HEADER HYDROLASE 06-NOV-17 6BJR TITLE CRYSTAL STRUCTURE OF PROTHROMBIN MUTANT S101C/A470C COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTHROMBIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: COAGULATION FACTOR II; COMPND 5 EC: 3.4.21.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F2; SOURCE 6 EXPRESSION_SYSTEM: MESOCRICETUS AURATUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10036; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: BABY HAMSTER KIDNEY (BHK) KEYWDS FULL-LENGTH PROTHROMBIN, KRINGLE, CLOSED CONFORMATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.CHINNARAJ,Z.CHEN,L.PELC,Z.GRESE,D.BYSTRANOWSKA,E.DI CERA,N.POZZI REVDAT 6 15-NOV-23 6BJR 1 REMARK REVDAT 5 04-OCT-23 6BJR 1 HETSYN REVDAT 4 29-JUL-20 6BJR 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 04-DEC-19 6BJR 1 REMARK REVDAT 2 20-FEB-19 6BJR 1 REMARK REVDAT 1 27-JUN-18 6BJR 0 JRNL AUTH M.CHINNARAJ,Z.CHEN,L.A.PELC,Z.GRESE,D.BYSTRANOWSKA, JRNL AUTH 2 E.DI CERA,N.POZZI JRNL TITL STRUCTURE OF PROTHROMBIN IN THE CLOSED FORM REVEALS NEW JRNL TITL 2 DETAILS ON THE MECHANISM OF ACTIVATION. JRNL REF SCI REP V. 8 2945 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29440720 JRNL DOI 10.1038/S41598-018-21304-1 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.POZZI,Z.CHEN,E.DI CERA REMARK 1 TITL HOW THE LINKER CONNECTING THE TWO KRINGLES INFLUENCES REMARK 1 TITL 2 ACTIVATION AND CONFORMATIONAL PLASTICITY OF PROTHROMBIN. REMARK 1 REF J. BIOL. CHEM. V. 291 6071 2016 REMARK 1 REFN ESSN 1083-351X REMARK 1 PMID 26763231 REMARK 1 DOI 10.1074/JBC.M115.700401 REMARK 2 REMARK 2 RESOLUTION. 6.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 6.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : -1.500 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.4 REMARK 3 NUMBER OF REFLECTIONS : 2488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 137 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 6.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 6.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 41 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 20.80 REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : 6 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4594 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -16.35000 REMARK 3 B22 (A**2) : -20.10000 REMARK 3 B33 (A**2) : 36.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4771 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4193 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6485 ; 1.450 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9768 ; 0.998 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 572 ; 8.987 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 224 ;35.926 ;23.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 762 ;18.639 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;12.855 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 688 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5329 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 994 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2297 ; 4.439 ;23.189 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2296 ; 4.440 ;23.189 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2866 ; 7.745 ;34.770 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2867 ; 7.743 ;34.770 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2474 ; 2.779 ;23.258 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2474 ; 2.776 ;23.258 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3620 ; 5.304 ;34.834 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5466 ;12.631 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5465 ;12.632 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6BJR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1000230965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2633 REMARK 200 RESOLUTION RANGE HIGH (A) : 6.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 6.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 6.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5EDM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BICINE, PH 8.5 AND 16% PEG3350, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.54650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.54650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.06300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.08750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.06300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.08750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.54650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.06300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.08750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.54650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.06300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.08750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 259 REMARK 465 LEU A 260 REMARK 465 ASP A 261 REMARK 465 GLU A 262 REMARK 465 ASP A 263 REMARK 465 SER A 264 REMARK 465 ASP A 265 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 237 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 2 -2.13 71.66 REMARK 500 THR A 3 -153.53 -154.80 REMARK 500 PHE A 4 -66.62 -96.57 REMARK 500 VAL A 8 -57.16 -29.18 REMARK 500 ASN A 12 -46.79 -25.13 REMARK 500 CGU A 16 -76.30 -53.16 REMARK 500 CGU A 29 -58.18 -162.95 REMARK 500 THR A 37 -38.80 -25.93 REMARK 500 THR A 49 46.74 -86.15 REMARK 500 ALA A 50 99.80 174.27 REMARK 500 ALA A 58 -63.81 -19.14 REMARK 500 SER A 82 -71.13 -79.72 REMARK 500 TRP A 89 48.48 -104.23 REMARK 500 ARG A 90 -43.23 -169.94 REMARK 500 ASP A 108 65.67 67.70 REMARK 500 GLU A 111 -158.94 73.66 REMARK 500 PHE A 113 -155.00 -88.64 REMARK 500 ASN A 116 63.36 -161.47 REMARK 500 SER A 119 81.55 68.04 REMARK 500 MET A 122 -65.13 -135.38 REMARK 500 PRO A 124 122.55 -38.78 REMARK 500 GLN A 147 112.87 -169.82 REMARK 500 ARG A 155 136.19 68.03 REMARK 500 SER A 159 -105.74 -153.64 REMARK 500 SER A 164 -50.03 -168.28 REMARK 500 LEU A 167 103.84 -165.75 REMARK 500 GLN A 169 133.72 89.28 REMARK 500 ALA A 183 48.03 -151.44 REMARK 500 THR A 185 -162.10 -122.08 REMARK 500 SER A 196 -85.74 -126.26 REMARK 500 GLN A 198 50.69 -144.85 REMARK 500 ALA A 199 38.63 -151.46 REMARK 500 LYS A 200 -47.80 -157.97 REMARK 500 GLU A 216 -101.70 64.22 REMARK 500 ASN A 217 47.38 -164.41 REMARK 500 ASN A 221 65.26 -154.35 REMARK 500 GLU A 227 -61.89 -97.04 REMARK 500 PRO A 237 99.93 -0.96 REMARK 500 GLU A 249 57.00 -100.04 REMARK 500 GLU A 253 -71.52 -61.17 REMARK 500 ALA A 267 178.72 74.31 REMARK 500 ARG A 271 -59.86 -149.62 REMARK 500 THR A 272 80.34 -29.25 REMARK 500 ALA A 273 144.26 -175.47 REMARK 500 SER A 275 122.67 77.31 REMARK 500 THR A 279 93.60 -69.47 REMARK 500 ARG A 284 -55.91 -148.91 REMARK 500 PHE A 299 -68.78 -138.85 REMARK 500 ASP A 318 38.39 32.61 REMARK 500 LYS A 341 -81.07 -67.82 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 606 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU A 14 OE11 REMARK 620 2 CGU A 14 OE21 79.9 REMARK 620 3 CGU A 19 OE11 71.9 123.6 REMARK 620 4 CGU A 19 OE22 84.1 156.0 66.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 605 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU A 16 OE11 REMARK 620 2 CGU A 16 OE12 53.3 REMARK 620 3 CGU A 16 OE21 100.3 107.4 REMARK 620 4 CGU A 16 OE22 103.9 69.7 52.1 REMARK 620 5 CGU A 20 OE22 127.1 125.5 27.4 57.3 REMARK 620 6 CGU A 26 OE11 89.7 75.6 169.4 122.2 143.1 REMARK 620 7 CGU A 26 OE21 95.9 148.7 68.6 119.6 65.2 114.2 REMARK 620 8 CGU A 26 OE22 141.6 160.2 84.6 108.7 60.8 89.8 50.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU A 20 OE21 REMARK 620 2 CGU A 26 OE11 39.9 REMARK 620 3 CGU A 29 OE21 47.8 8.4 REMARK 620 4 CGU A 29 OE22 46.1 10.8 7.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU A 25 OE12 REMARK 620 2 CGU A 25 OE22 93.5 REMARK 620 3 CGU A 29 OE11 69.5 123.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU A 25 O REMARK 620 2 CGU A 29 OE11 70.4 REMARK 620 3 CGU A 29 OE21 110.4 76.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 30 O REMARK 620 2 CGU A 32 OE11 138.6 REMARK 620 3 CGU A 32 OE21 75.8 87.8 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5EDM RELATED DB: PDB DBREF 6BJR A 1 579 UNP P00734 THRB_HUMAN 44 622 SEQADV 6BJR CYS A 101 UNP P00734 SER 144 ENGINEERED MUTATION SEQADV 6BJR MET A 122 UNP P00734 THR 165 CONFLICT SEQADV 6BJR CYS A 470 UNP P00734 ALA 513 ENGINEERED MUTATION SEQADV 6BJR TYR A 580 UNP P00734 EXPRESSION TAG SEQADV 6BJR LEU A 581 UNP P00734 EXPRESSION TAG SEQADV 6BJR GLU A 582 UNP P00734 EXPRESSION TAG SEQRES 1 A 582 ALA ASN THR PHE LEU CGU CGU VAL ARG LYS GLY ASN LEU SEQRES 2 A 582 CGU ARG CGU CYS VAL CGU CGU THR CYS SER TYR CGU CGU SEQRES 3 A 582 ALA PHE CGU ALA LEU CGU SER SER THR ALA THR ASP VAL SEQRES 4 A 582 PHE TRP ALA LYS TYR THR ALA CYS GLU THR ALA ARG THR SEQRES 5 A 582 PRO ARG ASP LYS LEU ALA ALA CYS LEU GLU GLY ASN CYS SEQRES 6 A 582 ALA GLU GLY LEU GLY THR ASN TYR ARG GLY HIS VAL ASN SEQRES 7 A 582 ILE THR ARG SER GLY ILE GLU CYS GLN LEU TRP ARG SER SEQRES 8 A 582 ARG TYR PRO HIS LYS PRO GLU ILE ASN CYS THR THR HIS SEQRES 9 A 582 PRO GLY ALA ASP LEU GLN GLU ASN PHE CYS ARG ASN PRO SEQRES 10 A 582 ASP SER SER THR MET GLY PRO TRP CYS TYR THR THR ASP SEQRES 11 A 582 PRO THR VAL ARG ARG GLN GLU CYS SER ILE PRO VAL CYS SEQRES 12 A 582 GLY GLN ASP GLN VAL THR VAL ALA MET THR PRO ARG SER SEQRES 13 A 582 GLU GLY SER SER VAL ASN LEU SER PRO PRO LEU GLU GLN SEQRES 14 A 582 CYS VAL PRO ASP ARG GLY GLN GLN TYR GLN GLY ARG LEU SEQRES 15 A 582 ALA VAL THR THR HIS GLY LEU PRO CYS LEU ALA TRP ALA SEQRES 16 A 582 SER ALA GLN ALA LYS ALA LEU SER LYS HIS GLN ASP PHE SEQRES 17 A 582 ASN SER ALA VAL GLN LEU VAL GLU ASN PHE CYS ARG ASN SEQRES 18 A 582 PRO ASP GLY ASP GLU GLU GLY VAL TRP CYS TYR VAL ALA SEQRES 19 A 582 GLY LYS PRO GLY ASP PHE GLY TYR CYS ASP LEU ASN TYR SEQRES 20 A 582 CYS GLU GLU ALA VAL GLU GLU GLU THR GLY ASP GLY LEU SEQRES 21 A 582 ASP GLU ASP SER ASP ARG ALA ILE GLU GLY ARG THR ALA SEQRES 22 A 582 THR SER GLU TYR GLN THR PHE PHE ASN PRO ARG THR PHE SEQRES 23 A 582 GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO LEU PHE SEQRES 24 A 582 GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG GLU LEU SEQRES 25 A 582 LEU GLU SER TYR ILE ASP GLY ARG ILE VAL GLU GLY SER SEQRES 26 A 582 ASP ALA GLU ILE GLY MET SER PRO TRP GLN VAL MET LEU SEQRES 27 A 582 PHE ARG LYS SER PRO GLN GLU LEU LEU CYS GLY ALA SER SEQRES 28 A 582 LEU ILE SER ASP ARG TRP VAL LEU THR ALA ALA HIS CYS SEQRES 29 A 582 LEU LEU TYR PRO PRO TRP ASP LYS ASN PHE THR GLU ASN SEQRES 30 A 582 ASP LEU LEU VAL ARG ILE GLY LYS HIS SER ARG THR ARG SEQRES 31 A 582 TYR GLU ARG ASN ILE GLU LYS ILE SER MET LEU GLU LYS SEQRES 32 A 582 ILE TYR ILE HIS PRO ARG TYR ASN TRP ARG GLU ASN LEU SEQRES 33 A 582 ASP ARG ASP ILE ALA LEU MET LYS LEU LYS LYS PRO VAL SEQRES 34 A 582 ALA PHE SER ASP TYR ILE HIS PRO VAL CYS LEU PRO ASP SEQRES 35 A 582 ARG GLU THR ALA ALA SER LEU LEU GLN ALA GLY TYR LYS SEQRES 36 A 582 GLY ARG VAL THR GLY TRP GLY ASN LEU LYS GLU THR TRP SEQRES 37 A 582 THR CYS ASN VAL GLY LYS GLY GLN PRO SER VAL LEU GLN SEQRES 38 A 582 VAL VAL ASN LEU PRO ILE VAL GLU ARG PRO VAL CYS LYS SEQRES 39 A 582 ASP SER THR ARG ILE ARG ILE THR ASP ASN MET PHE CYS SEQRES 40 A 582 ALA GLY TYR LYS PRO ASP GLU GLY LYS ARG GLY ASP ALA SEQRES 41 A 582 CYS GLU GLY ASP SER GLY GLY PRO PHE VAL MET LYS SER SEQRES 42 A 582 PRO PHE ASN ASN ARG TRP TYR GLN MET GLY ILE VAL SER SEQRES 43 A 582 TRP GLY GLU GLY CYS ASP ARG ASP GLY LYS TYR GLY PHE SEQRES 44 A 582 TYR THR HIS VAL PHE ARG LEU LYS LYS TRP ILE GLN LYS SEQRES 45 A 582 VAL ILE ASP GLN PHE GLY GLU TYR LEU GLU MODRES 6BJR CGU A 6 GLU MODIFIED RESIDUE MODRES 6BJR CGU A 7 GLU MODIFIED RESIDUE MODRES 6BJR CGU A 14 GLU MODIFIED RESIDUE MODRES 6BJR CGU A 16 GLU MODIFIED RESIDUE MODRES 6BJR CGU A 19 GLU MODIFIED RESIDUE MODRES 6BJR CGU A 20 GLU MODIFIED RESIDUE MODRES 6BJR CGU A 25 GLU MODIFIED RESIDUE MODRES 6BJR CGU A 26 GLU MODIFIED RESIDUE MODRES 6BJR CGU A 29 GLU MODIFIED RESIDUE MODRES 6BJR CGU A 32 GLU MODIFIED RESIDUE HET CGU A 6 12 HET CGU A 7 12 HET CGU A 14 12 HET CGU A 16 12 HET CGU A 19 12 HET CGU A 20 12 HET CGU A 25 12 HET CGU A 26 12 HET CGU A 29 12 HET CGU A 32 12 HET NAG B 1 14 HET BMA B 2 11 HET MG A 601 1 HET MG A 602 1 HET MG A 603 1 HET MG A 604 1 HET MG A 605 1 HET MG A 606 1 HET NAG A 609 14 HETNAM CGU GAMMA-CARBOXY-GLUTAMIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MG MAGNESIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 1 CGU 10(C6 H9 N O6) FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 3 MG 6(MG 2+) HELIX 1 AA1 PHE A 4 ARG A 9 1 6 HELIX 2 AA2 ARG A 9 CGU A 16 1 8 HELIX 3 AA3 SER A 23 LEU A 31 1 9 HELIX 4 AA4 ALA A 36 CYS A 47 1 12 HELIX 5 AA5 PRO A 53 GLY A 63 1 11 HELIX 6 AA6 VAL A 171 GLN A 176 5 6 HELIX 7 AA7 SER A 315 GLY A 319 5 5 HELIX 8 AA8 ALA A 361 LEU A 365 5 5 HELIX 9 AA9 TYR A 367 ASP A 371 5 5 HELIX 10 AB1 THR A 375 ASN A 377 5 3 HELIX 11 AB2 ASP A 442 GLN A 451 1 10 HELIX 12 AB3 GLY A 462 TRP A 468 1 7 HELIX 13 AB4 GLU A 489 LYS A 494 1 6 HELIX 14 AB5 ASP A 495 THR A 497 5 3 HELIX 15 AB6 GLY A 548 ARG A 553 1 6 HELIX 16 AB7 LYS A 568 GLY A 578 1 11 HELIX 17 AB8 GLU A 579 LEU A 581 5 3 SHEET 1 AA1 2 TRP A 125 TYR A 127 0 SHEET 2 AA1 2 ARG A 135 GLU A 137 -1 O GLN A 136 N CYS A 126 SHEET 1 AA2 2 TRP A 230 TYR A 232 0 SHEET 2 AA2 2 PHE A 240 TYR A 242 -1 O GLY A 241 N CYS A 231 SHEET 1 AA3 5 SER A 325 ASP A 326 0 SHEET 2 AA3 5 GLN A 481 LEU A 485 -1 O VAL A 482 N SER A 325 SHEET 3 AA3 5 GLY A 456 GLY A 460 -1 N GLY A 460 O GLN A 481 SHEET 4 AA3 5 GLY A 527 VAL A 530 -1 O VAL A 530 N ARG A 457 SHEET 5 AA3 5 GLY A 543 VAL A 545 -1 O VAL A 545 N GLY A 527 SHEET 1 AA4 2 PHE A 339 ARG A 340 0 SHEET 2 AA4 2 LEU A 379 LEU A 380 -1 O LEU A 380 N PHE A 339 SHEET 1 AA5 4 SER A 351 LEU A 352 0 SHEET 2 AA5 4 TRP A 357 LEU A 359 -1 O LEU A 359 N SER A 351 SHEET 3 AA5 4 ALA A 421 LYS A 424 -1 O MET A 423 N VAL A 358 SHEET 4 AA5 4 TYR A 405 ILE A 406 -1 N TYR A 405 O LEU A 422 SHEET 1 AA6 2 MET A 505 CYS A 507 0 SHEET 2 AA6 2 PHE A 559 THR A 561 -1 O TYR A 560 N PHE A 506 SSBOND 1 CYS A 17 CYS A 22 1555 1555 2.03 SSBOND 2 CYS A 47 CYS A 60 1555 1555 2.03 SSBOND 3 CYS A 65 CYS A 143 1555 1555 2.03 SSBOND 4 CYS A 86 CYS A 126 1555 1555 2.08 SSBOND 5 CYS A 101 CYS A 470 1555 1555 2.04 SSBOND 6 CYS A 114 CYS A 138 1555 1555 2.02 SSBOND 7 CYS A 170 CYS A 248 1555 1555 2.02 SSBOND 8 CYS A 191 CYS A 231 1555 1555 2.03 SSBOND 9 CYS A 219 CYS A 243 1555 1555 2.04 SSBOND 10 CYS A 293 CYS A 439 1555 1555 2.03 SSBOND 11 CYS A 348 CYS A 364 1555 1555 2.04 SSBOND 12 CYS A 493 CYS A 507 1555 1555 2.04 SSBOND 13 CYS A 521 CYS A 551 1555 1555 2.03 LINK C LEU A 5 N CGU A 6 1555 1555 1.34 LINK C CGU A 6 N CGU A 7 1555 1555 1.34 LINK C CGU A 7 N VAL A 8 1555 1555 1.33 LINK C LEU A 13 N CGU A 14 1555 1555 1.37 LINK C CGU A 14 N ARG A 15 1555 1555 1.31 LINK C ARG A 15 N CGU A 16 1555 1555 1.35 LINK C CGU A 16 N CYS A 17 1555 1555 1.35 LINK C VAL A 18 N CGU A 19 1555 1555 1.32 LINK C CGU A 19 N CGU A 20 1555 1555 1.33 LINK C CGU A 20 N THR A 21 1555 1555 1.33 LINK C TYR A 24 N CGU A 25 1555 1555 1.33 LINK C CGU A 25 N CGU A 26 1555 1555 1.33 LINK C CGU A 26 N ALA A 27 1555 1555 1.33 LINK C PHE A 28 N CGU A 29 1555 1555 1.33 LINK C CGU A 29 N ALA A 30 1555 1555 1.33 LINK C LEU A 31 N CGU A 32 1555 1555 1.33 LINK C CGU A 32 N SER A 33 1555 1555 1.34 LINK ND2 ASN A 78 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 373 C1 NAG A 609 1555 1555 1.46 LINK O4 NAG B 1 C1 BMA B 2 1555 1555 1.45 LINK OE11 CGU A 14 MG MG A 606 1555 1555 2.45 LINK OE21 CGU A 14 MG MG A 606 1555 1555 2.65 LINK OE11 CGU A 16 MG MG A 605 1555 1555 2.58 LINK OE12 CGU A 16 MG MG A 605 1555 1555 2.24 LINK OE21 CGU A 16 MG MG A 605 1555 1555 2.44 LINK OE22 CGU A 16 MG MG A 605 1555 1555 2.53 LINK OE11 CGU A 19 MG MG A 606 1555 1555 2.07 LINK OE22 CGU A 19 MG MG A 606 1555 1555 2.85 LINK OE21 CGU A 20 MG MG A 604 1555 4555 2.90 LINK OE22 CGU A 20 MG MG A 605 1555 4555 2.62 LINK OE12 CGU A 25 MG MG A 602 1555 1555 2.42 LINK OE22 CGU A 25 MG MG A 602 1555 1555 2.53 LINK O CGU A 25 MG MG A 603 1555 1555 2.89 LINK OE11 CGU A 26 MG MG A 604 1555 1555 2.21 LINK OE11 CGU A 26 MG MG A 605 1555 1555 2.68 LINK OE21 CGU A 26 MG MG A 605 1555 1555 2.58 LINK OE22 CGU A 26 MG MG A 605 1555 1555 2.58 LINK OE11 CGU A 29 MG MG A 602 1555 1555 2.60 LINK OE11 CGU A 29 MG MG A 603 1555 1555 2.39 LINK OE21 CGU A 29 MG MG A 603 1555 1555 2.19 LINK OE21 CGU A 29 MG MG A 604 1555 1555 2.34 LINK OE22 CGU A 29 MG MG A 604 1555 1555 2.24 LINK O ALA A 30 MG MG A 601 1555 1555 2.18 LINK OE11 CGU A 32 MG MG A 601 1555 1555 2.29 LINK OE21 CGU A 32 MG MG A 601 1555 1555 2.72 CISPEP 1 THR A 52 PRO A 53 0 5.93 CISPEP 2 TYR A 93 PRO A 94 0 4.40 CISPEP 3 SER A 164 PRO A 165 0 -1.25 CISPEP 4 SER A 342 PRO A 343 0 3.07 CRYST1 114.126 124.175 157.093 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008762 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006366 0.00000