A 26 REMARK 465 ALA A 27 REMARK 465 ASN A 28 REMARK 465 ASN A 29 REMARK 465 ALA A 30 REMARK 465 THR A 31 REMARK 465 HIS A 32 REMARK 465 ASN A 33 REMARK 465 THR A 34 REMARK 465 LYS A 35 REMARK 465 LYS A 36 REMARK 465 THR A 37 REMARK 465 THR A 38 REMARK 465 ASP A 39 REMARK 465 SER A 40 REMARK 465 SER A 41 REMARK 465 ALA A 42 REMARK 465 ILE A 61 REMARK 465 LYS A 62 REMARK 465 GLN A 63 REMARK 465 ARG A 64 REMARK 465 ASN A 65 REMARK 465 PRO A 66 REMARK 465 ASN A 67 REMARK 465 PHE A 68 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 MET A 60 CG SD CE REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 LEU A 73 CG CD1 CD2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS A 299 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 51 OD1 ASN A 93 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 357 DISTANCE = 6.24 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE STRUCTURE HAS A THR AT POSITION 80 OF CHAIN A. THIS IS BOTH REMARK 999 CONFIRMED BY THE ELECTRON DENSITY AND SEQUENCING OF THE REMARK 999 CRYSTALLIZED CONSTRUCT DBREF 6BHF A 1 299 UNP P56112 Y175_HELPY 1 299 SEQADV 6BHF THR A 80 UNP P56112 ALA 80 SEE REMARK 999 SEQRES 1 A 299 MET LYS LYS ASN ILE LEU ASN LEU ALA LEU VAL GLY ALA SEQRES 2 A 299 LEU SER THR SER PHE LEU MET ALA LYS PRO ALA HIS ASN SEQRES 3 A 299 ALA ASN ASN ALA THR HIS ASN THR LYS LYS THR THR ASP SEQRES 4 A 299 SER SER ALA GLY VAL LEU ALA THR VAL ASP GLY ARG PRO SEQRES 5 A 299 ILE THR LYS SER ASP PHE ASP MET ILE LYS GLN ARG ASN SEQRES 6 A 299 PRO ASN PHE ASP PHE ASP LYS LEU LYS GLU LYS GLU LYS SEQRES 7 A 299 GLU THR LEU ILE ASP GLN ALA ILE ARG THR ALA LEU VAL SEQRES 8 A 299 GLU ASN GLU ALA LYS THR GLU LYS LEU ASP SER THR PRO SEQRES 9 A 299 GLU PHE LYS ALA MET MET GLU ALA VAL LYS LYS GLN ALA SEQRES 10 A 299 LEU VAL GLU PHE TRP ALA LYS LYS GLN ALA GLU GLU VAL SEQRES 11 A 299 LYS LYS VAL GLN ILE PRO GLU LYS GLU MET GLN ASP PHE SEQRES 12 A 299 TYR ASN ALA ASN LYS ASP GLN LEU PHE VAL LYS GLN GLU SEQRES 13 A 299 ALA HIS ALA ARG HIS ILE LEU VAL LYS THR GLU ASP GLU SEQRES 14 A 299 ALA LYS ARG ILE ILE SER GLU ILE ASP LYS GLN PRO LYS SEQRES 15 A 299 ALA LYS LYS GLU ALA LYS PHE ILE GLU LEU ALA ASN ARG SEQRES 16 A 299 ASP THR ILE ASP PRO ASN SER LYS ASN ALA GLN ASN GLY SEQRES 17 A 299 GLY ASP LEU GLY LYS PHE GLN LYS ASN GLN MET ALA PRO SEQRES 18 A 299 ASP PHE SER LYS ALA ALA PHE ALA LEU THR PRO GLY ASP SEQRES 19 A 299 TYR THR LYS THR PRO VAL LYS THR GLU PHE GLY TYR HIS SEQRES 20 A 299 ILE ILE TYR LEU ILE SER LYS ASP SER PRO VAL THR TYR SEQRES 21 A 299 THR TYR GLU GLN ALA LYS PRO THR ILE LYS GLY MET LEU SEQRES 22 A 299 GLN GLU LYS LEU PHE GLN GLU ARG MET ASN GLN ARG ILE SEQRES 23 A 299 GLU GLU LEU ARG LYS HIS ALA LYS ILE VAL ILE ASN LYS FORMUL 2 HOH *57(H2 O) HELIX 1 AA1 SER A 56 PHE A 58 5 3 HELIX 2 AA2 ASP A 69 LEU A 73 5 5 HELIX 3 AA3 LYS A 74 GLU A 98 1 25 HELIX 4 AA4 THR A 103 LYS A 132 1 30 HELIX 5 AA5 PRO A 136 PHE A 152 1 17 HELIX 6 AA6 THR A 166 LYS A 179 1 14 HELIX 7 AA7 PRO A 181 ALA A 183 5 3 HELIX 8 AA8 LYS A 184 THR A 197 1 14 HELIX 9 AA9 ASP A 199 GLN A 206 1 8 HELIX 10 AB1 ASN A 217 MET A 219 5 3 HELIX 11 AB2 ALA A 220 ALA A 229 1 10 HELIX 12 AB3 THR A 261 LYS A 291 1 31 SHEET 1 AA1 2 VAL A 44 VAL A 48 0 SHEET 2 AA1 2 ARG A 51 THR A 54 -1 O ILE A 53 N ALA A 46 SHEET 1 AA2 2 VAL A 153 LYS A 154 0 SHEET 2 AA2 2 VAL A 258 THR A 259 -1 O VAL A 258 N LYS A 154 SHEET 1 AA3 4 ASP A 210 GLN A 215 0 SHEET 2 AA3 4 GLU A 156 VAL A 164 -1 N ALA A 157 O PHE A 214 SHEET 3 AA3 4 GLY A 245 LYS A 254 -1 O TYR A 250 N ARG A 160 SHEET 4 AA3 4 VAL A 240 THR A 242 -1 N THR A 242 O GLY A 245 CRYST1 90.951 90.951 67.048 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010995 0.006348 0.000000 0.00000 SCALE2 0.000000 0.012696 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014915 0.00000