HEADER RNA BINDING PROTEIN 06-NOV-17 6BJG TITLE CIRV P19 MUTANT T111H IN COMPLEX WITH SIRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA SILENCING SUPPRESSOR P19; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 19 KDA SYMPTOM SEVERITY MODULATOR; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'- COMPND 9 R(P*UP*CP*GP*AP*AP*GP*UP*AP*UP*UP*CP*CP*GP*CP*GP*UP*AP*CP*GP*UP*U)- COMPND 10 3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: RNA (5'- COMPND 15 R(P*CP*GP*UP*AP*CP*GP*CP*GP*GP*AP*AP*UP*AP*CP*UP*UP*CP*GP*AP*UP*U)- COMPND 16 3'); COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARNATION ITALIAN RINGSPOT VIRUS; SOURCE 3 ORGANISM_COMMON: CIRV; SOURCE 4 ORGANISM_TAXID: 39443; SOURCE 5 GENE: ORF4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: LAMPYRIDAE; SOURCE 11 ORGANISM_TAXID: 7049; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: LAMPYRIDAE; SOURCE 15 ORGANISM_TAXID: 7049 KEYWDS VIRAL SUPPRESSOR, RNA SILENCING SIRNA BINDING PROTEIN P19, ALTERED KEYWDS 2 AFFINITY FOR MICRORNA, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.V.FOSS,N.SCHIRLE,J.P.PEZACKI,I.J.MACRAE REVDAT 3 04-OCT-23 6BJG 1 REMARK REVDAT 2 03-JUL-19 6BJG 1 JRNL REVDAT 1 16-JAN-19 6BJG 0 JRNL AUTH D.V.FOSS,N.T.SCHIRLE,I.J.MACRAE,J.P.PEZACKI JRNL TITL STRUCTURAL INSIGHTS INTO INTERACTIONS BETWEEN VIRAL JRNL TITL 2 SUPPRESSOR OF RNA SILENCING PROTEIN P19 MUTANTS AND SMALL JRNL TITL 3 RNAS. JRNL REF FEBS OPEN BIO V. 9 1042 2019 JRNL REFN ESSN 2211-5463 JRNL PMID 31021526 JRNL DOI 10.1002/2211-5463.12644 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.CHENG,D.C.DANIELSON,N.NASHERI,R.SINGARAVELU,J.P.PEZACKI REMARK 1 TITL ENHANCED SPECIFICITY OF THE VIRAL SUPPRESSOR OF RNA REMARK 1 TITL 2 SILENCING PROTEIN P19 TOWARD SEQUESTERING OF HUMAN REMARK 1 TITL 3 MICRORNA-122 REMARK 1 REF BIOCHEMISTRY V. 50 7745 2011 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 21819044 REMARK 1 DOI 10.1021/BI2008273 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 3 NUMBER OF REFLECTIONS : 15444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8260 - 4.1561 0.88 2451 142 0.1860 0.2270 REMARK 3 2 4.1561 - 3.2996 0.92 2549 146 0.1831 0.2146 REMARK 3 3 3.2996 - 2.8827 0.86 2384 136 0.2253 0.3021 REMARK 3 4 2.8827 - 2.6193 0.90 2522 130 0.2620 0.3102 REMARK 3 5 2.6193 - 2.4316 0.85 2421 112 0.2608 0.3173 REMARK 3 6 2.4316 - 2.2900 0.84 2323 128 0.2674 0.3314 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3351 REMARK 3 ANGLE : 0.559 4723 REMARK 3 CHIRALITY : 0.031 532 REMARK 3 PLANARITY : 0.003 459 REMARK 3 DIHEDRAL : 11.299 1360 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2162 44.1304 71.9550 REMARK 3 T TENSOR REMARK 3 T11: 0.3339 T22: 0.2612 REMARK 3 T33: 0.3036 T12: -0.0603 REMARK 3 T13: 0.3211 T23: 0.2186 REMARK 3 L TENSOR REMARK 3 L11: 8.4477 L22: 3.4858 REMARK 3 L33: 5.4886 L12: 1.4966 REMARK 3 L13: 0.5420 L23: -1.3381 REMARK 3 S TENSOR REMARK 3 S11: 1.4549 S12: 0.9561 S13: -1.5031 REMARK 3 S21: -0.1643 S22: -0.5263 S23: 0.3126 REMARK 3 S31: -0.3159 S32: -0.8728 S33: 0.3451 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2075 53.1220 78.6339 REMARK 3 T TENSOR REMARK 3 T11: 0.5477 T22: 0.4776 REMARK 3 T33: 0.2387 T12: -0.0912 REMARK 3 T13: 0.1659 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 3.3067 L22: 5.6783 REMARK 3 L33: 6.6508 L12: -2.8783 REMARK 3 L13: 2.7433 L23: -5.1282 REMARK 3 S TENSOR REMARK 3 S11: -0.3623 S12: -0.9690 S13: -0.2850 REMARK 3 S21: 0.0737 S22: -0.1084 S23: 0.5492 REMARK 3 S31: 0.2621 S32: -1.3333 S33: -0.1144 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2730 54.7332 78.7517 REMARK 3 T TENSOR REMARK 3 T11: 0.5762 T22: 0.3142 REMARK 3 T33: 0.2164 T12: 0.0178 REMARK 3 T13: 0.1287 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 2.4882 L22: 5.3686 REMARK 3 L33: 0.2072 L12: -0.9468 REMARK 3 L13: 0.3998 L23: -0.0712 REMARK 3 S TENSOR REMARK 3 S11: 0.3230 S12: -0.6138 S13: 0.2757 REMARK 3 S21: 1.1815 S22: -0.0655 S23: 0.1779 REMARK 3 S31: -0.0747 S32: -0.2305 S33: -0.2616 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2952 72.8050 72.6715 REMARK 3 T TENSOR REMARK 3 T11: 0.6381 T22: 0.4697 REMARK 3 T33: 0.7998 T12: -0.0940 REMARK 3 T13: 0.1167 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 3.1683 L22: 7.0236 REMARK 3 L33: 3.8523 L12: -3.8220 REMARK 3 L13: -0.3868 L23: 0.9122 REMARK 3 S TENSOR REMARK 3 S11: 0.8858 S12: 0.4811 S13: 2.5256 REMARK 3 S21: 0.2398 S22: -0.0447 S23: -0.6594 REMARK 3 S31: -0.7987 S32: 0.4573 S33: -0.7613 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0020 54.4506 72.8322 REMARK 3 T TENSOR REMARK 3 T11: 0.3066 T22: 0.1559 REMARK 3 T33: 0.0973 T12: -0.0207 REMARK 3 T13: 0.1053 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 3.0041 L22: 5.6644 REMARK 3 L33: 4.9755 L12: 0.2172 REMARK 3 L13: 0.9470 L23: -0.2905 REMARK 3 S TENSOR REMARK 3 S11: -0.1370 S12: -0.0431 S13: 0.1743 REMARK 3 S21: 0.1946 S22: -0.0708 S23: 0.1494 REMARK 3 S31: -0.2017 S32: 0.2756 S33: 0.1841 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8979 55.0450 79.1984 REMARK 3 T TENSOR REMARK 3 T11: 0.4542 T22: 0.2617 REMARK 3 T33: 0.2480 T12: -0.0585 REMARK 3 T13: -0.2663 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 2.0868 L22: 3.4243 REMARK 3 L33: 4.8287 L12: -2.2989 REMARK 3 L13: -2.0683 L23: 0.7606 REMARK 3 S TENSOR REMARK 3 S11: 0.2360 S12: -0.7742 S13: 0.5334 REMARK 3 S21: 0.6772 S22: -0.1171 S23: -0.8421 REMARK 3 S31: -0.6748 S32: 0.3950 S33: 0.0081 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1586 36.6415 72.9667 REMARK 3 T TENSOR REMARK 3 T11: 0.6838 T22: 0.2152 REMARK 3 T33: 0.3911 T12: 0.0268 REMARK 3 T13: 0.0942 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 3.1162 L22: 3.3710 REMARK 3 L33: 1.2823 L12: 2.6724 REMARK 3 L13: -0.3972 L23: 0.8722 REMARK 3 S TENSOR REMARK 3 S11: -0.2013 S12: -0.0713 S13: -0.7978 REMARK 3 S21: 0.2453 S22: 0.0347 S23: -0.4354 REMARK 3 S31: 0.8606 S32: 0.6495 S33: -0.0307 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8357 54.5579 66.0712 REMARK 3 T TENSOR REMARK 3 T11: 0.1670 T22: 0.1505 REMARK 3 T33: 0.1224 T12: 0.0818 REMARK 3 T13: 0.0728 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 4.8084 L22: 3.0322 REMARK 3 L33: 4.9820 L12: 2.2664 REMARK 3 L13: 0.7058 L23: 2.0743 REMARK 3 S TENSOR REMARK 3 S11: -0.0951 S12: 0.1122 S13: 0.6334 REMARK 3 S21: -0.3366 S22: -0.0203 S23: 0.8467 REMARK 3 S31: -0.4125 S32: -0.1152 S33: 0.0535 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1865 48.1265 66.9687 REMARK 3 T TENSOR REMARK 3 T11: 0.2061 T22: 0.3052 REMARK 3 T33: 0.2555 T12: -0.0370 REMARK 3 T13: -0.0378 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 5.2256 L22: 6.5353 REMARK 3 L33: 5.5007 L12: 1.7093 REMARK 3 L13: -0.2807 L23: 0.4830 REMARK 3 S TENSOR REMARK 3 S11: -0.2478 S12: -0.1810 S13: -0.3616 REMARK 3 S21: 0.4798 S22: 0.2051 S23: -1.2605 REMARK 3 S31: 0.3846 S32: 0.6724 S33: 0.0316 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5362 52.4124 36.4334 REMARK 3 T TENSOR REMARK 3 T11: 0.8209 T22: 0.2107 REMARK 3 T33: 0.2212 T12: 0.0199 REMARK 3 T13: 0.1350 T23: 0.0964 REMARK 3 L TENSOR REMARK 3 L11: 2.8151 L22: 4.4003 REMARK 3 L33: 3.4814 L12: 1.5739 REMARK 3 L13: -2.3215 L23: -2.5075 REMARK 3 S TENSOR REMARK 3 S11: 0.5247 S12: 0.8949 S13: 0.4155 REMARK 3 S21: -1.8823 S22: -0.2450 S23: -0.0080 REMARK 3 S31: -0.8530 S32: -0.4416 S33: -0.2243 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0597 38.0598 45.6081 REMARK 3 T TENSOR REMARK 3 T11: 0.3084 T22: 0.2264 REMARK 3 T33: 0.3460 T12: 0.0198 REMARK 3 T13: 0.1463 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 3.6983 L22: 3.8361 REMARK 3 L33: 3.1465 L12: 0.6443 REMARK 3 L13: 0.4298 L23: 0.9615 REMARK 3 S TENSOR REMARK 3 S11: -0.2007 S12: 0.0008 S13: -0.6499 REMARK 3 S21: -0.6165 S22: -0.0502 S23: -1.4013 REMARK 3 S31: 0.6535 S32: 0.2735 S33: 0.1284 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8997 48.4308 49.4512 REMARK 3 T TENSOR REMARK 3 T11: 0.1590 T22: 0.1661 REMARK 3 T33: 0.2563 T12: -0.0473 REMARK 3 T13: 0.0872 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.6578 L22: 4.2823 REMARK 3 L33: 3.1487 L12: -0.2383 REMARK 3 L13: -0.2190 L23: -0.7126 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: 0.0386 S13: -0.1443 REMARK 3 S21: -0.0740 S22: -0.0697 S23: -0.6036 REMARK 3 S31: 0.0179 S32: 0.2394 S33: 0.0589 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7818 56.1045 54.5655 REMARK 3 T TENSOR REMARK 3 T11: 0.2448 T22: 0.1544 REMARK 3 T33: 0.2586 T12: -0.0823 REMARK 3 T13: 0.0564 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 3.0950 L22: 2.4445 REMARK 3 L33: 3.8648 L12: -0.0449 REMARK 3 L13: -0.2579 L23: 0.4704 REMARK 3 S TENSOR REMARK 3 S11: 0.0634 S12: -0.1238 S13: 0.3616 REMARK 3 S21: 0.1313 S22: 0.0322 S23: -0.5816 REMARK 3 S31: -0.8000 S32: 0.1726 S33: -0.0141 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1034 38.5860 42.7834 REMARK 3 T TENSOR REMARK 3 T11: 0.3948 T22: 0.1793 REMARK 3 T33: 0.2524 T12: 0.0147 REMARK 3 T13: -0.0270 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 6.8732 L22: 7.2562 REMARK 3 L33: 8.2977 L12: 2.9695 REMARK 3 L13: -0.4624 L23: -0.2991 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: 0.1880 S13: 0.3948 REMARK 3 S21: 0.0209 S22: -0.3283 S23: 0.3669 REMARK 3 S31: -0.6508 S32: -0.2068 S33: 0.3279 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7519 42.5895 55.8161 REMARK 3 T TENSOR REMARK 3 T11: 0.2062 T22: 0.4302 REMARK 3 T33: 0.5417 T12: -0.0192 REMARK 3 T13: -0.0112 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 3.8186 L22: 5.3388 REMARK 3 L33: 5.8642 L12: 0.8045 REMARK 3 L13: -0.8731 L23: -1.2162 REMARK 3 S TENSOR REMARK 3 S11: 0.0324 S12: 0.4642 S13: -1.0964 REMARK 3 S21: -0.1118 S22: 0.1492 S23: -0.8567 REMARK 3 S31: -0.0362 S32: -1.1372 S33: -0.2048 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3718 63.9422 59.9801 REMARK 3 T TENSOR REMARK 3 T11: 0.5659 T22: 0.4697 REMARK 3 T33: 0.6079 T12: 0.1862 REMARK 3 T13: 0.0257 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 4.4995 L22: 3.9108 REMARK 3 L33: 4.7825 L12: 2.2763 REMARK 3 L13: -1.3151 L23: -0.3911 REMARK 3 S TENSOR REMARK 3 S11: 1.3106 S12: 0.3297 S13: 0.5267 REMARK 3 S21: -0.0944 S22: -0.7725 S23: 1.1697 REMARK 3 S31: -1.2358 S32: -1.1697 S33: -0.3193 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7104 60.4436 66.5224 REMARK 3 T TENSOR REMARK 3 T11: 0.6525 T22: 0.3024 REMARK 3 T33: 0.4045 T12: 0.0517 REMARK 3 T13: 0.1069 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 3.6309 L22: 7.2299 REMARK 3 L33: 5.4603 L12: 4.1314 REMARK 3 L13: 3.4277 L23: 5.4981 REMARK 3 S TENSOR REMARK 3 S11: -0.2669 S12: -0.1752 S13: 0.5129 REMARK 3 S21: -1.2430 S22: -0.2611 S23: 0.9585 REMARK 3 S31: -0.9075 S32: -0.6670 S33: 0.4250 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7068 55.5221 50.6633 REMARK 3 T TENSOR REMARK 3 T11: 0.5064 T22: 0.4271 REMARK 3 T33: 0.6026 T12: -0.0142 REMARK 3 T13: 0.0249 T23: 0.0558 REMARK 3 L TENSOR REMARK 3 L11: 4.0019 L22: 8.2124 REMARK 3 L33: 7.5494 L12: -5.3180 REMARK 3 L13: -0.8180 L23: 3.6027 REMARK 3 S TENSOR REMARK 3 S11: -0.6578 S12: 0.9523 S13: 0.9364 REMARK 3 S21: -0.1433 S22: -0.4035 S23: -0.9683 REMARK 3 S31: 0.3417 S32: -1.6633 S33: 0.8337 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 11 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4968 35.1343 48.7575 REMARK 3 T TENSOR REMARK 3 T11: 0.2664 T22: 0.2573 REMARK 3 T33: 0.4782 T12: 0.0299 REMARK 3 T13: -0.0439 T23: -0.0571 REMARK 3 L TENSOR REMARK 3 L11: 5.2330 L22: 6.3307 REMARK 3 L33: 9.4062 L12: -0.3573 REMARK 3 L13: -0.1375 L23: 0.1780 REMARK 3 S TENSOR REMARK 3 S11: 0.2213 S12: 0.2429 S13: 0.1380 REMARK 3 S21: -0.5170 S22: -0.5955 S23: 0.6694 REMARK 3 S31: 0.8351 S32: -0.4038 S33: 0.3105 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000229658. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 70 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15496 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 34.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.14500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1RPU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3-12% PEG 1500, 100 MM SODIUM ACETATE REMARK 280 PH 4.6, 10-40 MM MGCL2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 50 REMARK 465 SER A 51 REMARK 465 ASN A 52 REMARK 465 GLN A 53 REMARK 465 THR A 148 REMARK 465 PRO A 149 REMARK 465 VAL A 150 REMARK 465 GLU A 151 REMARK 465 VAL A 152 REMARK 465 GLU A 153 REMARK 465 SER A 154 REMARK 465 ASN A 155 REMARK 465 VAL A 156 REMARK 465 SER A 157 REMARK 465 ARG A 158 REMARK 465 GLY A 159 REMARK 465 CYS A 160 REMARK 465 PRO A 161 REMARK 465 GLU A 162 REMARK 465 GLY A 163 REMARK 465 ILE A 164 REMARK 465 GLU A 165 REMARK 465 THR A 166 REMARK 465 PHE A 167 REMARK 465 LYS A 168 REMARK 465 LYS A 169 REMARK 465 GLU A 170 REMARK 465 SER A 171 REMARK 465 GLU A 172 REMARK 465 ASN B 50 REMARK 465 SER B 51 REMARK 465 ASN B 52 REMARK 465 VAL B 150 REMARK 465 GLU B 151 REMARK 465 VAL B 152 REMARK 465 GLU B 153 REMARK 465 SER B 154 REMARK 465 ASN B 155 REMARK 465 VAL B 156 REMARK 465 SER B 157 REMARK 465 ARG B 158 REMARK 465 GLY B 159 REMARK 465 CYS B 160 REMARK 465 PRO B 161 REMARK 465 GLU B 162 REMARK 465 GLY B 163 REMARK 465 ILE B 164 REMARK 465 GLU B 165 REMARK 465 THR B 166 REMARK 465 PHE B 167 REMARK 465 LYS B 168 REMARK 465 LYS B 169 REMARK 465 GLU B 170 REMARK 465 SER B 171 REMARK 465 GLU B 172 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 17 HH22 ARG A 72 1.56 REMARK 500 HH22 ARG B 11 OP1 A D 10 1.59 REMARK 500 O ASP B 47 O HOH B 201 2.06 REMARK 500 O3' U C 21 O HOH C 101 2.08 REMARK 500 O HOH B 224 O HOH B 228 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HO2' C C 2 O4 U C 20 1544 1.46 REMARK 500 O2' C C 2 O4 U C 20 1544 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU B 44 C TYR B 45 N -0.204 REMARK 500 U C 1 P U C 1 OP3 -0.126 REMARK 500 C D 1 P C D 1 OP3 -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR B 45 O - C - N ANGL. DEV. = 11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 78.16 -100.32 REMARK 500 GLN A 6 50.38 -148.19 REMARK 500 GLN A 146 68.65 -111.33 REMARK 500 ARG B 3 46.76 -86.19 REMARK 500 ALA B 105 -122.46 63.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 234 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 235 DISTANCE = 7.96 ANGSTROMS REMARK 525 HOH A 236 DISTANCE = 8.51 ANGSTROMS REMARK 525 HOH B 248 DISTANCE = 6.94 ANGSTROMS DBREF 6BJG A 1 172 UNP Q66104 P19_CIRV 1 172 DBREF 6BJG B 1 172 UNP Q66104 P19_CIRV 1 172 DBREF 6BJG C 1 21 PDB 6BJG 6BJG 1 21 DBREF 6BJG D 1 21 PDB 6BJG 6BJG 1 21 SEQADV 6BJG HIS A 111 UNP Q66104 THR 111 ENGINEERED MUTATION SEQADV 6BJG HIS B 111 UNP Q66104 THR 111 ENGINEERED MUTATION SEQRES 1 A 172 MET GLU ARG ALA ILE GLN GLY ASN ASP THR ARG GLU GLN SEQRES 2 A 172 ALA ASN GLY GLU ARG TRP ASP GLY GLY SER GLY GLY ILE SEQRES 3 A 172 THR SER PRO PHE LYS LEU PRO ASP GLU SER PRO SER TRP SEQRES 4 A 172 THR GLU TRP ARG LEU TYR ASN ASP GLU THR ASN SER ASN SEQRES 5 A 172 GLN ASP ASN PRO LEU GLY PHE LYS GLU SER TRP GLY PHE SEQRES 6 A 172 GLY LYS VAL VAL PHE LYS ARG TYR LEU ARG TYR ASP ARG SEQRES 7 A 172 THR GLU ALA SER LEU HIS ARG VAL LEU GLY SER TRP THR SEQRES 8 A 172 GLY ASP SER VAL ASN TYR ALA ALA SER ARG PHE LEU GLY SEQRES 9 A 172 ALA ASN GLN VAL GLY CYS HIS TYR SER ILE ARG PHE ARG SEQRES 10 A 172 GLY VAL SER VAL THR ILE SER GLY GLY SER ARG THR LEU SEQRES 11 A 172 GLN HIS LEU CYS GLU MET ALA ILE ARG SER LYS GLN GLU SEQRES 12 A 172 LEU LEU GLN LEU THR PRO VAL GLU VAL GLU SER ASN VAL SEQRES 13 A 172 SER ARG GLY CYS PRO GLU GLY ILE GLU THR PHE LYS LYS SEQRES 14 A 172 GLU SER GLU SEQRES 1 B 172 MET GLU ARG ALA ILE GLN GLY ASN ASP THR ARG GLU GLN SEQRES 2 B 172 ALA ASN GLY GLU ARG TRP ASP GLY GLY SER GLY GLY ILE SEQRES 3 B 172 THR SER PRO PHE LYS LEU PRO ASP GLU SER PRO SER TRP SEQRES 4 B 172 THR GLU TRP ARG LEU TYR ASN ASP GLU THR ASN SER ASN SEQRES 5 B 172 GLN ASP ASN PRO LEU GLY PHE LYS GLU SER TRP GLY PHE SEQRES 6 B 172 GLY LYS VAL VAL PHE LYS ARG TYR LEU ARG TYR ASP ARG SEQRES 7 B 172 THR GLU ALA SER LEU HIS ARG VAL LEU GLY SER TRP THR SEQRES 8 B 172 GLY ASP SER VAL ASN TYR ALA ALA SER ARG PHE LEU GLY SEQRES 9 B 172 ALA ASN GLN VAL GLY CYS HIS TYR SER ILE ARG PHE ARG SEQRES 10 B 172 GLY VAL SER VAL THR ILE SER GLY GLY SER ARG THR LEU SEQRES 11 B 172 GLN HIS LEU CYS GLU MET ALA ILE ARG SER LYS GLN GLU SEQRES 12 B 172 LEU LEU GLN LEU THR PRO VAL GLU VAL GLU SER ASN VAL SEQRES 13 B 172 SER ARG GLY CYS PRO GLU GLY ILE GLU THR PHE LYS LYS SEQRES 14 B 172 GLU SER GLU SEQRES 1 C 21 U C G A A G U A U U C C G SEQRES 2 C 21 C G U A C G U U SEQRES 1 D 21 C G U A C G C G G A A U A SEQRES 2 D 21 C U U C G A U U FORMUL 5 HOH *121(H2 O) HELIX 1 AA1 GLY A 7 GLY A 21 1 15 HELIX 2 AA2 SER A 38 ASP A 47 1 10 HELIX 3 AA3 THR A 79 GLY A 88 1 10 HELIX 4 AA4 THR A 91 LEU A 103 1 13 HELIX 5 AA5 THR A 129 GLN A 146 1 18 HELIX 6 AA6 GLY B 7 ARG B 18 1 12 HELIX 7 AA7 SER B 38 ASN B 46 1 9 HELIX 8 AA8 THR B 79 GLY B 88 1 10 HELIX 9 AA9 THR B 91 SER B 100 1 10 HELIX 10 AB1 THR B 129 GLN B 146 1 18 SHEET 1 AA1 8 VAL A 68 ARG A 75 0 SHEET 2 AA1 8 GLY A 58 PHE A 65 -1 N TRP A 63 O PHE A 70 SHEET 3 AA1 8 GLY A 109 PHE A 116 -1 O HIS A 111 N GLY A 64 SHEET 4 AA1 8 VAL A 119 GLY A 126 -1 O ILE A 123 N TYR A 112 SHEET 5 AA1 8 VAL B 119 GLY B 126 -1 O SER B 120 N SER A 124 SHEET 6 AA1 8 GLY B 109 PHE B 116 -1 N CYS B 110 O GLY B 125 SHEET 7 AA1 8 GLY B 58 PHE B 65 -1 N GLY B 64 O HIS B 111 SHEET 8 AA1 8 VAL B 68 ARG B 75 -1 O PHE B 70 N TRP B 63 CISPEP 1 MET A 1 GLU A 2 0 -10.55 CISPEP 2 ASP A 20 GLY A 21 0 -8.21 CISPEP 3 GLU B 48 THR B 49 0 0.51 CRYST1 46.386 46.934 54.623 109.33 111.12 96.61 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021558 0.002499 0.010194 0.00000 SCALE2 0.000000 0.021449 0.009418 0.00000 SCALE3 0.000000 0.000000 0.021435 0.00000